Wall clock time and date at job start Wed Apr 1 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 110.64038 * 2 1 4 4 C 1.54324 * 110.72031 * 123.13794 * 2 1 3 5 5 N 1.47025 * 107.26911 * 140.56006 * 4 2 1 6 6 C 1.34777 * 125.64642 * 181.02142 * 5 4 2 7 7 O 1.21279 * 119.99941 * 5.05258 * 6 5 4 8 8 C 1.50700 * 119.99989 * 185.04734 * 6 5 4 9 9 H 1.09006 * 109.71081 * 25.59240 * 8 6 5 10 10 C 1.53324 * 109.68202 * 146.12643 * 8 6 5 11 11 C 1.52734 * 108.40120 * 189.57561 * 10 8 6 12 12 C 1.50630 * 110.59788 * 308.92906 * 11 10 8 13 13 C 1.38914 * 117.75663 * 197.42766 * 12 11 10 14 14 C 1.37930 * 120.54003 * 180.64918 * 13 12 11 15 15 C 1.38260 * 119.77922 * 359.96879 * 14 13 12 16 16 C 1.37938 * 119.76821 * 359.87033 * 15 14 13 17 17 C 1.37662 * 122.55837 * 17.81017 * 12 11 10 18 18 C 1.50626 * 122.56752 * 359.14624 * 17 12 11 19 19 C 1.47421 * 108.70598 * 1.28392 * 5 4 2 20 20 C 1.55127 * 104.72017 * 335.55885 * 19 5 4 21 21 H 1.09000 * 110.90693 * 155.27457 * 20 19 5 22 22 N 1.46504 * 111.18971 * 279.18883 * 20 19 5 23 23 C 1.36935 * 119.99670 * 267.18665 * 22 20 19 24 24 H 1.08003 * 120.00721 * 0.02562 * 23 22 20 25 25 C 1.38819 * 119.99887 * 180.02562 * 23 22 20 26 26 N 1.31616 * 119.99726 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00161 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47545 * 89.99858 * 27 25 23 29 29 H 1.48500 * 109.47075 * 209.99733 * 27 25 23 30 30 H 1.48498 * 109.46774 * 329.99533 * 27 25 23 31 31 H 1.08999 * 109.47428 * 298.31407 * 1 2 3 32 32 H 1.08999 * 109.47326 * 58.31670 * 1 2 3 33 33 H 1.09004 * 109.47054 * 178.31998 * 1 2 3 34 34 H 1.08997 * 109.47090 * 181.69309 * 3 2 1 35 35 H 1.09008 * 109.46821 * 301.68438 * 3 2 1 36 36 H 1.08991 * 109.47667 * 61.68571 * 3 2 1 37 37 H 1.08992 * 109.88450 * 21.13937 * 4 2 1 38 38 H 1.09001 * 110.01130 * 260.04427 * 4 2 1 39 39 H 1.09001 * 109.67817 * 309.30233 * 10 8 6 40 40 H 1.09004 * 109.67985 * 69.80634 * 10 8 6 41 41 H 1.08998 * 109.25144 * 188.64421 * 11 10 8 42 42 H 1.08996 * 109.25376 * 69.21736 * 11 10 8 43 43 H 1.07997 * 119.72531 * 0.63094 * 13 12 11 44 44 H 1.08005 * 120.10970 * 179.97438 * 14 13 12 45 45 H 1.07997 * 120.11819 * 179.60029 * 15 14 13 46 46 H 1.08001 * 119.72639 * 180.02562 * 16 15 14 47 47 H 1.09006 * 109.25767 * 138.19493 * 18 17 12 48 48 H 1.09001 * 109.26113 * 257.67095 * 18 17 12 49 49 H 1.09004 * 110.36633 * 94.48441 * 19 5 4 50 50 H 1.08991 * 110.37049 * 216.80817 * 19 5 4 51 51 H 0.97002 * 119.99937 * 87.18901 * 22 20 19 52 52 H 0.97000 * 120.00221 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0759 -0.7891 1.2087 5 7 3.2445 -1.5493 0.7417 6 6 3.9923 -2.3808 1.4939 7 8 3.6667 -2.6226 2.6369 8 6 5.2331 -3.0102 0.9148 9 1 5.6234 -2.3832 0.1130 10 6 6.2933 -3.1656 2.0114 11 6 7.6093 -3.5777 1.3547 12 6 7.4007 -4.7616 0.4471 13 6 8.5207 -5.4893 0.0652 14 6 8.3974 -6.5760 -0.7752 15 6 7.1493 -6.9453 -1.2415 16 6 6.0356 -6.2260 -0.8608 17 6 6.1574 -5.1324 -0.0131 18 6 4.8994 -4.3966 0.3676 19 6 3.4666 -1.2467 -0.6839 20 6 2.0790 -0.7975 -1.2123 21 1 2.1849 -0.1554 -2.0867 22 7 1.2271 -1.9515 -1.5110 23 6 1.2022 -2.4748 -2.7761 24 1 1.8107 -2.0373 -3.5537 25 6 0.3946 -3.5679 -3.0593 26 7 -0.3474 -4.1008 -2.1118 27 14 0.3611 -4.2823 -4.7849 28 1 1.4020 -5.3345 -4.9055 29 1 -0.9746 -4.8749 -5.0494 30 1 0.6290 -3.2054 -5.7717 31 1 -0.3634 0.4874 0.9047 32 1 -0.3634 0.5397 -0.8745 33 1 -0.3633 -1.0273 -0.0301 34 1 3.1586 1.4097 -0.0304 35 1 1.6922 1.9621 -0.8746 36 1 1.7413 1.9437 0.9046 37 1 1.3129 -1.4730 1.5802 38 1 2.3735 -0.1008 1.9998 39 1 6.4243 -2.2172 2.5324 40 1 5.9796 -3.9329 2.7192 41 1 8.3302 -3.8410 2.1287 42 1 7.9974 -2.7423 0.7722 43 1 9.4959 -5.2016 0.4292 44 1 9.2729 -7.1366 -1.0680 45 1 7.0472 -7.7914 -1.9050 46 1 5.0609 -6.5154 -1.2251 47 1 4.2637 -4.2924 -0.5118 48 1 4.3672 -4.9650 1.1304 49 1 4.1947 -0.4428 -0.7921 50 1 3.8031 -2.1381 -1.2130 51 1 0.6808 -2.3447 -0.8125 52 1 -0.9114 -4.8648 -2.3095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996348793.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:35 Heat of formation + Delta-G solvation = -15.087319 kcal Electronic energy + Delta-G solvation = -31139.015331 eV Core-core repulsion = 27295.396279 eV Total energy + Delta-G solvation = -3843.619053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.49520 -39.54983 -37.98639 -35.61025 -33.88619 -33.24868 -32.50608 -30.75446 -30.37067 -28.94240 -28.02386 -26.67105 -26.29082 -24.09935 -23.71280 -22.84228 -22.11329 -21.53023 -19.76931 -18.85773 -18.36950 -17.25140 -16.70178 -16.45278 -15.79214 -15.60960 -15.08950 -14.75285 -14.55726 -14.13529 -14.08074 -13.83064 -13.75943 -13.55662 -13.24223 -13.03119 -12.86730 -12.77260 -12.63056 -12.30472 -12.12641 -12.00779 -11.91149 -11.58171 -11.50079 -11.39347 -11.32136 -11.02348 -10.97841 -10.90355 -10.79261 -10.54136 -10.42316 -10.39070 -10.26037 -9.90286 -9.67350 -9.35176 -9.03060 -8.72089 -8.51231 -8.18847 -7.05283 -5.85238 -3.15141 1.38973 1.40655 2.96408 3.37258 3.38844 3.43281 3.44986 3.77566 4.49371 4.56250 4.62252 4.76917 4.89843 4.96475 5.03041 5.09011 5.10748 5.17571 5.22883 5.27407 5.39033 5.43524 5.48684 5.55473 5.59438 5.67144 5.70470 5.76619 5.79831 5.86569 5.91590 5.97747 5.98675 6.00210 6.06407 6.07489 6.17360 6.20317 6.24882 6.27609 6.31074 6.35503 6.41746 6.50663 6.55401 6.57032 6.67151 6.72413 6.80730 6.93733 7.05197 7.61822 7.96483 8.32115 8.54836 9.44241 9.99503 10.34375 11.36532 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008512 B = 0.004373 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.542849 B = 6400.776177 C = 8929.488376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 C -0.131 4.131 4 C 0.122 3.878 5 N -0.601 5.601 6 C 0.534 3.466 7 O -0.553 6.553 8 C -0.097 4.097 9 H 0.090 0.910 10 C -0.099 4.099 11 C -0.078 4.078 12 C -0.079 4.079 13 C -0.123 4.123 14 C -0.127 4.127 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.064 4.064 18 C -0.071 4.071 19 C 0.067 3.933 20 C 0.179 3.821 21 H 0.073 0.927 22 N -0.707 5.707 23 C -0.246 4.246 24 H 0.071 0.929 25 C -0.006 4.006 26 N -0.927 5.927 27 Si 0.904 3.096 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.281 1.281 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.125 0.875 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.055 0.945 50 H 0.079 0.921 51 H 0.387 0.613 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.922 3.932 4.800 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C -0.189 4.189 4 C -0.001 4.001 5 N -0.333 5.333 6 C 0.323 3.677 7 O -0.432 6.432 8 C -0.118 4.118 9 H 0.109 0.891 10 C -0.137 4.137 11 C -0.115 4.115 12 C -0.079 4.079 13 C -0.141 4.141 14 C -0.145 4.145 15 C -0.141 4.141 16 C -0.133 4.133 17 C -0.064 4.064 18 C -0.109 4.109 19 C -0.059 4.059 20 C 0.066 3.934 21 H 0.091 0.909 22 N -0.347 5.347 23 C -0.377 4.377 24 H 0.089 0.911 25 C -0.203 4.203 26 N -0.574 5.574 27 Si 0.735 3.265 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.143 0.857 47 H 0.108 0.892 48 H 0.102 0.898 49 H 0.073 0.927 50 H 0.097 0.903 51 H 0.223 0.777 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.758 3.689 5.253 16.094 hybrid contribution -0.181 -0.736 -0.897 1.174 sum 14.578 2.953 4.356 15.499 Atomic orbital electron populations 1.21637 0.92902 1.03322 1.00533 1.21928 0.96763 0.94795 0.95711 1.21755 1.00584 0.94926 1.01596 1.21964 0.87955 0.94103 0.96085 1.48353 1.29261 1.43836 1.11818 1.20126 0.84212 0.78082 0.85316 1.90653 1.72165 1.61664 1.18722 1.21208 0.93816 0.97511 0.99299 0.89148 1.21386 0.92995 1.02482 0.96813 1.20481 0.97948 0.95584 0.97504 1.19614 0.92524 0.97263 0.98502 1.21089 0.97904 0.96118 0.98988 1.21016 0.97380 0.97558 0.98523 1.21060 0.92734 0.99994 1.00283 1.21264 0.99210 0.95204 0.97589 1.19575 0.93998 0.95944 0.96905 1.20395 0.95008 0.93129 1.02341 1.23482 1.01248 1.00539 0.80611 1.21374 0.88323 0.89661 0.93996 0.90872 1.42364 1.49490 1.32559 1.10311 1.19216 1.21256 1.09874 0.87395 0.91060 1.24726 0.99352 0.98731 0.97478 1.69659 1.30538 1.25564 1.31683 0.86246 0.76953 0.79072 0.84220 1.21713 1.21786 1.20698 0.93801 0.92328 0.90961 0.92809 0.92284 0.92842 0.91596 0.92414 0.91226 0.90579 0.90553 0.90607 0.86426 0.86400 0.86204 0.85750 0.89188 0.89830 0.92710 0.90264 0.77735 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 8.15 37.15 0.30 -1.71 16 2 C -0.09 -1.38 0.80 -152.68 -0.12 -1.50 16 3 C -0.13 -1.60 8.44 37.16 0.31 -1.29 16 4 C 0.12 2.01 6.04 -3.06 -0.02 2.00 16 5 N -0.60 -10.22 3.32 -170.39 -0.57 -10.79 16 6 C 0.53 9.40 6.84 -10.99 -0.08 9.33 16 7 O -0.55 -11.40 16.78 5.56 0.09 -11.31 16 8 C -0.10 -1.40 1.96 -91.74 -0.18 -1.58 16 9 H 0.09 1.21 7.12 -51.93 -0.37 0.84 16 10 C -0.10 -1.25 4.80 -26.70 -0.13 -1.37 16 11 C -0.08 -0.83 5.67 -28.05 -0.16 -0.99 16 12 C -0.08 -0.98 5.74 -104.62 -0.60 -1.58 16 13 C -0.12 -1.36 9.61 -39.44 -0.38 -1.74 16 14 C -0.13 -1.39 10.05 -39.69 -0.40 -1.78 16 15 C -0.12 -1.47 10.05 -39.68 -0.40 -1.87 16 16 C -0.11 -1.57 9.61 -39.44 -0.38 -1.95 16 17 C -0.06 -0.90 5.74 -104.62 -0.60 -1.50 16 18 C -0.07 -1.09 4.97 -28.05 -0.14 -1.23 16 19 C 0.07 1.09 5.58 -2.41 -0.01 1.08 16 20 C 0.18 3.19 2.96 -65.66 -0.19 3.00 16 21 H 0.07 1.28 7.99 -51.93 -0.42 0.87 16 22 N -0.71 -16.13 4.57 -51.23 -0.23 -16.37 16 23 C -0.25 -6.30 9.96 -15.06 -0.15 -6.45 16 24 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 25 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 26 N -0.93 -26.79 13.06 55.49 0.72 -26.07 16 27 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 30 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.37 6.34 -51.93 -0.33 1.05 16 34 H 0.05 0.63 7.44 -51.93 -0.39 0.24 16 35 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.23 7.82 -51.93 -0.41 0.82 16 38 H 0.06 0.89 7.85 -51.93 -0.41 0.49 16 39 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 40 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 41 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.12 1.03 8.05 -52.49 -0.42 0.60 16 44 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.12 1.70 8.05 -52.49 -0.42 1.27 16 47 H 0.09 1.52 7.79 -51.93 -0.40 1.11 16 48 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 49 H 0.05 0.75 7.71 -51.93 -0.40 0.35 16 50 H 0.08 1.40 7.34 -51.93 -0.38 1.02 16 51 H 0.39 9.71 6.32 -40.82 -0.26 9.45 16 52 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 406.33 15.07 6.12 6.12 Total: -1.00 -30.10 406.33 -11.09 -41.20 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -8.79 Total: 12.17 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -3.42 Total: -11.39 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.08 Total: -53.22 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.10 -11.09 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996348793.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.110 kcal (2) G-P(sol) polarization free energy of solvation -30.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds