Wall clock time and date at job start Wed Apr 1 2020 02:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 110.91388 * 2 1 4 4 C 1.55128 * 111.19579 * 236.09213 * 2 1 3 5 5 N 1.47425 * 104.71676 * 279.19200 * 4 2 1 6 6 C 1.34777 * 125.64791 * 155.81752 * 5 4 2 7 7 O 1.21284 * 120.00217 * 184.72118 * 6 5 4 8 8 C 1.50700 * 120.00145 * 4.72983 * 6 5 4 9 9 H 1.09003 * 109.67238 * 333.04538 * 8 6 5 10 10 C 1.53320 * 109.68273 * 212.53588 * 8 6 5 11 11 C 1.52736 * 108.38813 * 170.36632 * 10 8 6 12 12 C 1.50624 * 110.59012 * 51.09934 * 11 10 8 13 13 C 1.38909 * 117.75560 * 162.27636 * 12 11 10 14 14 C 1.37935 * 120.54785 * 179.76198 * 13 12 11 15 15 C 1.38264 * 119.76680 * 359.96078 * 14 13 12 16 16 C 1.37933 * 119.77716 * 0.11596 * 15 14 13 17 17 C 1.37665 * 122.56271 * 342.22572 * 12 11 10 18 18 C 1.50713 * 122.57909 * 0.71372 * 17 12 11 19 19 C 1.47022 * 108.70494 * 335.54999 * 5 4 2 20 20 C 1.54324 * 107.27261 * 1.28857 * 19 5 4 21 21 H 1.08994 * 110.72010 * 140.73229 * 20 19 5 22 22 N 1.46502 * 110.72367 * 263.83267 * 20 19 5 23 23 C 1.36930 * 119.99839 * 273.54522 * 22 20 19 24 24 H 1.08001 * 119.99980 * 359.97438 * 23 22 20 25 25 C 1.38812 * 120.00156 * 179.97438 * 23 22 20 26 26 N 1.31615 * 119.99843 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 120.00310 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.46883 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47339 * 120.00090 * 27 25 23 30 30 H 1.48499 * 109.47108 * 240.00115 * 27 25 23 31 31 H 1.09000 * 109.47167 * 296.10059 * 1 2 3 32 32 H 1.09001 * 109.47262 * 56.09938 * 1 2 3 33 33 H 1.09002 * 109.47339 * 176.09829 * 1 2 3 34 34 H 1.08998 * 109.47194 * 183.90079 * 3 2 1 35 35 H 1.09003 * 109.46718 * 303.90004 * 3 2 1 36 36 H 1.08995 * 109.46807 * 63.90053 * 3 2 1 37 37 H 1.08996 * 110.49959 * 160.34918 * 4 2 1 38 38 H 1.09003 * 110.33893 * 37.94827 * 4 2 1 39 39 H 1.08996 * 109.68100 * 290.08918 * 10 8 6 40 40 H 1.09004 * 109.68458 * 50.60156 * 10 8 6 41 41 H 1.09004 * 109.24815 * 171.38563 * 11 10 8 42 42 H 1.09001 * 109.24993 * 290.84704 * 11 10 8 43 43 H 1.08002 * 119.72665 * 359.77911 * 13 12 11 44 44 H 1.07997 * 120.11750 * 179.97438 * 14 13 12 45 45 H 1.08004 * 120.11215 * 180.09623 * 15 14 13 46 46 H 1.07997 * 119.72953 * 180.02562 * 16 15 14 47 47 H 1.09001 * 109.30659 * 221.94975 * 18 17 12 48 48 H 1.09008 * 109.24008 * 102.49426 * 18 17 12 49 49 H 1.08998 * 109.88466 * 120.71054 * 19 5 4 50 50 H 1.09008 * 109.88473 * 241.71832 * 19 5 4 51 51 H 0.97005 * 119.99963 * 93.53960 * 22 20 19 52 52 H 0.97007 * 120.00388 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4293 0.0000 4 6 2.0909 -0.8069 -1.2004 5 7 2.0139 -2.2158 -0.7733 6 6 1.9472 -3.2828 -1.5940 7 8 1.8008 -4.3947 -1.1323 8 6 2.0546 -3.0943 -3.0853 9 1 1.7090 -2.0963 -3.3548 10 6 1.2011 -4.1474 -3.8017 11 6 1.1355 -3.7869 -5.2845 12 6 2.5181 -3.5533 -5.8345 13 6 2.6802 -3.5886 -7.2136 14 6 3.9203 -3.3775 -7.7794 15 6 5.0116 -3.1279 -6.9679 16 6 4.8531 -3.0941 -5.5981 17 6 3.6056 -3.3095 -5.0263 18 6 3.5071 -3.2713 -3.5229 19 6 2.0285 -2.2645 0.6961 20 6 2.0861 -0.8078 1.2023 21 1 1.4548 -0.6799 2.0815 22 7 3.4667 -0.4154 1.4963 23 6 4.0065 -0.6803 2.7265 24 1 3.4145 -1.1782 3.4802 25 6 5.3148 -0.3090 3.0049 26 7 6.0364 0.2973 2.0862 27 14 6.0511 -0.6697 4.6834 28 1 5.0409 -1.3533 5.5304 29 1 7.2394 -1.5459 4.5247 30 1 6.4579 0.6040 5.3295 31 1 -0.3633 0.4521 0.9229 32 1 -0.3634 0.5732 -0.8530 33 1 -0.3634 -1.0253 -0.0699 34 1 3.1636 1.4027 -0.0699 35 1 1.6704 1.9732 -0.8530 36 1 1.7835 1.9300 0.9228 37 1 3.1253 -0.5265 -1.3987 38 1 1.4764 -0.6448 -2.0860 39 1 1.6554 -5.1310 -3.6828 40 1 0.1959 -4.1540 -3.3801 41 1 0.6639 -4.6029 -5.8321 42 1 0.5422 -2.8809 -5.4082 43 1 1.8281 -3.7825 -7.8482 44 1 4.0385 -3.4068 -8.8525 45 1 5.9849 -2.9603 -7.4050 46 1 5.7060 -2.8987 -4.9650 47 1 4.1007 -2.4394 -3.1439 48 1 3.8946 -4.2044 -3.1137 49 1 1.1219 -2.7479 1.0600 50 1 2.9049 -2.8139 1.0401 51 1 3.9983 0.0320 0.8194 52 1 6.9508 0.5565 2.2806 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996348795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:39 Heat of formation + Delta-G solvation = -13.777408 kcal Electronic energy + Delta-G solvation = -30742.144414 eV Core-core repulsion = 26898.582163 eV Total energy + Delta-G solvation = -3843.562251 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.61004 -39.63786 -38.05266 -35.73573 -33.99962 -33.05016 -32.68630 -30.94658 -30.43267 -29.13958 -27.95437 -26.78017 -26.08002 -24.53113 -23.72258 -22.98189 -22.27699 -21.41262 -19.84517 -18.80587 -18.54459 -17.32146 -16.85325 -16.56349 -15.94247 -15.39553 -15.26523 -14.83071 -14.70709 -14.30687 -14.10281 -13.91022 -13.80180 -13.57021 -13.35540 -13.28178 -12.95700 -12.88098 -12.51498 -12.40311 -12.27771 -12.02573 -11.85399 -11.69200 -11.60379 -11.54465 -11.42996 -11.03395 -10.99486 -10.94582 -10.91145 -10.61487 -10.54367 -10.48300 -10.21137 -9.85404 -9.66558 -9.41019 -8.99489 -8.88036 -8.67116 -8.20747 -7.05642 -5.84194 -3.13355 1.23654 1.24540 2.88264 3.32468 3.40153 3.46896 3.48278 3.61805 4.43122 4.48485 4.52814 4.68569 4.73481 4.79800 4.86091 4.91921 5.02491 5.04990 5.13492 5.21111 5.25299 5.34391 5.40455 5.46634 5.51668 5.61450 5.62711 5.67123 5.72393 5.74694 5.80081 5.85667 5.86985 5.90769 5.91595 6.06889 6.08077 6.15035 6.18987 6.22714 6.29791 6.32980 6.36313 6.38925 6.39397 6.55146 6.59239 6.75200 6.82560 6.88288 6.89064 7.65988 7.91050 8.33996 8.48353 9.46305 10.00328 10.35384 11.38084 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.002972 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.908639 B = 9417.433264 C =10272.155776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.126 4.126 4 C 0.111 3.889 5 N -0.603 5.603 6 C 0.529 3.471 7 O -0.549 6.549 8 C -0.101 4.101 9 H 0.091 0.909 10 C -0.100 4.100 11 C -0.080 4.080 12 C -0.077 4.077 13 C -0.122 4.122 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.068 4.068 18 C -0.069 4.069 19 C 0.082 3.918 20 C 0.178 3.822 21 H 0.069 0.931 22 N -0.712 5.712 23 C -0.243 4.243 24 H 0.072 0.928 25 C -0.009 4.009 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.291 1.291 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.123 0.877 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.052 0.948 50 H 0.074 0.926 51 H 0.386 0.614 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -2.913 -18.576 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.183 4.183 4 C -0.012 4.012 5 N -0.335 5.335 6 C 0.317 3.683 7 O -0.427 6.427 8 C -0.122 4.122 9 H 0.109 0.891 10 C -0.137 4.137 11 C -0.116 4.116 12 C -0.077 4.077 13 C -0.140 4.140 14 C -0.143 4.143 15 C -0.141 4.141 16 C -0.135 4.135 17 C -0.068 4.068 18 C -0.106 4.106 19 C -0.043 4.043 20 C 0.066 3.934 21 H 0.087 0.913 22 N -0.353 5.353 23 C -0.374 4.374 24 H 0.090 0.910 25 C -0.205 4.205 26 N -0.578 5.578 27 Si 0.737 3.263 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.222 0.778 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.862 -3.604 -18.167 20.984 hybrid contribution 0.876 -0.022 0.622 1.075 sum -8.986 -3.626 -17.545 20.043 Atomic orbital electron populations 1.21684 0.93925 1.01533 1.01646 1.22030 0.95292 0.96003 0.95602 1.21587 1.02075 0.93574 1.01093 1.22468 1.00923 0.80707 0.97071 1.48463 1.71327 1.05979 1.07744 1.20121 0.76612 0.83547 0.88016 1.90672 1.50316 1.24035 1.77671 1.21268 0.97495 1.01590 0.91876 0.89094 1.21389 1.00050 0.98850 0.93460 1.20502 0.93301 1.01995 0.95851 1.19634 0.95102 0.99804 0.93149 1.21123 0.97488 1.01115 0.94231 1.21043 0.93020 1.00656 0.99605 1.21061 0.98807 1.00528 0.93681 1.21209 0.96911 1.00181 0.95188 1.19575 0.92965 0.99307 0.94931 1.20373 0.95129 1.03758 0.91389 1.23140 1.01138 1.01660 0.78406 1.21255 0.88595 0.89320 0.94235 0.91295 1.42442 1.08268 1.69900 1.14705 1.19270 0.95503 1.32071 0.90512 0.91011 1.24722 0.96797 1.01071 0.97943 1.69656 1.09428 1.45614 1.33118 0.86134 0.79059 0.77394 0.83693 1.20500 1.21871 1.21861 0.92239 0.92843 0.92766 0.91188 0.93652 0.92049 0.91030 0.91451 0.90543 0.91019 0.90438 0.90519 0.86303 0.86290 0.86150 0.85913 0.89877 0.89731 0.92935 0.90740 0.77832 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.59 37.16 0.32 -1.28 16 2 C -0.09 -1.29 0.83 -152.24 -0.13 -1.41 16 3 C -0.13 -1.85 8.22 37.16 0.31 -1.55 16 4 C 0.11 1.59 5.49 -2.41 -0.01 1.58 16 5 N -0.60 -9.96 3.31 -170.38 -0.56 -10.52 16 6 C 0.53 8.77 6.86 -10.99 -0.08 8.69 16 7 O -0.55 -11.03 16.75 5.55 0.09 -10.94 16 8 C -0.10 -1.28 2.22 -91.75 -0.20 -1.48 16 9 H 0.09 1.03 6.39 -51.93 -0.33 0.70 16 10 C -0.10 -1.13 4.78 -26.70 -0.13 -1.26 16 11 C -0.08 -0.73 5.67 -28.06 -0.16 -0.89 16 12 C -0.08 -0.82 5.74 -104.62 -0.60 -1.42 16 13 C -0.12 -1.15 9.61 -39.44 -0.38 -1.53 16 14 C -0.13 -1.15 10.05 -39.68 -0.40 -1.55 16 15 C -0.12 -1.20 10.05 -39.68 -0.40 -1.60 16 16 C -0.12 -1.29 9.61 -39.44 -0.38 -1.67 16 17 C -0.07 -0.79 5.74 -104.57 -0.60 -1.39 16 18 C -0.07 -0.87 4.97 -28.02 -0.14 -1.01 16 19 C 0.08 1.53 6.29 -3.06 -0.02 1.51 16 20 C 0.18 3.30 2.86 -66.09 -0.19 3.11 16 21 H 0.07 1.29 8.03 -51.93 -0.42 0.88 16 22 N -0.71 -16.48 4.61 -51.65 -0.24 -16.72 16 23 C -0.24 -6.40 9.98 -15.06 -0.15 -6.55 16 24 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 26 N -0.93 -26.93 13.06 55.49 0.72 -26.21 16 27 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 30 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.69 7.91 -51.93 -0.41 0.28 16 34 H 0.07 1.21 6.37 -51.93 -0.33 0.87 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.10 7.99 -51.93 -0.41 0.69 16 38 H 0.07 0.79 6.78 -51.93 -0.35 0.44 16 39 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.07 0.80 8.12 -51.93 -0.42 0.38 16 41 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.12 0.87 8.05 -52.49 -0.42 0.45 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 46 H 0.12 1.25 8.05 -52.49 -0.42 0.83 16 47 H 0.08 1.07 8.13 -51.93 -0.42 0.64 16 48 H 0.08 1.17 8.11 -51.92 -0.42 0.75 16 49 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.07 1.65 8.05 -51.92 -0.42 1.23 16 51 H 0.39 9.42 6.10 -40.82 -0.25 9.17 16 52 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 407.06 15.07 6.13 6.13 Total: -1.00 -30.87 407.06 -11.11 -41.98 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -8.80 Total: 9.39 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -3.43 Total: -10.04 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: -0.08 Total: -53.45 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.87 -11.11 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996348795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.198 kcal (2) G-P(sol) polarization free energy of solvation -30.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds