Wall clock time and date at job start Wed Apr 1 2020 02:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.78164 * 2 1 4 4 C 1.54324 * 110.72315 * 123.23865 * 2 1 3 5 5 N 1.47026 * 107.26896 * 140.55299 * 4 2 1 6 6 C 1.34777 * 125.64518 * 181.02412 * 5 4 2 7 7 O 1.21276 * 120.00399 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99688 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.46990 * 179.97438 * 8 6 5 10 10 C 1.38263 * 119.99609 * 90.00431 * 9 8 6 11 11 C 1.38207 * 119.99549 * 179.97438 * 10 9 8 12 12 C 1.38250 * 120.00496 * 0.02562 * 11 10 9 13 13 C 1.38213 * 120.00114 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00260 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49604 * 299.99782 * 14 13 12 16 16 C 1.52997 * 117.49669 * 8.62223 * 14 13 12 17 17 C 1.38209 * 120.00049 * 270.27763 * 9 8 6 18 18 C 1.47426 * 108.70278 * 1.28994 * 5 4 2 19 19 C 1.55127 * 104.72485 * 335.55000 * 18 5 4 20 20 H 1.08999 * 111.19685 * 279.19530 * 19 18 5 21 21 N 1.46503 * 110.90598 * 155.27045 * 19 18 5 22 22 C 1.36934 * 119.99498 * 92.98062 * 21 19 18 23 23 H 1.08003 * 120.00134 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99984 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99813 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00138 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.46924 * 89.99780 * 26 24 22 28 28 H 1.48498 * 109.47183 * 210.00050 * 26 24 22 29 29 H 1.48501 * 109.47019 * 330.00299 * 26 24 22 30 30 H 1.09004 * 109.46748 * 298.20992 * 1 2 3 31 31 H 1.08997 * 109.47645 * 58.20971 * 1 2 3 32 32 H 1.09001 * 109.47234 * 178.21662 * 1 2 3 33 33 H 1.08996 * 109.47053 * 181.79021 * 3 2 1 34 34 H 1.08999 * 109.47089 * 301.79120 * 3 2 1 35 35 H 1.09001 * 109.46390 * 61.78804 * 3 2 1 36 36 H 1.08999 * 109.88072 * 21.14010 * 4 2 1 37 37 H 1.08994 * 110.01195 * 260.04460 * 4 2 1 38 38 H 1.09001 * 109.47182 * 59.99993 * 8 6 5 39 39 H 1.09000 * 109.47355 * 300.00427 * 8 6 5 40 40 H 1.07995 * 119.99746 * 359.97438 * 10 9 8 41 41 H 1.08004 * 119.99557 * 179.97438 * 11 10 9 42 42 H 1.08000 * 120.00145 * 179.97438 * 12 11 10 43 43 H 1.09002 * 115.56044 * 154.30603 * 14 13 12 44 44 H 1.08990 * 117.49990 * 359.97438 * 15 14 13 45 45 H 1.09004 * 117.49237 * 214.97804 * 15 14 13 46 46 H 1.08999 * 117.49685 * 145.02383 * 16 14 13 47 47 H 1.08997 * 117.50044 * 359.97438 * 16 14 13 48 48 H 1.07991 * 120.00337 * 0.02562 * 17 9 8 49 49 H 1.09002 * 110.36402 * 94.48011 * 18 5 4 50 50 H 1.09002 * 110.36542 * 216.80080 * 18 5 4 51 51 H 0.96992 * 120.00430 * 272.97612 * 21 19 18 52 52 H 0.97004 * 120.00040 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 3.2445 -1.5507 0.7389 6 6 3.9923 -2.3836 1.4896 7 8 3.7193 -2.5565 2.6585 8 6 5.1678 -3.1001 0.8764 9 6 5.8305 -3.9623 1.9197 10 6 5.4208 -5.2709 2.0970 11 6 6.0290 -6.0617 3.0535 12 6 7.0465 -5.5443 3.8333 13 6 7.4553 -4.2359 3.6569 14 6 8.5641 -3.6716 4.5074 15 6 8.3503 -3.6481 6.0222 16 6 9.3323 -4.6451 5.4035 17 6 6.8439 -3.4432 2.7032 18 6 3.4665 -1.2455 -0.6863 19 6 2.0789 -0.7954 -1.2139 20 1 1.4450 -1.6535 -1.4376 21 7 2.2213 0.0698 -2.3876 22 6 2.1865 -0.4712 -3.6451 23 1 2.0545 -1.5356 -3.7716 24 6 2.3210 0.3486 -4.7572 25 7 2.4814 1.6458 -4.6030 26 14 2.2742 -0.3894 -6.4727 27 1 0.8735 -0.4087 -6.9651 28 1 3.1092 0.4303 -7.3871 29 1 2.8029 -1.7764 -6.4294 30 1 -0.3633 0.4858 0.9057 31 1 -0.3634 0.5414 -0.8734 32 1 -0.3634 -1.0272 -0.0320 33 1 3.1620 1.4057 -0.0321 34 1 1.6956 1.9623 -0.8735 35 1 1.7475 1.9425 0.9056 36 1 1.3130 -1.4758 1.5775 37 1 2.3736 -0.1044 1.9995 38 1 5.8839 -2.3688 0.5016 39 1 4.8229 -3.7257 0.0531 40 1 4.6257 -5.6749 1.4881 41 1 5.7087 -7.0838 3.1922 42 1 7.5214 -6.1622 4.5810 43 1 9.1229 -2.8469 4.0651 44 1 7.4077 -4.0404 6.4035 45 1 8.7685 -2.8078 6.5764 46 1 10.3964 -4.4608 5.5508 47 1 9.0355 -5.6936 5.3782 48 1 7.1606 -2.4197 2.5680 49 1 4.1946 -0.4414 -0.7930 50 1 3.8031 -2.1361 -1.2170 51 1 2.3402 1.0256 -2.2739 52 1 2.5757 2.2186 -5.3801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996080981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:09 Heat of formation + Delta-G solvation = 22.004981 kcal Electronic energy + Delta-G solvation = -29618.008627 eV Core-core repulsion = 25775.998017 eV Total energy + Delta-G solvation = -3842.010610 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.30501 -39.60701 -38.02912 -36.85945 -34.14701 -33.27849 -32.52951 -30.87851 -30.83783 -28.19474 -27.52115 -27.02244 -25.61784 -23.97296 -23.86573 -22.80157 -22.14831 -21.51760 -20.10553 -18.87611 -18.53267 -17.36784 -17.05909 -16.71849 -16.16559 -15.75887 -15.35094 -15.05159 -14.65490 -14.47854 -14.17042 -13.97245 -13.82183 -13.71378 -13.20805 -12.97434 -12.91233 -12.86264 -12.55045 -12.35567 -12.14351 -11.96816 -11.84600 -11.82430 -11.55093 -11.31000 -11.28157 -11.06816 -11.05778 -10.93885 -10.83103 -10.61213 -10.54784 -10.49233 -10.24956 -9.91987 -9.77472 -9.64237 -9.04151 -8.79954 -8.56083 -8.32458 -7.11545 -5.89190 -3.19393 1.24837 1.34396 2.84727 3.19382 3.36531 3.42421 3.43725 3.49230 3.91504 4.30880 4.48375 4.57923 4.67571 4.71592 4.75441 4.82929 4.92607 5.01015 5.05552 5.10493 5.16703 5.25627 5.31018 5.38432 5.47394 5.51965 5.52423 5.59567 5.62359 5.67647 5.78232 5.79145 5.81915 5.87168 5.95876 5.99144 6.01086 6.01696 6.13029 6.19035 6.31262 6.33322 6.39442 6.42411 6.50586 6.55598 6.57216 6.65285 6.70765 6.86807 6.94475 7.59801 7.80921 8.28790 8.39452 9.41293 9.95221 10.30495 11.32811 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.002327 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.353109 B =12032.182021 C =12859.803666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.134 4.134 4 C 0.121 3.879 5 N -0.613 5.613 6 C 0.528 3.472 7 O -0.546 6.546 8 C -0.100 4.100 9 C -0.055 4.055 10 C -0.109 4.109 11 C -0.116 4.116 12 C -0.125 4.125 13 C -0.053 4.053 14 C -0.116 4.116 15 C -0.170 4.170 16 C -0.178 4.178 17 C -0.098 4.098 18 C 0.071 3.929 19 C 0.181 3.819 20 H 0.069 0.931 21 N -0.709 5.709 22 C -0.248 4.248 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.907 3.093 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.048 0.952 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.119 0.881 49 H 0.070 0.930 50 H 0.069 0.931 51 H 0.390 0.610 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.299 -10.288 16.782 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.001 4.001 5 N -0.347 5.347 6 C 0.316 3.684 7 O -0.424 6.424 8 C -0.140 4.140 9 C -0.055 4.055 10 C -0.127 4.127 11 C -0.134 4.134 12 C -0.143 4.143 13 C -0.053 4.053 14 C -0.134 4.134 15 C -0.206 4.206 16 C -0.215 4.215 17 C -0.116 4.116 18 C -0.055 4.055 19 C 0.068 3.932 20 H 0.086 0.914 21 N -0.351 5.351 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.130 0.870 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.137 0.863 49 H 0.088 0.912 50 H 0.088 0.912 51 H 0.227 0.773 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.182 -10.494 17.249 21.785 hybrid contribution 0.087 0.019 -1.075 1.079 sum 8.270 -10.475 16.174 20.969 Atomic orbital electron populations 1.21681 0.93455 1.01660 1.01811 1.21880 0.96052 0.95997 0.94999 1.21715 1.00955 0.94708 1.01747 1.22009 0.87399 0.94178 0.96559 1.48517 1.29764 1.43888 1.12516 1.20108 0.83326 0.78987 0.85980 1.90691 1.71048 1.64278 1.16373 1.20662 0.96302 0.99196 0.97828 1.19293 0.95663 0.93940 0.96600 1.20982 0.99383 0.93680 0.98633 1.21024 0.96552 0.99694 0.96117 1.20955 0.98054 0.95103 1.00172 1.19030 0.96249 0.93770 0.96262 1.21025 0.98836 1.01877 0.91670 1.23023 1.01284 1.01954 0.94388 1.23060 0.97746 0.96628 1.04056 1.20747 0.96267 0.99166 0.95392 1.23581 1.02632 1.00655 0.78663 1.21383 0.91721 0.93435 0.86633 0.91351 1.42446 1.86076 1.06566 0.99975 1.19253 1.42764 0.92682 0.83200 0.91039 1.24750 1.02307 0.95436 0.97948 1.69650 1.55969 1.02715 1.29342 0.86197 0.77492 0.78041 0.84464 1.21640 1.21740 1.20684 0.93223 0.91384 0.92879 0.92630 0.90933 0.93297 0.91855 0.92018 0.87968 0.87871 0.86219 0.86141 0.86288 0.86999 0.88537 0.88495 0.88518 0.88404 0.86267 0.91198 0.91229 0.77340 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.49 37.16 0.32 -1.53 16 2 C -0.09 -1.36 0.85 -152.67 -0.13 -1.49 16 3 C -0.13 -2.08 7.55 37.16 0.28 -1.80 16 4 C 0.12 1.85 6.04 -3.06 -0.02 1.83 16 5 N -0.61 -9.56 3.32 -170.38 -0.57 -10.13 16 6 C 0.53 8.35 7.84 -10.98 -0.09 8.26 16 7 O -0.55 -10.34 16.36 5.56 0.09 -10.25 16 8 C -0.10 -1.27 4.83 -29.03 -0.14 -1.41 16 9 C -0.05 -0.71 4.37 -104.62 -0.46 -1.16 16 10 C -0.11 -1.33 9.70 -39.58 -0.38 -1.71 16 11 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 12 C -0.12 -1.34 9.30 -39.59 -0.37 -1.71 16 13 C -0.05 -0.61 5.61 -104.62 -0.59 -1.19 16 14 C -0.12 -1.08 6.04 -91.77 -0.55 -1.64 16 15 C -0.17 -1.41 10.16 -26.73 -0.27 -1.68 16 16 C -0.18 -1.34 9.86 -26.73 -0.26 -1.60 16 17 C -0.10 -1.22 9.39 -39.58 -0.37 -1.60 16 18 C 0.07 1.15 6.07 -2.41 -0.01 1.13 16 19 C 0.18 3.27 2.97 -65.66 -0.19 3.08 16 20 H 0.07 1.28 7.99 -51.93 -0.41 0.86 16 21 N -0.71 -15.98 5.15 -51.23 -0.26 -16.24 16 22 C -0.25 -6.32 9.96 -15.06 -0.15 -6.47 16 23 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 25 N -0.93 -26.37 13.06 55.49 0.72 -25.65 16 26 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 33 H 0.05 0.89 7.42 -51.93 -0.39 0.50 16 34 H 0.07 1.26 6.75 -51.93 -0.35 0.91 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.95 7.82 -51.93 -0.41 0.55 16 37 H 0.06 0.93 7.85 -51.93 -0.41 0.53 16 38 H 0.10 1.16 8.09 -51.93 -0.42 0.74 16 39 H 0.10 1.16 7.80 -51.93 -0.40 0.76 16 40 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.12 1.03 6.02 -52.49 -0.32 0.71 16 43 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.10 0.69 6.18 -51.93 -0.32 0.37 16 48 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 49 H 0.07 1.20 7.69 -51.93 -0.40 0.80 16 50 H 0.07 1.08 7.48 -51.93 -0.39 0.69 16 51 H 0.39 9.30 5.45 -40.82 -0.22 9.08 16 52 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 415.32 15.07 6.26 6.26 Total: -1.00 -30.19 415.32 -11.30 -41.49 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.63 Total: 10.96 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -3.89 Total: -12.65 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: -0.11 Total: -52.02 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -30.19 -11.30 -41.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996080981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.495 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds