Wall clock time and date at job start Wed Apr 1 2020 02:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 115.55000 * 2 1 4 4 C 1.38228 * 120.00501 * 41.30124 * 3 2 1 5 5 C 1.38230 * 120.00388 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99716 * 0.27650 * 5 4 3 7 7 C 1.38233 * 119.99917 * 359.51061 * 6 5 4 8 8 C 1.38233 * 120.00112 * 0.44969 * 7 6 5 9 9 C 1.52996 * 117.49914 * 214.31938 * 2 1 3 10 10 C 1.52998 * 60.00267 * 252.49231 * 9 2 1 11 11 H 1.09003 * 117.49724 * 107.49215 * 10 9 2 12 12 C 1.50694 * 117.49828 * 252.51188 * 10 9 2 13 13 O 1.21284 * 120.00432 * 77.92252 * 12 10 9 14 14 N 1.34777 * 120.00039 * 257.92260 * 12 10 9 15 15 C 1.47022 * 125.64784 * 0.02562 * 14 12 10 16 16 C 1.54325 * 107.27027 * 181.02651 * 15 14 12 17 17 H 1.09006 * 110.71834 * 263.82567 * 16 15 14 18 18 N 1.46507 * 110.72014 * 140.55894 * 16 15 14 19 19 C 1.36937 * 119.99990 * 86.45099 * 18 16 15 20 20 H 1.07996 * 119.99895 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99565 * 180.02562 * 19 18 16 22 22 N 1.31622 * 120.00160 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99851 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46882 * 59.99758 * 23 21 19 25 25 H 1.48497 * 109.47195 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47295 * 300.00228 * 23 21 19 27 27 C 1.55152 * 102.94267 * 22.19235 * 16 15 14 28 28 C 1.52997 * 111.00551 * 82.57537 * 27 16 15 29 29 C 1.53007 * 111.00471 * 206.42314 * 27 16 15 30 30 C 1.47422 * 125.64971 * 179.71951 * 14 12 10 31 31 H 1.09009 * 109.47073 * 34.42411 * 1 2 3 32 32 H 1.08997 * 109.47234 * 154.41893 * 1 2 3 33 33 H 1.08996 * 109.47422 * 274.42371 * 1 2 3 34 34 H 1.08005 * 119.99645 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.00109 * 179.97438 * 5 4 3 36 36 H 1.08001 * 119.99588 * 179.72169 * 6 5 4 37 37 H 1.08000 * 120.00081 * 180.27787 * 7 6 5 38 38 H 1.07995 * 120.00029 * 179.83495 * 8 7 6 39 39 H 1.09002 * 117.49791 * 359.97438 * 9 2 1 40 40 H 1.09003 * 117.49267 * 144.97538 * 9 2 1 41 41 H 1.09004 * 109.88097 * 300.44129 * 15 14 12 42 42 H 1.08996 * 109.88246 * 61.60411 * 15 14 12 43 43 H 0.97000 * 119.99339 * 266.44995 * 18 16 15 44 44 H 0.97004 * 119.99742 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.47436 * 59.99579 * 28 27 16 46 46 H 1.09002 * 109.47488 * 179.97438 * 28 27 16 47 47 H 1.08995 * 109.47024 * 299.99796 * 28 27 16 48 48 H 1.09004 * 109.46697 * 60.00010 * 29 27 16 49 49 H 1.08996 * 109.47400 * 180.02562 * 29 27 16 50 50 H 1.09006 * 109.47091 * 300.00456 * 29 27 16 51 51 H 1.09004 * 110.36939 * 274.74369 * 30 14 12 52 52 H 1.09003 * 110.36938 * 37.06294 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1799 1.3596 0.0000 4 6 1.6668 2.3711 0.7901 5 6 2.2633 3.6181 0.7904 6 6 3.3697 3.8552 -0.0037 7 6 3.8856 2.8424 -0.7904 8 6 3.2895 1.5952 -0.7902 9 6 2.2364 -1.1208 -0.7651 10 6 2.2368 -1.1209 0.7648 11 1 1.6118 -1.8586 1.2682 12 6 3.5297 -0.7808 1.4603 13 8 3.8868 0.3751 1.5454 14 7 4.2893 -1.7612 1.9879 15 6 3.9776 -3.1977 1.9561 16 6 5.1134 -3.9296 2.7017 17 1 5.8598 -4.3003 1.9990 18 7 4.5782 -5.0233 3.5164 19 6 4.3828 -6.2592 2.9601 20 1 4.6229 -6.4276 1.9207 21 6 3.8752 -7.2953 3.7320 22 7 3.5822 -7.0898 4.9986 23 14 3.6080 -8.9811 2.9731 24 1 4.9021 -9.5085 2.4708 25 1 3.0622 -9.9051 3.9995 26 1 2.6479 -8.8699 1.8457 27 6 5.7119 -2.8165 3.6017 28 6 4.8970 -2.6525 4.8862 29 6 7.1816 -3.0995 3.9198 30 6 5.5733 -1.5715 2.6868 31 1 -0.3634 0.8478 -0.5810 32 1 -0.3633 -0.9269 -0.4437 33 1 -0.3634 0.0793 1.0245 34 1 0.7996 2.1871 1.4071 35 1 1.8620 4.4085 1.4074 36 1 3.8330 4.8308 -0.0068 37 1 4.7527 3.0264 -1.4074 38 1 3.6910 0.8048 -1.4069 39 1 1.6112 -1.8585 -1.2682 40 1 3.1711 -0.8746 -1.2690 41 1 3.0268 -3.3819 2.4564 42 1 3.9286 -3.5436 0.9237 43 1 4.3623 -4.8718 4.4499 44 1 3.2278 -7.8139 5.5381 45 1 4.9009 -3.5906 5.4413 46 1 5.3385 -1.8665 5.4988 47 1 3.8713 -2.3839 4.6338 48 1 7.7522 -3.1432 2.9920 49 1 7.5761 -2.3043 4.5522 50 1 7.2633 -4.0529 4.4419 51 1 6.3933 -1.5316 1.9697 52 1 5.5481 -0.6615 3.2863 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996073026.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:58 Heat of formation + Delta-G solvation = 34.204463 kcal Electronic energy + Delta-G solvation = -30819.419206 eV Core-core repulsion = 26977.937605 eV Total energy + Delta-G solvation = -3841.481601 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.60763 -39.37705 -37.92806 -36.52340 -34.09027 -33.10362 -30.99955 -30.82773 -30.50338 -28.74410 -27.52137 -27.00778 -26.61156 -24.02081 -23.49251 -23.10456 -22.15369 -21.28758 -19.73988 -18.90343 -18.44318 -17.26463 -17.11776 -16.45636 -15.77953 -15.33181 -15.08011 -14.66801 -14.51244 -14.31341 -14.06330 -13.78752 -13.55038 -13.53912 -13.37046 -13.22135 -12.89731 -12.69815 -12.53978 -12.38261 -12.20616 -12.07085 -11.99024 -11.82529 -11.53796 -11.24285 -11.06282 -11.05255 -10.95284 -10.91316 -10.61530 -10.49585 -10.40167 -10.27371 -10.13728 -9.89467 -9.69172 -9.56680 -9.00849 -8.73982 -8.29766 -8.20697 -7.10370 -5.87260 -3.17482 1.49766 1.58536 2.75817 3.21488 3.37555 3.42885 3.43471 3.66531 4.02889 4.44947 4.52400 4.59579 4.68109 4.81060 4.84539 5.06720 5.07689 5.09827 5.16474 5.20183 5.24431 5.44979 5.49890 5.53912 5.58730 5.60683 5.63868 5.73369 5.74332 5.79519 5.81403 5.86116 5.87631 5.98864 6.00130 6.03506 6.13197 6.15986 6.17055 6.25030 6.34091 6.37634 6.45922 6.60728 6.62863 6.63620 6.66901 6.75335 6.75886 6.90084 7.15965 7.60826 7.88383 8.31118 8.48651 9.43146 9.97799 10.32916 11.34798 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.002939 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.612488 B = 9524.751389 C =10586.013331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.064 4.064 3 C -0.010 4.010 4 C -0.107 4.107 5 C -0.119 4.119 6 C -0.130 4.130 7 C -0.116 4.116 8 C -0.098 4.098 9 C -0.146 4.146 10 C -0.166 4.166 11 H 0.127 0.873 12 C 0.550 3.450 13 O -0.532 6.532 14 N -0.608 5.608 15 C 0.076 3.924 16 C 0.181 3.819 17 H 0.064 0.936 18 N -0.712 5.712 19 C -0.248 4.248 20 H 0.071 0.929 21 C -0.008 4.008 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.086 4.086 28 C -0.131 4.131 29 C -0.129 4.129 30 C 0.120 3.880 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.390 0.610 44 H 0.257 0.743 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.067 0.933 51 H 0.062 0.938 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 17.062 -9.540 19.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.065 4.065 3 C -0.010 4.010 4 C -0.126 4.126 5 C -0.137 4.137 6 C -0.148 4.148 7 C -0.134 4.134 8 C -0.116 4.116 9 C -0.183 4.183 10 C -0.187 4.187 11 H 0.145 0.855 12 C 0.338 3.662 13 O -0.409 6.409 14 N -0.341 5.341 15 C -0.050 4.050 16 C 0.068 3.932 17 H 0.082 0.918 18 N -0.354 5.354 19 C -0.379 4.379 20 H 0.089 0.911 21 C -0.204 4.204 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.088 4.088 28 C -0.188 4.188 29 C -0.187 4.187 30 C -0.002 4.002 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.227 0.773 44 H 0.067 0.933 45 H 0.091 0.909 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.086 0.914 51 H 0.080 0.920 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.542 17.533 -9.582 20.039 hybrid contribution -0.242 -1.194 0.024 1.218 sum -1.784 16.339 -9.558 19.013 Atomic orbital electron populations 1.21357 0.90755 1.02481 1.02407 1.20241 0.94594 0.88303 1.03359 1.18669 0.94593 0.92155 0.95611 1.20740 1.00232 0.92958 0.98630 1.20970 0.96618 0.96852 0.99292 1.20982 0.97101 0.98851 0.97830 1.20945 0.99445 0.93461 0.99587 1.20804 0.95256 0.96606 0.98964 1.23241 1.02910 1.00399 0.91751 1.22397 0.97727 1.02980 0.95561 0.85518 1.19231 0.83957 0.84320 0.78698 1.90746 1.72513 1.18742 1.58926 1.48427 1.22150 1.07719 1.55801 1.23271 1.02265 0.78443 1.00982 1.21202 0.92273 0.87628 0.92060 0.91798 1.42533 1.76037 1.06079 1.10769 1.19206 1.36343 0.87204 0.95134 0.91118 1.24744 1.01624 0.98262 0.95816 1.69645 1.49690 1.32341 1.06099 0.86276 0.77924 0.84076 0.77928 1.21198 1.21688 1.21192 1.22013 0.96434 0.94697 0.95614 1.21630 0.99343 1.01895 0.95969 1.21648 0.93739 1.02031 1.01245 1.22295 0.85177 0.98449 0.94320 0.91561 0.91733 0.91760 0.86790 0.86724 0.86854 0.86824 0.87006 0.87368 0.88115 0.91050 0.92445 0.77308 0.93300 0.90937 0.93372 0.92795 0.92865 0.93135 0.91356 0.91952 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.09 37.16 0.34 -0.72 16 2 C -0.06 -0.76 2.50 -155.66 -0.39 -1.15 16 3 C -0.01 -0.13 3.25 -104.62 -0.34 -0.47 16 4 C -0.11 -1.38 9.31 -39.59 -0.37 -1.75 16 5 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 6 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 7 C -0.12 -1.44 10.05 -39.59 -0.40 -1.84 16 8 C -0.10 -1.30 7.96 -39.58 -0.31 -1.61 16 9 C -0.15 -1.61 9.20 -26.73 -0.25 -1.86 16 10 C -0.17 -2.20 5.14 -91.77 -0.47 -2.67 16 11 H 0.13 1.64 8.03 -51.93 -0.42 1.22 16 12 C 0.55 8.82 7.55 -10.99 -0.08 8.74 16 13 O -0.53 -9.63 13.40 5.55 0.07 -9.56 16 14 N -0.61 -9.70 3.31 -170.38 -0.56 -10.26 16 15 C 0.08 1.30 5.86 -3.06 -0.02 1.28 16 16 C 0.18 3.32 2.85 -66.09 -0.19 3.13 16 17 H 0.06 1.20 8.02 -51.93 -0.42 0.78 16 18 N -0.71 -16.33 5.08 -51.65 -0.26 -16.59 16 19 C -0.25 -6.39 9.98 -15.06 -0.15 -6.54 16 20 H 0.07 1.77 7.83 -52.49 -0.41 1.35 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -26.67 13.06 55.49 0.72 -25.95 16 23 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.09 -1.36 0.87 -152.24 -0.13 -1.49 16 28 C -0.13 -2.15 7.94 37.16 0.30 -1.85 16 29 C -0.13 -1.84 8.68 37.16 0.32 -1.52 16 30 C 0.12 1.84 5.85 -2.41 -0.01 1.82 16 31 H 0.07 0.57 8.08 -51.92 -0.42 0.15 16 32 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.11 1.31 7.70 -52.48 -0.40 0.90 16 35 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.11 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.11 1.37 5.99 -52.49 -0.31 1.06 16 39 H 0.11 0.99 8.05 -51.93 -0.42 0.58 16 40 H 0.10 1.13 6.14 -51.93 -0.32 0.81 16 41 H 0.07 1.32 8.01 -51.93 -0.42 0.91 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.39 9.50 5.26 -40.82 -0.21 9.28 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.07 1.33 6.34 -51.93 -0.33 1.00 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.05 0.93 7.91 -51.93 -0.41 0.52 16 48 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 52 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 LS Contribution 409.85 15.07 6.18 6.18 Total: -1.00 -29.89 409.85 -10.59 -40.48 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -8.66 Total: 11.94 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -3.05 Total: -12.58 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.10 Total: -52.79 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.89 -10.59 -40.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996073026.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.680 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds