Wall clock time and date at job start Wed Apr 1 2020 02:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 115.55002 * 2 1 4 4 C 1.38237 * 119.99771 * 65.99057 * 3 2 1 5 5 C 1.38238 * 119.99895 * 179.72354 * 4 3 2 6 6 C 1.38234 * 119.99634 * 0.26593 * 5 4 3 7 7 C 1.38232 * 120.00545 * 0.02562 * 6 5 4 8 8 C 1.38235 * 119.99725 * 359.96195 * 7 6 5 9 9 C 1.53000 * 117.50175 * 214.33244 * 2 1 3 10 10 C 1.53000 * 117.50166 * 145.67207 * 2 1 3 11 11 H 1.08998 * 117.49680 * 359.97438 * 10 2 1 12 12 C 1.50698 * 117.49787 * 215.00537 * 10 2 1 13 13 O 1.21282 * 120.00096 * 278.33011 * 12 10 2 14 14 N 1.34773 * 120.00385 * 98.33253 * 12 10 2 15 15 C 1.47025 * 125.64608 * 0.02562 * 14 12 10 16 16 C 1.54325 * 107.27030 * 181.02397 * 15 14 12 17 17 H 1.09003 * 110.71902 * 140.56262 * 16 15 14 18 18 N 1.46505 * 110.71950 * 263.82773 * 16 15 14 19 19 C 1.36936 * 120.00096 * 273.54763 * 18 16 15 20 20 H 1.07999 * 119.99920 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99722 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99772 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00074 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47620 * 89.99896 * 23 21 19 25 25 H 1.48506 * 109.47218 * 209.99748 * 23 21 19 26 26 H 1.48502 * 109.47259 * 329.99607 * 23 21 19 27 27 C 1.55152 * 102.94191 * 22.19478 * 16 15 14 28 28 C 1.53001 * 111.00460 * 82.57320 * 27 16 15 29 29 C 1.53001 * 111.00288 * 206.42280 * 27 16 15 30 30 C 1.47424 * 125.65079 * 179.71797 * 14 12 10 31 31 H 1.09003 * 109.47415 * 34.41461 * 1 2 3 32 32 H 1.09001 * 109.47052 * 154.41463 * 1 2 3 33 33 H 1.08996 * 109.47198 * 274.41671 * 1 2 3 34 34 H 1.08003 * 120.00065 * 0.02562 * 4 3 2 35 35 H 1.08001 * 119.99869 * 180.27998 * 5 4 3 36 36 H 1.08006 * 119.99548 * 179.97438 * 6 5 4 37 37 H 1.08003 * 120.00202 * 179.97438 * 7 6 5 38 38 H 1.08005 * 119.99790 * 180.02562 * 8 7 6 39 39 H 1.09002 * 117.49665 * 359.97426 * 9 2 1 40 40 H 1.09000 * 117.50246 * 144.99400 * 9 2 1 41 41 H 1.08995 * 109.88343 * 300.44515 * 15 14 12 42 42 H 1.08999 * 109.88370 * 61.45264 * 15 14 12 43 43 H 0.97000 * 119.99445 * 93.55172 * 18 16 15 44 44 H 0.97003 * 119.99724 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.47143 * 59.99994 * 28 27 16 46 46 H 1.09001 * 109.46892 * 179.97438 * 28 27 16 47 47 H 1.08991 * 109.47031 * 299.99874 * 28 27 16 48 48 H 1.08996 * 109.47015 * 59.99858 * 29 27 16 49 49 H 1.09003 * 109.47357 * 180.02562 * 29 27 16 50 50 H 1.08997 * 109.47044 * 299.99929 * 29 27 16 51 51 H 1.08998 * 110.36325 * 274.73979 * 30 14 12 52 52 H 1.08995 * 110.36689 * 37.06447 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1799 1.3597 0.0000 4 6 2.0385 2.1933 1.0936 5 6 2.6395 3.4383 1.0960 6 6 3.3772 3.8516 0.0025 7 6 3.5136 3.0204 -1.0936 8 6 2.9129 1.7755 -1.0958 9 6 2.2365 -1.1207 -0.7654 10 6 2.2365 -1.1207 0.7653 11 1 1.6112 -1.8578 1.2692 12 6 3.5289 -0.7804 1.4615 13 8 4.5666 -0.7526 0.8342 14 7 3.5319 -0.5070 2.7812 15 6 2.3521 -0.5053 3.6585 16 6 2.8325 -0.1126 5.0715 17 1 2.1124 0.5485 5.5538 18 7 3.0708 -1.3054 5.8881 19 6 2.0395 -1.8744 6.5864 20 1 1.0502 -1.4441 6.5349 21 6 2.2653 -3.0049 7.3596 22 7 1.2740 -3.5516 8.0312 23 14 3.9761 -3.7496 7.4480 24 1 4.7262 -3.1347 8.5725 25 1 3.8677 -5.2143 7.6677 26 1 4.6945 -3.4920 6.1742 27 6 4.1625 0.6354 4.7910 28 6 3.9016 2.0946 4.4119 29 6 5.1071 0.5434 5.9911 30 6 4.7196 -0.1664 3.5854 31 1 -0.3634 0.8478 -0.5808 32 1 -0.3633 -0.9269 -0.4438 33 1 -0.3633 0.0791 1.0246 34 1 1.4626 1.8701 1.9482 35 1 2.5328 4.0877 1.9523 36 1 3.8464 4.8245 0.0042 37 1 4.0897 3.3436 -1.9481 38 1 3.0198 1.1258 -1.9520 39 1 1.6112 -1.8582 -1.2686 40 1 3.1713 -0.8746 -1.2690 41 1 1.6240 0.2218 3.2991 42 1 1.9043 -1.4988 3.6795 43 1 3.9593 -1.6921 5.9340 44 1 1.4319 -4.3413 8.5719 45 1 3.3847 2.5958 5.2302 46 1 4.8507 2.5956 4.2210 47 1 3.2838 2.1319 3.5148 48 1 5.3315 -0.5030 6.1975 49 1 6.0313 1.0764 5.7678 50 1 4.6312 0.9918 6.8632 51 1 5.2185 -1.0729 3.9278 52 1 5.4065 0.4498 3.0054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996073012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:53 Heat of formation + Delta-G solvation = 30.178281 kcal Electronic energy + Delta-G solvation = -31829.692316 eV Core-core repulsion = 27988.036127 eV Total energy + Delta-G solvation = -3841.656189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.64158 -39.41590 -38.19057 -36.57762 -34.03848 -33.21260 -31.12338 -31.01159 -30.72147 -28.79586 -28.26560 -26.93000 -26.74161 -23.93982 -23.23734 -23.22414 -22.24423 -21.30108 -19.83138 -19.13441 -18.60986 -17.60884 -17.11883 -16.54050 -15.89000 -15.37381 -15.06429 -14.92512 -14.58653 -14.46310 -14.31683 -13.95324 -13.61636 -13.50833 -13.35088 -13.03288 -12.84469 -12.80962 -12.67088 -12.49295 -12.31573 -12.16334 -12.08567 -11.75846 -11.75201 -11.65244 -11.31226 -11.19805 -11.12278 -10.99962 -10.68258 -10.57171 -10.38201 -10.30042 -10.10768 -9.92995 -9.64884 -9.55269 -9.04485 -8.93212 -8.73223 -8.25457 -7.39048 -5.86363 -3.22964 1.28621 1.37741 2.73038 3.22504 3.31482 3.34517 3.40394 3.64784 3.78394 4.39352 4.51037 4.56305 4.64733 4.74052 4.86279 4.92028 4.96250 4.98514 5.05088 5.07715 5.19962 5.28297 5.39503 5.47593 5.48421 5.55516 5.59157 5.64969 5.65586 5.66687 5.70403 5.83080 5.85015 5.92465 5.95121 5.98291 6.01022 6.04307 6.08378 6.09784 6.16404 6.23921 6.26805 6.43116 6.45780 6.47240 6.56709 6.59080 6.66934 6.69086 6.94977 7.86986 7.89038 8.32634 8.46463 9.09929 9.82614 10.01415 11.31451 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014103 B = 0.003792 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.884117 B = 7381.249022 C = 8089.735643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 C -0.048 4.048 4 C -0.101 4.101 5 C -0.118 4.118 6 C -0.123 4.123 7 C -0.122 4.122 8 C -0.103 4.103 9 C -0.139 4.139 10 C -0.168 4.168 11 H 0.128 0.872 12 C 0.561 3.439 13 O -0.551 6.551 14 N -0.599 5.599 15 C 0.076 3.924 16 C 0.185 3.815 17 H 0.078 0.922 18 N -0.737 5.737 19 C -0.249 4.249 20 H 0.092 0.908 21 C 0.011 3.989 22 N -0.930 5.930 23 Si 0.878 3.122 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.278 1.278 27 C -0.090 4.090 28 C -0.131 4.131 29 C -0.127 4.127 30 C 0.121 3.879 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.363 0.637 44 H 0.260 0.740 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.065 0.935 51 H 0.063 0.937 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 13.527 -16.541 21.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.067 4.067 3 C -0.048 4.048 4 C -0.119 4.119 5 C -0.136 4.136 6 C -0.141 4.141 7 C -0.140 4.140 8 C -0.121 4.121 9 C -0.176 4.176 10 C -0.189 4.189 11 H 0.146 0.854 12 C 0.349 3.651 13 O -0.430 6.430 14 N -0.332 5.332 15 C -0.050 4.050 16 C 0.074 3.926 17 H 0.095 0.905 18 N -0.380 5.380 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.185 4.185 22 N -0.577 5.577 23 Si 0.708 3.292 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.091 4.091 28 C -0.188 4.188 29 C -0.185 4.185 30 C -0.002 4.002 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.198 0.802 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.081 0.919 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.789 13.436 -16.802 21.588 hybrid contribution 1.155 -0.925 0.272 1.505 sum 2.944 12.512 -16.530 20.939 Atomic orbital electron populations 1.21362 0.90454 1.02399 1.02669 1.20219 0.94684 0.87820 1.03998 1.18959 0.97750 0.93562 0.94487 1.20962 0.99530 0.93821 0.97597 1.21095 0.97886 0.96314 0.98314 1.21115 0.99306 0.99670 0.93978 1.21076 0.99895 0.94440 0.98555 1.20973 0.97027 0.96091 0.98025 1.23212 1.02654 0.99613 0.92121 1.22420 0.97922 1.03018 0.95576 0.85419 1.19087 0.89235 0.76322 0.80454 1.90648 1.33821 1.53479 1.65048 1.48252 1.10080 1.67796 1.07024 1.23168 0.87384 1.02053 0.92357 1.21178 0.93794 0.88878 0.88794 0.90460 1.42813 1.09440 1.30392 1.55322 1.19034 0.90703 1.07695 1.20379 0.88989 1.24631 0.96670 0.97978 0.99233 1.69690 1.30212 1.23687 1.34067 0.86662 0.85700 0.79035 0.77795 1.20863 1.21650 1.20382 1.22060 0.97131 0.95258 0.94696 1.21707 1.01491 0.94131 1.01501 1.21600 0.97774 1.02117 0.97020 1.22272 0.88142 0.98491 0.91270 0.91683 0.91723 0.91508 0.86129 0.86111 0.86400 0.86327 0.86217 0.87701 0.87488 0.92566 0.90428 0.80200 0.92947 0.92222 0.92856 0.92261 0.92346 0.93212 0.91614 0.91906 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.78 37.15 0.36 -0.66 16 2 C -0.07 -0.75 2.28 -155.66 -0.35 -1.10 16 3 C -0.05 -0.57 4.11 -104.62 -0.43 -1.00 16 4 C -0.10 -1.19 8.89 -39.58 -0.35 -1.54 16 5 C -0.12 -1.27 9.77 -39.58 -0.39 -1.66 16 6 C -0.12 -1.28 10.05 -39.58 -0.40 -1.67 16 7 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 8 C -0.10 -1.21 9.22 -39.58 -0.37 -1.58 16 9 C -0.14 -1.58 8.88 -26.69 -0.24 -1.82 16 10 C -0.17 -2.26 5.11 -91.74 -0.47 -2.73 16 11 H 0.13 1.65 8.13 -51.93 -0.42 1.22 16 12 C 0.56 9.37 6.57 -10.99 -0.07 9.30 16 13 O -0.55 -10.82 16.60 5.56 0.09 -10.73 16 14 N -0.60 -9.73 3.31 -170.38 -0.56 -10.30 16 15 C 0.08 1.22 5.89 -3.06 -0.02 1.21 16 16 C 0.19 3.19 2.86 -66.10 -0.19 3.00 16 17 H 0.08 1.34 8.03 -51.93 -0.42 0.92 16 18 N -0.74 -15.97 4.42 -51.65 -0.23 -16.20 16 19 C -0.25 -6.50 10.46 -15.06 -0.16 -6.66 16 20 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 21 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 22 N -0.93 -28.06 13.97 55.49 0.78 -27.29 16 23 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 27 C -0.09 -1.32 0.83 -152.24 -0.13 -1.44 16 28 C -0.13 -1.60 8.59 37.16 0.32 -1.28 16 29 C -0.13 -1.85 8.22 37.16 0.31 -1.55 16 30 C 0.12 1.95 5.82 -2.41 -0.01 1.93 16 31 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.06 0.52 7.90 -51.93 -0.41 0.11 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.12 1.38 7.07 -52.48 -0.37 1.01 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 37 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 38 H 0.12 1.27 7.07 -52.48 -0.37 0.90 16 39 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 40 H 0.11 1.35 6.77 -51.93 -0.35 1.00 16 41 H 0.06 0.79 7.15 -51.93 -0.37 0.42 16 42 H 0.08 1.42 8.05 -51.93 -0.42 1.00 16 43 H 0.36 8.00 3.96 -40.82 -0.16 7.84 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.73 6.87 -51.93 -0.36 0.37 16 48 H 0.06 0.95 6.37 -51.93 -0.33 0.62 16 49 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 51 H 0.06 1.10 7.99 -51.93 -0.41 0.68 16 52 H 0.07 1.13 7.95 -51.93 -0.41 0.72 16 LS Contribution 410.33 15.07 6.18 6.18 Total: -1.00 -31.62 410.33 -10.15 -41.77 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -8.62 Total: 10.54 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -3.07 Total: -10.75 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.02 Total: -53.79 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.62 -10.15 -41.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996073012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.949 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds