Wall clock time and date at job start Wed Apr 1 2020 02:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 110.78164 * 2 1 4 4 C 1.54324 * 110.72315 * 123.23865 * 2 1 3 5 5 N 1.47026 * 107.26896 * 140.55299 * 4 2 1 6 6 C 1.34777 * 125.64518 * 181.02412 * 5 4 2 7 7 O 1.21276 * 120.00399 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99688 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.46990 * 179.97438 * 8 6 5 10 10 C 1.38263 * 119.99609 * 90.00431 * 9 8 6 11 11 C 1.38207 * 119.99549 * 179.97438 * 10 9 8 12 12 C 1.38250 * 120.00496 * 0.02562 * 11 10 9 13 13 C 1.38213 * 120.00114 * 0.02562 * 12 11 10 14 14 C 1.50702 * 120.00260 * 179.97438 * 13 12 11 15 15 C 1.53000 * 117.49604 * 299.99782 * 14 13 12 16 16 C 1.52997 * 117.49669 * 8.62223 * 14 13 12 17 17 C 1.38209 * 120.00049 * 270.27763 * 9 8 6 18 18 C 1.47426 * 108.70278 * 1.28994 * 5 4 2 19 19 C 1.55127 * 104.72485 * 335.55000 * 18 5 4 20 20 H 1.08999 * 111.19685 * 279.19530 * 19 18 5 21 21 N 1.46503 * 110.90598 * 155.27045 * 19 18 5 22 22 C 1.36934 * 119.99498 * 92.98062 * 21 19 18 23 23 H 1.08003 * 120.00134 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99984 * 179.97438 * 22 21 19 25 25 N 1.31615 * 119.99813 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00138 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.46924 * 89.99780 * 26 24 22 28 28 H 1.48498 * 109.47183 * 210.00050 * 26 24 22 29 29 H 1.48501 * 109.47019 * 330.00299 * 26 24 22 30 30 H 1.09004 * 109.46748 * 298.20992 * 1 2 3 31 31 H 1.08997 * 109.47645 * 58.20971 * 1 2 3 32 32 H 1.09001 * 109.47234 * 178.21662 * 1 2 3 33 33 H 1.08996 * 109.47053 * 181.79021 * 3 2 1 34 34 H 1.08999 * 109.47089 * 301.79120 * 3 2 1 35 35 H 1.09001 * 109.46390 * 61.78804 * 3 2 1 36 36 H 1.08999 * 109.88072 * 21.14010 * 4 2 1 37 37 H 1.08994 * 110.01195 * 260.04460 * 4 2 1 38 38 H 1.09001 * 109.47182 * 59.99993 * 8 6 5 39 39 H 1.09000 * 109.47355 * 300.00427 * 8 6 5 40 40 H 1.07995 * 119.99746 * 359.97438 * 10 9 8 41 41 H 1.08004 * 119.99557 * 179.97438 * 11 10 9 42 42 H 1.08000 * 120.00145 * 179.97438 * 12 11 10 43 43 H 1.09002 * 115.56044 * 154.30603 * 14 13 12 44 44 H 1.08990 * 117.49990 * 359.97438 * 15 14 13 45 45 H 1.09004 * 117.49237 * 214.97804 * 15 14 13 46 46 H 1.08999 * 117.49685 * 145.02383 * 16 14 13 47 47 H 1.08997 * 117.50044 * 359.97438 * 16 14 13 48 48 H 1.07991 * 120.00337 * 0.02562 * 17 9 8 49 49 H 1.09002 * 110.36402 * 94.48011 * 18 5 4 50 50 H 1.09002 * 110.36542 * 216.80080 * 18 5 4 51 51 H 0.96992 * 120.00430 * 272.97612 * 21 19 18 52 52 H 0.97004 * 120.00040 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0760 -0.7912 1.2072 5 7 3.2445 -1.5507 0.7389 6 6 3.9923 -2.3836 1.4896 7 8 3.7193 -2.5565 2.6585 8 6 5.1678 -3.1001 0.8764 9 6 5.8305 -3.9623 1.9197 10 6 5.4208 -5.2709 2.0970 11 6 6.0290 -6.0617 3.0535 12 6 7.0465 -5.5443 3.8333 13 6 7.4553 -4.2359 3.6569 14 6 8.5641 -3.6716 4.5074 15 6 8.3503 -3.6481 6.0222 16 6 9.3323 -4.6451 5.4035 17 6 6.8439 -3.4432 2.7032 18 6 3.4665 -1.2455 -0.6863 19 6 2.0789 -0.7954 -1.2139 20 1 1.4450 -1.6535 -1.4376 21 7 2.2213 0.0698 -2.3876 22 6 2.1865 -0.4712 -3.6451 23 1 2.0545 -1.5356 -3.7716 24 6 2.3210 0.3486 -4.7572 25 7 2.4814 1.6458 -4.6030 26 14 2.2742 -0.3894 -6.4727 27 1 0.8735 -0.4087 -6.9651 28 1 3.1092 0.4303 -7.3871 29 1 2.8029 -1.7764 -6.4294 30 1 -0.3633 0.4858 0.9057 31 1 -0.3634 0.5414 -0.8734 32 1 -0.3634 -1.0272 -0.0320 33 1 3.1620 1.4057 -0.0321 34 1 1.6956 1.9623 -0.8735 35 1 1.7475 1.9425 0.9056 36 1 1.3130 -1.4758 1.5775 37 1 2.3736 -0.1044 1.9995 38 1 5.8839 -2.3688 0.5016 39 1 4.8229 -3.7257 0.0531 40 1 4.6257 -5.6749 1.4881 41 1 5.7087 -7.0838 3.1922 42 1 7.5214 -6.1622 4.5810 43 1 9.1229 -2.8469 4.0651 44 1 7.4077 -4.0404 6.4035 45 1 8.7685 -2.8078 6.5764 46 1 10.3964 -4.4608 5.5508 47 1 9.0355 -5.6936 5.3782 48 1 7.1606 -2.4197 2.5680 49 1 4.1946 -0.4414 -0.7930 50 1 3.8031 -2.1361 -1.2170 51 1 2.3402 1.0256 -2.2739 52 1 2.5757 2.2186 -5.3801 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996080981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:07 Heat of formation + Delta-G solvation = 8.098539 kcal Electronic energy + Delta-G solvation = -29618.611656 eV Core-core repulsion = 25775.998017 eV Total energy + Delta-G solvation = -3842.613638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.48664 -40.58674 -39.28094 -37.64772 -35.85077 -34.66575 -33.51623 -32.62784 -31.69948 -29.29716 -29.03240 -28.28087 -26.76283 -25.77645 -24.67716 -23.52482 -23.07727 -22.80334 -21.04507 -20.15312 -19.78609 -19.18356 -18.02673 -17.83925 -17.27997 -16.80199 -16.58596 -16.33893 -15.92827 -15.62546 -15.45874 -15.18922 -14.96633 -14.85543 -14.41434 -14.39384 -14.18014 -14.03551 -13.62654 -13.40423 -13.28665 -13.13661 -12.98467 -12.93558 -12.82900 -12.74231 -12.57915 -12.48060 -12.11039 -12.06503 -12.01827 -11.87090 -11.83434 -11.56892 -11.53436 -11.31612 -11.25418 -10.99673 -10.85839 -9.69565 -9.66592 -9.39831 -8.99381 -7.91820 -5.20245 0.37327 0.46987 1.51545 1.52240 1.59778 1.60050 1.99730 2.58653 2.68881 3.14124 3.38517 3.43878 3.56077 3.72651 3.77676 3.87811 3.92746 3.98096 3.99929 4.13478 4.16034 4.16963 4.20855 4.31690 4.37032 4.42099 4.45148 4.49017 4.58765 4.67699 4.74777 4.78933 4.79613 4.84120 4.86915 4.95781 5.02068 5.06121 5.09128 5.12687 5.17318 5.18539 5.20164 5.24417 5.33248 5.43007 5.50171 5.55611 5.57947 5.65329 5.69007 6.10038 6.29699 6.52589 7.13039 7.38407 8.10750 8.35698 9.31037 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.002327 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.353109 B =12032.182021 C =12859.803666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C -0.128 4.128 4 C 0.124 3.876 5 N -0.612 5.612 6 C 0.528 3.472 7 O -0.577 6.577 8 C -0.095 4.095 9 C -0.071 4.071 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.130 4.130 13 C -0.060 4.060 14 C -0.135 4.135 15 C -0.172 4.172 16 C -0.163 4.163 17 C -0.118 4.118 18 C 0.084 3.916 19 C 0.173 3.827 20 H 0.065 0.935 21 N -0.719 5.719 22 C -0.239 4.239 23 H 0.078 0.922 24 C -0.069 4.069 25 N -0.966 5.966 26 Si 0.966 3.034 27 H -0.291 1.291 28 H -0.300 1.300 29 H -0.269 1.269 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.140 0.860 43 H 0.115 0.885 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.112 0.888 47 H 0.104 0.896 48 H 0.119 0.881 49 H 0.062 0.938 50 H 0.080 0.920 51 H 0.382 0.618 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.907 -12.053 18.017 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.185 4.185 4 C 0.001 3.999 5 N -0.345 5.345 6 C 0.318 3.682 7 O -0.458 6.458 8 C -0.134 4.134 9 C -0.072 4.072 10 C -0.144 4.144 11 C -0.137 4.137 12 C -0.148 4.148 13 C -0.060 4.060 14 C -0.153 4.153 15 C -0.209 4.209 16 C -0.200 4.200 17 C -0.136 4.136 18 C -0.042 4.042 19 C 0.062 3.938 20 H 0.083 0.917 21 N -0.359 5.359 22 C -0.370 4.370 23 H 0.096 0.904 24 C -0.261 4.261 25 N -0.616 5.616 26 Si 0.796 3.204 27 H -0.219 1.219 28 H -0.227 1.227 29 H -0.193 1.193 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.133 0.867 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.130 0.870 47 H 0.122 0.878 48 H 0.137 0.863 49 H 0.080 0.920 50 H 0.098 0.902 51 H 0.217 0.783 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.788 -12.302 18.511 23.900 hybrid contribution -0.108 0.523 -1.329 1.432 sum 8.679 -11.779 17.182 22.567 Atomic orbital electron populations 1.21650 0.92366 1.02116 1.02092 1.21808 0.96892 0.95588 0.93741 1.21647 1.00305 0.94741 1.01842 1.22005 0.87440 0.94244 0.96235 1.48527 1.29928 1.43912 1.12107 1.20615 0.83609 0.78461 0.85526 1.90673 1.72008 1.65306 1.17787 1.20677 0.95209 0.99417 0.98093 1.19413 0.96194 0.94459 0.97114 1.21209 1.00005 0.93759 0.99449 1.21360 0.96218 1.00709 0.95447 1.21265 0.97967 0.95117 1.00439 1.19320 0.96532 0.94097 0.96050 1.21088 0.99128 1.03054 0.92035 1.23072 1.01429 1.02805 0.93547 1.23162 0.98378 0.96539 1.01896 1.20920 0.96886 0.99572 0.96236 1.23261 1.00982 1.00807 0.79103 1.21540 0.92820 0.93147 0.86290 0.91691 1.42537 1.86240 1.06677 1.00464 1.19616 1.40148 0.92931 0.84346 0.90373 1.25447 1.03621 0.95846 1.01220 1.69793 1.58356 1.03855 1.29596 0.85252 0.76967 0.77678 0.80514 1.21850 1.22679 1.19346 0.90910 0.93267 0.92203 0.93473 0.93150 0.90925 0.91333 0.91654 0.86847 0.86368 0.85467 0.83820 0.84189 0.86703 0.89328 0.87399 0.86958 0.87767 0.86250 0.91971 0.90178 0.78303 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.41 8.49 71.98 0.61 -2.80 16 2 C -0.08 -2.36 0.85 -50.99 -0.04 -2.41 16 3 C -0.13 -3.91 7.55 71.98 0.54 -3.37 16 4 C 0.12 3.57 6.04 86.73 0.52 4.10 16 5 N -0.61 -18.36 3.32 -811.35 -2.70 -21.05 16 6 C 0.53 16.21 7.84 87.66 0.69 16.89 16 7 O -0.58 -21.52 16.36 -3.02 -0.05 -21.57 16 8 C -0.09 -2.30 4.83 29.10 0.14 -2.16 16 9 C -0.07 -1.81 4.37 -19.87 -0.09 -1.89 16 10 C -0.13 -2.95 9.70 22.27 0.22 -2.74 16 11 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 12 C -0.13 -2.58 9.30 22.27 0.21 -2.38 16 13 C -0.06 -1.32 5.61 -19.86 -0.11 -1.43 16 14 C -0.14 -2.36 6.04 -11.54 -0.07 -2.43 16 15 C -0.17 -2.59 10.16 30.60 0.31 -2.28 16 16 C -0.16 -2.08 9.86 30.60 0.30 -1.78 16 17 C -0.12 -2.92 9.39 22.27 0.21 -2.71 16 18 C 0.08 2.66 6.07 86.93 0.53 3.18 16 19 C 0.17 6.14 2.97 46.46 0.14 6.28 16 20 H 0.07 2.36 7.99 -2.39 -0.02 2.35 16 21 N -0.72 -32.46 5.15 -316.00 -1.63 -34.08 16 22 C -0.24 -12.11 9.96 84.03 0.84 -11.27 16 23 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 25 N -0.97 -55.87 13.06 21.65 0.28 -55.59 16 26 Si 0.97 43.84 29.55 68.60 2.03 45.86 16 27 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 28 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 29 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 30 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 33 H 0.05 1.50 7.42 -2.39 -0.02 1.48 16 34 H 0.05 1.78 6.75 -2.39 -0.02 1.76 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.94 7.82 -2.39 -0.02 1.92 16 37 H 0.07 1.87 7.85 -2.39 -0.02 1.85 16 38 H 0.11 2.47 8.09 -2.39 -0.02 2.45 16 39 H 0.12 2.48 7.80 -2.39 -0.02 2.46 16 40 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 41 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 42 H 0.14 2.08 6.02 -2.91 -0.02 2.06 16 43 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.10 1.19 6.18 -2.39 -0.01 1.17 16 48 H 0.12 2.79 8.06 -2.92 -0.02 2.77 16 49 H 0.06 2.09 7.69 -2.39 -0.02 2.07 16 50 H 0.08 2.36 7.48 -2.39 -0.02 2.34 16 51 H 0.38 18.55 5.45 -92.71 -0.51 18.05 16 52 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -64.59 415.32 3.97 -60.62 By element: Atomic # 1 Polarization: 40.03 SS G_CDS: 0.40 Total: 40.43 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: 5.63 Total: -14.61 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -4.04 Total: -110.72 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -64.59 3.97 -60.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996080981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.719 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds