Wall clock time and date at job start Wed Apr 1 2020 02:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 110.38657 * 2 1 4 4 C 1.54385 * 110.34350 * 237.76495 * 2 1 3 5 5 N 1.48146 * 104.61886 * 217.26383 * 4 2 1 6 6 C 1.34772 * 127.83908 * 219.59013 * 5 4 2 7 7 O 1.21287 * 120.00187 * 354.84980 * 6 5 4 8 8 C 1.50699 * 120.00255 * 174.85192 * 6 5 4 9 9 C 1.50704 * 112.84685 * 293.72307 * 8 6 5 10 10 C 1.38236 * 119.99526 * 116.85122 * 9 8 6 11 11 C 1.38238 * 119.99574 * 179.80791 * 10 9 8 12 12 C 1.38240 * 120.00116 * 0.42184 * 11 10 9 13 13 C 1.38236 * 119.99706 * 359.81375 * 12 11 10 14 14 C 1.38229 * 120.00055 * 359.97438 * 13 12 11 15 15 C 1.53782 * 113.61554 * 162.52990 * 8 6 5 16 16 C 1.54051 * 86.98094 * 270.83771 * 15 8 6 17 17 C 1.53780 * 113.61520 * 64.91712 * 8 6 5 18 18 C 1.48143 * 104.32208 * 39.58558 * 5 4 2 19 19 C 1.54291 * 110.33895 * 122.23033 * 2 1 3 20 20 H 1.09002 * 110.33981 * 237.74246 * 19 2 1 21 21 N 1.46498 * 110.34474 * 359.89543 * 19 2 1 22 22 C 1.36935 * 120.00214 * 204.99947 * 21 19 2 23 23 H 1.07998 * 119.99615 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00121 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00032 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00111 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47500 * 89.99540 * 26 24 22 28 28 H 1.48499 * 109.47383 * 209.99833 * 26 24 22 29 29 H 1.48500 * 109.47133 * 329.99667 * 26 24 22 30 30 H 1.09003 * 109.47539 * 297.77145 * 1 2 3 31 31 H 1.09003 * 109.47186 * 57.76867 * 1 2 3 32 32 H 1.08997 * 109.47246 * 177.76863 * 1 2 3 33 33 H 1.09003 * 109.47048 * 182.22596 * 3 2 1 34 34 H 1.08998 * 109.47695 * 302.23027 * 3 2 1 35 35 H 1.09008 * 109.47461 * 62.23085 * 3 2 1 36 36 H 1.09000 * 110.40941 * 336.05011 * 4 2 1 37 37 H 1.09006 * 110.40531 * 98.47764 * 4 2 1 38 38 H 1.07995 * 120.00604 * 359.97438 * 10 9 8 39 39 H 1.08000 * 119.99865 * 180.20565 * 11 10 9 40 40 H 1.08001 * 119.99784 * 179.78701 * 12 11 10 41 41 H 1.08001 * 119.99741 * 179.97438 * 13 12 11 42 42 H 1.08004 * 120.00120 * 179.97438 * 14 13 12 43 43 H 1.08991 * 113.61486 * 25.42854 * 15 8 6 44 44 H 1.09001 * 113.61436 * 156.33477 * 15 8 6 45 45 H 1.09008 * 113.61538 * 220.02185 * 16 15 8 46 46 H 1.08994 * 113.69239 * 89.12799 * 16 15 8 47 47 H 1.08994 * 113.61483 * 203.66598 * 17 8 6 48 48 H 1.08998 * 113.61485 * 334.49079 * 17 8 6 49 49 H 1.09000 * 110.40594 * 201.62811 * 18 5 4 50 50 H 1.08998 * 110.40821 * 79.20181 * 18 5 4 51 51 H 0.97005 * 120.00051 * 25.00128 * 21 19 2 52 52 H 0.96994 * 120.00195 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4341 0.0000 4 6 2.0667 -0.7721 -1.2244 5 7 3.2664 -1.4817 -0.7225 6 6 4.4424 -1.6664 -1.3544 7 8 4.5756 -1.3070 -2.5051 8 6 5.5919 -2.3196 -0.6312 9 6 6.1163 -1.4848 0.5087 10 6 6.0369 -1.9577 1.8052 11 6 6.5215 -1.1936 2.8504 12 6 7.0774 0.0470 2.6000 13 6 7.1522 0.5219 1.3039 14 6 6.6717 -0.2439 0.2584 15 6 6.6928 -2.8421 -1.5692 16 6 5.9054 -4.1651 -1.6232 17 6 5.3267 -3.7856 -0.2499 18 6 2.8801 -1.9422 0.6315 19 6 2.0663 -0.7716 1.2238 20 1 2.7094 -0.1288 1.8249 21 7 0.9553 -1.2788 2.0330 22 6 1.1376 -1.5270 3.3672 23 1 2.1002 -1.3484 3.8231 24 6 0.0848 -2.0071 4.1341 25 7 0.2601 -2.2461 5.4165 26 14 -1.5804 -2.3152 3.3457 27 1 -1.6384 -3.7105 2.8405 28 1 -2.6511 -2.1089 4.3537 29 1 -1.7755 -1.3713 2.2161 30 1 -0.3634 0.4788 0.9093 31 1 -0.3634 0.5481 -0.8693 32 1 -0.3633 -1.0268 -0.0400 33 1 3.1521 1.4170 -0.0399 34 1 1.6758 1.9657 -0.8693 35 1 1.7407 1.9416 0.9094 36 1 1.3235 -1.4861 -1.5793 37 1 2.3400 -0.0795 -2.0206 38 1 5.5989 -2.9251 2.0014 39 1 6.4626 -1.5645 3.8631 40 1 7.4528 0.6454 3.4170 41 1 7.5862 1.4914 1.1083 42 1 6.7298 0.1273 -0.7542 43 1 6.7368 -2.3193 -2.5245 44 1 7.6676 -2.9334 -1.0902 45 1 6.5392 -5.0517 -1.6000 46 1 5.1595 -4.1988 -2.4172 47 1 5.9287 -4.1343 0.5891 48 1 4.2688 -4.0235 -0.1396 49 1 3.7672 -2.1325 1.2357 50 1 2.2639 -2.8389 0.5666 51 1 0.0906 -1.4388 1.6236 52 1 -0.4754 -2.5819 5.9522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996014202.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:45 Heat of formation + Delta-G solvation = 37.256256 kcal Electronic energy + Delta-G solvation = -32192.559204 eV Core-core repulsion = 28351.209939 eV Total energy + Delta-G solvation = -3841.349265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.14722 -39.28103 -38.31100 -36.86531 -34.26405 -33.21766 -31.24498 -31.13560 -30.87480 -28.06203 -27.24770 -27.00139 -25.97381 -25.07169 -23.73982 -22.38898 -21.83046 -21.57232 -20.61398 -18.89834 -18.13072 -17.65951 -17.36286 -16.34981 -15.78916 -15.67864 -15.27657 -14.79132 -14.63953 -14.43926 -14.28295 -14.07572 -13.75945 -13.45814 -13.32810 -13.14402 -12.88622 -12.76565 -12.59815 -12.46615 -12.00726 -11.95078 -11.93554 -11.71014 -11.57222 -11.41502 -11.16775 -11.09377 -11.04623 -10.97589 -10.57896 -10.53733 -10.46216 -10.35837 -10.31353 -9.96113 -9.74060 -9.60022 -9.07713 -8.82789 -8.58311 -8.44534 -7.36678 -5.84972 -3.21589 1.37212 1.47528 2.73234 3.10538 3.30126 3.32676 3.39844 3.81185 4.38758 4.49824 4.51292 4.55764 4.67350 4.72808 4.89367 4.98220 5.04181 5.08270 5.10272 5.19825 5.30642 5.36941 5.47738 5.57220 5.61122 5.61754 5.62096 5.65341 5.69285 5.77415 5.83553 5.85716 5.90066 5.97442 5.99335 6.02579 6.04535 6.10677 6.13848 6.16718 6.22355 6.26515 6.35080 6.41573 6.48777 6.53692 6.59661 6.60660 6.64194 6.81279 7.04730 7.79052 7.91431 8.30691 8.34298 9.11675 9.83862 10.02938 11.32972 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010681 B = 0.004452 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.898969 B = 6287.177869 C = 6956.402639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.610 5.610 6 C 0.564 3.436 7 O -0.550 6.550 8 C -0.063 4.063 9 C -0.062 4.062 10 C -0.108 4.108 11 C -0.111 4.111 12 C -0.120 4.120 13 C -0.119 4.119 14 C -0.111 4.111 15 C -0.110 4.110 16 C -0.141 4.141 17 C -0.129 4.129 18 C 0.073 3.927 19 C 0.184 3.816 20 H 0.071 0.929 21 N -0.740 5.740 22 C -0.248 4.248 23 H 0.091 0.909 24 C 0.010 3.990 25 N -0.930 5.930 26 Si 0.877 3.123 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.275 1.275 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.073 0.927 51 H 0.367 0.633 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.874 1.664 -11.498 16.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 C -0.187 4.187 4 C -0.006 4.006 5 N -0.343 5.343 6 C 0.353 3.647 7 O -0.428 6.428 8 C -0.066 4.066 9 C -0.063 4.063 10 C -0.126 4.126 11 C -0.129 4.129 12 C -0.138 4.138 13 C -0.137 4.137 14 C -0.129 4.129 15 C -0.148 4.148 16 C -0.178 4.178 17 C -0.166 4.166 18 C -0.053 4.053 19 C 0.072 3.928 20 H 0.089 0.911 21 N -0.384 5.384 22 C -0.377 4.377 23 H 0.109 0.891 24 C -0.186 4.186 25 N -0.577 5.577 26 Si 0.707 3.293 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.201 1.201 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.101 0.899 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.114 0.886 48 H 0.095 0.905 49 H 0.100 0.900 50 H 0.091 0.909 51 H 0.203 0.797 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 12.097 1.812 -11.894 17.061 hybrid contribution -1.382 -0.286 -0.214 1.427 sum 10.715 1.526 -12.108 16.240 Atomic orbital electron populations 1.21758 0.93696 1.01669 1.02050 1.21784 0.96167 0.95818 0.95456 1.21775 1.00561 0.94725 1.01657 1.22429 0.86322 0.95333 0.96562 1.48857 1.12193 1.54736 1.18468 1.19292 0.81570 0.78369 0.85508 1.90652 1.82543 1.52523 1.17132 1.20819 0.95407 0.94897 0.95454 1.19282 0.99135 0.94760 0.93096 1.21101 0.99248 1.00505 0.91747 1.21181 0.97875 0.94655 0.99191 1.21161 0.99775 0.96180 0.96687 1.21072 1.00253 0.99560 0.92820 1.20941 0.98728 0.93985 0.99214 1.22891 0.96274 0.96103 0.99528 1.22878 0.99899 0.97685 0.97345 1.23115 1.02583 0.92570 0.98367 1.23706 1.00371 0.99873 0.81318 1.21047 0.89736 0.91939 0.90066 0.91146 1.43015 1.08954 1.78984 1.07419 1.19076 0.98638 1.36858 0.83158 0.89123 1.24637 0.97470 1.01147 0.95376 1.69687 1.31835 1.50962 1.05244 0.86692 0.85683 0.78267 0.78691 1.21052 1.21663 1.20067 0.91024 0.93116 0.92617 0.92881 0.93027 0.92032 0.91417 0.90466 0.85509 0.85706 0.86200 0.86296 0.86424 0.89851 0.89331 0.90905 0.90086 0.88566 0.90462 0.90018 0.90897 0.79703 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.12 37.16 0.26 -1.76 16 2 C -0.09 -1.38 1.03 -153.11 -0.16 -1.54 16 3 C -0.13 -1.82 8.24 37.15 0.31 -1.52 16 4 C 0.12 1.73 6.12 -2.41 -0.01 1.71 16 5 N -0.61 -9.50 3.32 -169.31 -0.56 -10.06 16 6 C 0.56 8.89 6.35 -10.99 -0.07 8.82 16 7 O -0.55 -10.00 16.25 5.55 0.09 -9.91 16 8 C -0.06 -0.82 0.46 -156.00 -0.07 -0.89 16 9 C -0.06 -0.82 4.30 -104.62 -0.45 -1.27 16 10 C -0.11 -1.41 7.32 -39.58 -0.29 -1.70 16 11 C -0.11 -1.40 10.05 -39.58 -0.40 -1.80 16 12 C -0.12 -1.42 10.05 -39.58 -0.40 -1.81 16 13 C -0.12 -1.40 10.05 -39.59 -0.40 -1.80 16 14 C -0.11 -1.43 9.45 -39.59 -0.37 -1.81 16 15 C -0.11 -1.27 7.04 -25.78 -0.18 -1.46 16 16 C -0.14 -1.52 7.81 -25.78 -0.20 -1.73 16 17 C -0.13 -1.50 5.62 -25.92 -0.15 -1.65 16 18 C 0.07 1.20 5.37 -2.41 -0.01 1.19 16 19 C 0.18 3.32 3.34 -66.53 -0.22 3.10 16 20 H 0.07 1.38 7.66 -51.93 -0.40 0.98 16 21 N -0.74 -16.02 4.38 -52.07 -0.23 -16.24 16 22 C -0.25 -6.48 10.44 -15.06 -0.16 -6.63 16 23 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 24 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 25 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 26 Si 0.88 20.96 27.74 -169.99 -4.71 16.24 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.27 -6.08 6.52 56.52 0.37 -5.72 16 30 H 0.07 1.20 7.75 -51.93 -0.40 0.80 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.87 6.93 -51.93 -0.36 0.51 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.07 0.97 7.83 -51.93 -0.41 0.56 16 37 H 0.08 1.14 7.65 -51.93 -0.40 0.75 16 38 H 0.13 1.57 6.00 -52.49 -0.31 1.25 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 43 H 0.08 1.06 7.34 -51.93 -0.38 0.68 16 44 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 45 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.10 0.99 6.64 -51.93 -0.34 0.65 16 48 H 0.08 0.97 7.07 -51.93 -0.37 0.61 16 49 H 0.08 1.33 4.29 -51.93 -0.22 1.10 16 50 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 51 H 0.37 7.82 2.97 -40.82 -0.12 7.70 16 52 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -30.42 397.79 -10.09 -40.51 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: -8.37 Total: 12.94 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -3.07 Total: -12.35 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.01 Total: -53.42 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.71 Total: 16.24 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.42 -10.09 -40.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996014202.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.761 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds