Wall clock time and date at job start Wed Apr 1 2020 02:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 110.38657 * 2 1 4 4 C 1.54385 * 110.34350 * 237.76495 * 2 1 3 5 5 N 1.48146 * 104.61886 * 217.26383 * 4 2 1 6 6 C 1.34772 * 127.83908 * 219.59013 * 5 4 2 7 7 O 1.21287 * 120.00187 * 354.84980 * 6 5 4 8 8 C 1.50699 * 120.00255 * 174.85192 * 6 5 4 9 9 C 1.50704 * 112.84685 * 293.72307 * 8 6 5 10 10 C 1.38236 * 119.99526 * 116.85122 * 9 8 6 11 11 C 1.38238 * 119.99574 * 179.80791 * 10 9 8 12 12 C 1.38240 * 120.00116 * 0.42184 * 11 10 9 13 13 C 1.38236 * 119.99706 * 359.81375 * 12 11 10 14 14 C 1.38229 * 120.00055 * 359.97438 * 13 12 11 15 15 C 1.53782 * 113.61554 * 162.52990 * 8 6 5 16 16 C 1.54051 * 86.98094 * 270.83771 * 15 8 6 17 17 C 1.53780 * 113.61520 * 64.91712 * 8 6 5 18 18 C 1.48143 * 104.32208 * 39.58558 * 5 4 2 19 19 C 1.54291 * 110.33895 * 122.23033 * 2 1 3 20 20 H 1.09002 * 110.33981 * 237.74246 * 19 2 1 21 21 N 1.46498 * 110.34474 * 359.89543 * 19 2 1 22 22 C 1.36935 * 120.00214 * 204.99947 * 21 19 2 23 23 H 1.07998 * 119.99615 * 0.02562 * 22 21 19 24 24 C 1.38811 * 120.00121 * 179.97438 * 22 21 19 25 25 N 1.31621 * 120.00032 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 120.00111 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.47500 * 89.99540 * 26 24 22 28 28 H 1.48499 * 109.47383 * 209.99833 * 26 24 22 29 29 H 1.48500 * 109.47133 * 329.99667 * 26 24 22 30 30 H 1.09003 * 109.47539 * 297.77145 * 1 2 3 31 31 H 1.09003 * 109.47186 * 57.76867 * 1 2 3 32 32 H 1.08997 * 109.47246 * 177.76863 * 1 2 3 33 33 H 1.09003 * 109.47048 * 182.22596 * 3 2 1 34 34 H 1.08998 * 109.47695 * 302.23027 * 3 2 1 35 35 H 1.09008 * 109.47461 * 62.23085 * 3 2 1 36 36 H 1.09000 * 110.40941 * 336.05011 * 4 2 1 37 37 H 1.09006 * 110.40531 * 98.47764 * 4 2 1 38 38 H 1.07995 * 120.00604 * 359.97438 * 10 9 8 39 39 H 1.08000 * 119.99865 * 180.20565 * 11 10 9 40 40 H 1.08001 * 119.99784 * 179.78701 * 12 11 10 41 41 H 1.08001 * 119.99741 * 179.97438 * 13 12 11 42 42 H 1.08004 * 120.00120 * 179.97438 * 14 13 12 43 43 H 1.08991 * 113.61486 * 25.42854 * 15 8 6 44 44 H 1.09001 * 113.61436 * 156.33477 * 15 8 6 45 45 H 1.09008 * 113.61538 * 220.02185 * 16 15 8 46 46 H 1.08994 * 113.69239 * 89.12799 * 16 15 8 47 47 H 1.08994 * 113.61483 * 203.66598 * 17 8 6 48 48 H 1.08998 * 113.61485 * 334.49079 * 17 8 6 49 49 H 1.09000 * 110.40594 * 201.62811 * 18 5 4 50 50 H 1.08998 * 110.40821 * 79.20181 * 18 5 4 51 51 H 0.97005 * 120.00051 * 25.00128 * 21 19 2 52 52 H 0.96994 * 120.00195 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4341 0.0000 4 6 2.0667 -0.7721 -1.2244 5 7 3.2664 -1.4817 -0.7225 6 6 4.4424 -1.6664 -1.3544 7 8 4.5756 -1.3070 -2.5051 8 6 5.5919 -2.3196 -0.6312 9 6 6.1163 -1.4848 0.5087 10 6 6.0369 -1.9577 1.8052 11 6 6.5215 -1.1936 2.8504 12 6 7.0774 0.0470 2.6000 13 6 7.1522 0.5219 1.3039 14 6 6.6717 -0.2439 0.2584 15 6 6.6928 -2.8421 -1.5692 16 6 5.9054 -4.1651 -1.6232 17 6 5.3267 -3.7856 -0.2499 18 6 2.8801 -1.9422 0.6315 19 6 2.0663 -0.7716 1.2238 20 1 2.7094 -0.1288 1.8249 21 7 0.9553 -1.2788 2.0330 22 6 1.1376 -1.5270 3.3672 23 1 2.1002 -1.3484 3.8231 24 6 0.0848 -2.0071 4.1341 25 7 0.2601 -2.2461 5.4165 26 14 -1.5804 -2.3152 3.3457 27 1 -1.6384 -3.7105 2.8405 28 1 -2.6511 -2.1089 4.3537 29 1 -1.7755 -1.3713 2.2161 30 1 -0.3634 0.4788 0.9093 31 1 -0.3634 0.5481 -0.8693 32 1 -0.3633 -1.0268 -0.0400 33 1 3.1521 1.4170 -0.0399 34 1 1.6758 1.9657 -0.8693 35 1 1.7407 1.9416 0.9094 36 1 1.3235 -1.4861 -1.5793 37 1 2.3400 -0.0795 -2.0206 38 1 5.5989 -2.9251 2.0014 39 1 6.4626 -1.5645 3.8631 40 1 7.4528 0.6454 3.4170 41 1 7.5862 1.4914 1.1083 42 1 6.7298 0.1273 -0.7542 43 1 6.7368 -2.3193 -2.5245 44 1 7.6676 -2.9334 -1.0902 45 1 6.5392 -5.0517 -1.6000 46 1 5.1595 -4.1988 -2.4172 47 1 5.9287 -4.1343 0.5891 48 1 4.2688 -4.0235 -0.1396 49 1 3.7672 -2.1325 1.2357 50 1 2.2639 -2.8389 0.5666 51 1 0.0906 -1.4388 1.6236 52 1 -0.4754 -2.5819 5.9522 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996014202.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:43 Heat of formation + Delta-G solvation = 22.084076 kcal Electronic energy + Delta-G solvation = -32193.217119 eV Core-core repulsion = 28351.209939 eV Total energy + Delta-G solvation = -3842.007180 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.26767 -40.51637 -39.42970 -38.00748 -35.96646 -34.64263 -33.05986 -32.19643 -31.85596 -29.57635 -28.39924 -28.27509 -26.93954 -26.12521 -25.48203 -23.51322 -23.10300 -22.66607 -21.75405 -20.44394 -19.43611 -19.26307 -18.40810 -17.53810 -17.08071 -16.94564 -16.47771 -16.11475 -15.90096 -15.70931 -15.59220 -15.29000 -15.12580 -14.74662 -14.56098 -14.33276 -14.27436 -14.01317 -13.84744 -13.47139 -13.39475 -13.24089 -13.13459 -12.96486 -12.87688 -12.74395 -12.56203 -12.48286 -12.17957 -12.06881 -11.99987 -11.94926 -11.84341 -11.59830 -11.42377 -11.38155 -11.27531 -11.01689 -10.89543 -9.86413 -9.77230 -9.58600 -9.27421 -7.98295 -5.32133 0.38806 0.48804 1.39764 1.41663 1.48998 1.49646 1.88118 2.50804 2.82258 3.28769 3.31922 3.42450 3.58324 3.58846 3.64949 3.72430 3.80564 3.82766 3.93494 4.11387 4.13334 4.28260 4.29568 4.33979 4.35918 4.46458 4.58293 4.63107 4.67039 4.70537 4.73234 4.77641 4.79879 4.85042 4.94467 4.95318 4.96158 5.01274 5.05174 5.05800 5.09715 5.11952 5.14125 5.26299 5.33645 5.37417 5.45424 5.57505 5.63046 5.64576 5.82503 6.08763 6.24857 6.50847 7.04590 7.11304 7.84969 8.05192 9.22715 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010681 B = 0.004452 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.898969 B = 6287.177869 C = 6956.402639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 C -0.125 4.125 4 C 0.116 3.884 5 N -0.609 5.609 6 C 0.563 3.437 7 O -0.575 6.575 8 C -0.069 4.069 9 C -0.067 4.067 10 C -0.119 4.119 11 C -0.124 4.124 12 C -0.124 4.124 13 C -0.119 4.119 14 C -0.123 4.123 15 C -0.104 4.104 16 C -0.133 4.133 17 C -0.127 4.127 18 C 0.085 3.915 19 C 0.179 3.821 20 H 0.052 0.948 21 N -0.739 5.739 22 C -0.225 4.225 23 H 0.060 0.940 24 C -0.055 4.055 25 N -0.980 5.980 26 Si 0.938 3.062 27 H -0.280 1.280 28 H -0.300 1.300 29 H -0.246 1.246 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.068 0.932 47 H 0.111 0.889 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.068 0.932 51 H 0.372 0.628 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.912 1.987 -13.328 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.084 4.084 3 C -0.182 4.182 4 C -0.007 4.007 5 N -0.341 5.341 6 C 0.353 3.647 7 O -0.455 6.455 8 C -0.071 4.071 9 C -0.068 4.068 10 C -0.137 4.137 11 C -0.142 4.142 12 C -0.142 4.142 13 C -0.137 4.137 14 C -0.141 4.141 15 C -0.142 4.142 16 C -0.170 4.170 17 C -0.164 4.164 18 C -0.040 4.040 19 C 0.069 3.931 20 H 0.070 0.930 21 N -0.384 5.384 22 C -0.356 4.356 23 H 0.078 0.922 24 C -0.247 4.247 25 N -0.631 5.631 26 Si 0.765 3.235 27 H -0.207 1.207 28 H -0.227 1.227 29 H -0.170 1.170 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.087 0.913 47 H 0.129 0.871 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.209 0.791 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.154 2.156 -13.786 18.504 hybrid contribution -1.273 -0.312 0.353 1.357 sum 10.881 1.844 -13.433 17.385 Atomic orbital electron populations 1.21746 0.93002 1.01752 1.02611 1.21726 0.96695 0.96165 0.93863 1.21731 1.00079 0.93987 1.02411 1.22503 0.86262 0.95599 0.96304 1.48859 1.12622 1.54708 1.17905 1.19729 0.81891 0.77832 0.85263 1.90635 1.82952 1.53652 1.18273 1.20872 0.95062 0.95436 0.95778 1.19301 0.99446 0.94996 0.93039 1.21189 0.99712 1.00860 0.91936 1.21408 0.98087 0.95222 0.99515 1.21447 0.99260 0.96024 0.97447 1.21350 0.99606 1.00288 0.92482 1.21058 0.99263 0.94229 0.99516 1.22897 0.96640 0.96066 0.98589 1.22834 0.99661 0.98329 0.96220 1.23147 1.02233 0.91530 0.99483 1.23376 1.00032 0.98730 0.81886 1.21142 0.88801 0.92490 0.90685 0.93030 1.42937 1.10235 1.79136 1.06043 1.18994 0.97074 1.34577 0.84910 0.92243 1.25344 1.01390 1.02145 0.95810 1.69861 1.32848 1.53301 1.07055 0.85684 0.80637 0.78773 0.78356 1.20668 1.22732 1.16997 0.92732 0.90069 0.92944 0.93641 0.90674 0.92715 0.90385 0.89934 0.85375 0.85093 0.84157 0.84098 0.86659 0.91115 0.87700 0.88550 0.91287 0.87125 0.91609 0.89963 0.91424 0.79108 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 7.12 71.98 0.51 -3.14 16 2 C -0.08 -2.38 1.03 -51.28 -0.05 -2.44 16 3 C -0.12 -3.27 8.24 71.98 0.59 -2.68 16 4 C 0.12 3.21 6.12 86.53 0.53 3.74 16 5 N -0.61 -18.38 3.32 -807.97 -2.68 -21.06 16 6 C 0.56 17.32 6.35 87.66 0.56 17.88 16 7 O -0.57 -20.49 16.25 -3.05 -0.05 -20.54 16 8 C -0.07 -1.74 0.46 -53.15 -0.02 -1.76 16 9 C -0.07 -1.73 4.30 -19.86 -0.09 -1.82 16 10 C -0.12 -3.06 7.32 22.27 0.16 -2.89 16 11 C -0.12 -3.08 10.05 22.27 0.22 -2.86 16 12 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 13 C -0.12 -2.66 10.05 22.27 0.22 -2.43 16 14 C -0.12 -3.07 9.45 22.27 0.21 -2.86 16 15 C -0.10 -2.28 7.04 31.21 0.22 -2.06 16 16 C -0.13 -2.68 7.81 31.21 0.24 -2.43 16 17 C -0.13 -2.81 5.62 31.12 0.17 -2.64 16 18 C 0.09 2.77 5.37 86.53 0.46 3.24 16 19 C 0.18 6.38 3.34 45.90 0.15 6.54 16 20 H 0.05 2.04 7.66 -2.39 -0.02 2.03 16 21 N -0.74 -31.51 4.38 -318.65 -1.40 -32.91 16 22 C -0.22 -11.90 10.44 84.03 0.88 -11.02 16 23 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 24 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 25 N -0.98 -60.32 13.97 21.65 0.30 -60.01 16 26 Si 0.94 43.00 27.74 68.60 1.90 44.90 16 27 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 28 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 29 H -0.25 -9.95 6.52 99.48 0.65 -9.30 16 30 H 0.05 1.70 7.75 -2.39 -0.02 1.68 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.47 6.93 -2.39 -0.02 1.46 16 33 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.08 2.03 7.83 -2.39 -0.02 2.01 16 37 H 0.08 2.25 7.65 -2.38 -0.02 2.23 16 38 H 0.13 3.15 6.00 -2.91 -0.02 3.14 16 39 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 40 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 42 H 0.12 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.07 1.74 7.34 -2.39 -0.02 1.72 16 44 H 0.10 1.94 8.09 -2.39 -0.02 1.92 16 45 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.11 2.13 6.64 -2.39 -0.02 2.12 16 48 H 0.07 1.61 7.07 -2.39 -0.02 1.59 16 49 H 0.08 2.68 4.29 -2.39 -0.01 2.67 16 50 H 0.07 2.30 8.06 -2.39 -0.02 2.28 16 51 H 0.37 15.20 2.97 -92.70 -0.28 14.92 16 52 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -66.12 397.79 4.33 -61.78 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: 0.58 Total: 42.64 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 5.68 Total: -14.81 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -3.77 Total: -113.98 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.05 Total: -20.54 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.90 Total: 44.90 kcal Total: -66.12 4.33 -61.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996014202.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.869 kcal (2) G-P(sol) polarization free energy of solvation -66.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds