Wall clock time and date at job start Wed Apr 1 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 110.77796 * 2 1 4 4 C 1.54320 * 110.72231 * 123.23799 * 2 1 3 5 5 N 1.47021 * 107.26962 * 140.55519 * 4 2 1 6 6 C 1.34778 * 125.64848 * 181.02221 * 5 4 2 7 7 O 1.21282 * 119.99994 * 5.05983 * 6 5 4 8 8 C 1.50701 * 119.99845 * 184.78037 * 6 5 4 9 9 H 1.08998 * 109.68365 * 25.84148 * 8 6 5 10 10 C 1.53325 * 109.67992 * 146.35942 * 8 6 5 11 11 C 1.52708 * 108.40027 * 189.54646 * 10 8 6 12 12 C 1.50639 * 110.61390 * 308.95226 * 11 10 8 13 13 C 1.38913 * 117.74794 * 197.39799 * 12 11 10 14 14 C 1.37932 * 120.53932 * 180.56051 * 13 12 11 15 15 C 1.38261 * 119.77697 * 0.02562 * 14 13 12 16 16 C 1.37941 * 119.76817 * 359.88220 * 15 14 13 17 17 C 1.37658 * 122.56417 * 17.76207 * 12 11 10 18 18 C 1.50629 * 122.56256 * 359.26217 * 17 12 11 19 19 C 1.47421 * 108.70634 * 1.29265 * 5 4 2 20 20 C 1.55135 * 104.72065 * 335.55154 * 19 5 4 21 21 H 1.08998 * 111.22069 * 279.17826 * 20 19 5 22 22 N 1.46496 * 110.90759 * 155.27488 * 20 19 5 23 23 C 1.36940 * 120.00112 * 92.97366 * 22 20 19 24 24 H 1.08001 * 119.99956 * 0.02562 * 23 22 20 25 25 C 1.38812 * 120.00152 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99987 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00216 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47084 * 90.00207 * 27 25 23 29 29 H 1.48499 * 109.47113 * 210.00225 * 27 25 23 30 30 H 1.48503 * 109.46852 * 330.00317 * 27 25 23 31 31 H 1.09000 * 109.47558 * 298.20780 * 1 2 3 32 32 H 1.08999 * 109.47320 * 58.21691 * 1 2 3 33 33 H 1.09001 * 109.46871 * 178.21490 * 1 2 3 34 34 H 1.09000 * 109.46976 * 181.78277 * 3 2 1 35 35 H 1.08996 * 109.47263 * 301.78451 * 3 2 1 36 36 H 1.09005 * 109.46823 * 61.78633 * 3 2 1 37 37 H 1.09004 * 109.88252 * 21.14599 * 4 2 1 38 38 H 1.09000 * 110.01417 * 260.04922 * 4 2 1 39 39 H 1.09001 * 109.68002 * 309.30818 * 10 8 6 40 40 H 1.09004 * 109.68539 * 69.86245 * 10 8 6 41 41 H 1.09005 * 109.26324 * 188.64626 * 11 10 8 42 42 H 1.08998 * 109.19136 * 69.20702 * 11 10 8 43 43 H 1.07993 * 119.73526 * 0.56618 * 13 12 11 44 44 H 1.08002 * 120.11443 * 180.02562 * 14 13 12 45 45 H 1.07995 * 120.12127 * 179.85825 * 15 14 13 46 46 H 1.08000 * 119.72207 * 180.02562 * 16 15 14 47 47 H 1.09004 * 109.25289 * 257.49755 * 18 17 12 48 48 H 1.09004 * 109.22604 * 138.05148 * 18 17 12 49 49 H 1.08999 * 110.37012 * 94.47527 * 19 5 4 50 50 H 1.09001 * 110.37220 * 216.80076 * 19 5 4 51 51 H 0.96999 * 119.99791 * 272.97664 * 22 20 19 52 52 H 0.96996 * 120.00042 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4306 0.0000 4 6 2.0760 -0.7911 1.2072 5 7 3.2445 -1.5507 0.7389 6 6 3.9923 -2.3835 1.4896 7 8 3.6667 -2.6274 2.6322 8 6 5.2297 -3.0166 0.9073 9 1 5.6214 -2.3888 0.1069 10 6 6.2907 -3.1793 2.0022 11 6 7.6037 -3.5958 1.3430 12 6 7.3888 -4.7765 0.4325 13 6 8.5053 -5.5078 0.0472 14 6 8.3761 -6.5929 -0.7944 15 6 7.1258 -6.9562 -1.2594 16 6 6.0157 -6.2325 -0.8764 17 6 6.1433 -5.1411 -0.0266 18 6 4.8891 -4.3998 0.3561 19 6 3.4666 -1.2454 -0.6862 20 6 2.0789 -0.7953 -1.2139 21 1 1.4448 -1.6531 -1.4380 22 7 2.2214 0.0698 -2.3875 23 6 2.1868 -0.4711 -3.6451 24 1 2.0540 -1.5354 -3.7717 25 6 2.3212 0.3486 -4.7572 26 7 2.4825 1.6458 -4.6029 27 14 2.2732 -0.3891 -6.4727 28 1 0.8722 -0.4074 -6.9646 29 1 3.1083 0.4302 -7.3873 30 1 2.8010 -1.7765 -6.4297 31 1 -0.3634 0.4857 0.9056 32 1 -0.3634 0.5413 -0.8735 33 1 -0.3633 -1.0272 -0.0320 34 1 3.1620 1.4058 -0.0320 35 1 1.6956 1.9623 -0.8735 36 1 1.7474 1.9426 0.9056 37 1 1.3130 -1.4759 1.5775 38 1 2.3735 -0.1043 1.9996 39 1 6.4262 -2.2327 2.5255 40 1 5.9751 -3.9476 2.7080 41 1 8.3245 -3.8641 2.1154 42 1 7.9938 -2.7603 0.7619 43 1 9.4823 -5.2245 0.4097 44 1 9.2488 -7.1568 -1.0892 45 1 7.0186 -7.8035 -1.9205 46 1 5.0393 -6.5172 -1.2398 47 1 4.3537 -4.9679 1.1169 48 1 4.2546 -4.2900 -0.5233 49 1 4.1946 -0.4413 -0.7929 50 1 3.8032 -2.1360 -1.2170 51 1 2.3403 1.0257 -2.2738 52 1 2.5769 2.2186 -5.3800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996348797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:43 Heat of formation + Delta-G solvation = -15.817609 kcal Electronic energy + Delta-G solvation = -30656.137200 eV Core-core repulsion = 26812.486480 eV Total energy + Delta-G solvation = -3843.650720 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.62940 -39.64365 -38.09525 -35.75079 -34.16013 -33.23055 -32.64402 -30.85598 -30.48792 -29.07970 -27.55841 -27.02869 -26.41946 -24.18858 -23.87144 -22.99794 -22.26204 -21.47700 -19.88922 -18.82377 -18.42647 -17.35700 -16.90641 -16.58839 -15.88828 -15.63649 -15.33855 -14.81920 -14.47316 -14.34633 -14.11193 -13.96114 -13.78105 -13.66724 -13.36749 -13.14142 -12.93216 -12.86985 -12.75926 -12.59254 -12.19268 -12.00037 -11.95948 -11.63120 -11.56057 -11.49206 -11.31486 -11.09025 -11.03780 -10.93961 -10.92033 -10.56416 -10.53358 -10.48034 -10.24607 -9.91599 -9.73100 -9.50949 -9.02804 -8.85383 -8.64550 -8.33045 -7.11043 -5.88714 -3.18876 1.26462 1.27222 2.78166 3.20916 3.37010 3.43206 3.44135 3.64435 4.39610 4.49825 4.51460 4.68104 4.80795 4.84720 4.90158 4.98421 5.03497 5.07091 5.14440 5.17801 5.26535 5.37966 5.43260 5.47804 5.52813 5.59667 5.63656 5.69187 5.74702 5.77646 5.78224 5.87236 5.87880 5.92485 5.98814 6.00932 6.06789 6.12948 6.17693 6.20543 6.31286 6.33596 6.38422 6.41046 6.42720 6.55616 6.56809 6.65483 6.70690 6.86820 6.91468 7.60457 7.80247 8.29240 8.37047 9.41898 9.95606 10.30895 11.33346 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008939 B = 0.003594 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3131.725869 B = 7788.229067 C =10079.033396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.134 4.134 4 C 0.120 3.880 5 N -0.611 5.611 6 C 0.532 3.468 7 O -0.553 6.553 8 C -0.102 4.102 9 H 0.095 0.905 10 C -0.098 4.098 11 C -0.081 4.081 12 C -0.075 4.075 13 C -0.121 4.121 14 C -0.124 4.124 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.069 4.069 18 C -0.068 4.068 19 C 0.071 3.929 20 C 0.182 3.818 21 H 0.068 0.932 22 N -0.709 5.709 23 C -0.248 4.248 24 H 0.071 0.929 25 C -0.006 4.006 26 N -0.929 5.929 27 Si 0.906 3.094 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.069 0.931 50 H 0.069 0.931 51 H 0.390 0.610 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.761 -10.924 11.296 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.191 4.191 4 C -0.003 4.003 5 N -0.343 5.343 6 C 0.320 3.680 7 O -0.432 6.432 8 C -0.123 4.123 9 H 0.113 0.887 10 C -0.136 4.136 11 C -0.118 4.118 12 C -0.075 4.075 13 C -0.139 4.139 14 C -0.142 4.142 15 C -0.141 4.141 16 C -0.135 4.135 17 C -0.069 4.069 18 C -0.106 4.106 19 C -0.055 4.055 20 C 0.069 3.931 21 H 0.086 0.914 22 N -0.350 5.350 23 C -0.379 4.379 24 H 0.089 0.911 25 C -0.203 4.203 26 N -0.577 5.577 27 Si 0.737 3.263 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.101 0.899 48 H 0.100 0.900 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.227 0.773 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.612 -11.163 11.744 17.902 hybrid contribution 0.165 -0.065 -1.175 1.188 sum 7.777 -11.229 10.569 17.271 Atomic orbital electron populations 1.21681 0.93446 1.01666 1.01813 1.21879 0.96063 0.95998 0.95002 1.21716 1.00955 0.94705 1.01754 1.22029 0.87556 0.94155 0.96567 1.48550 1.29556 1.43746 1.12484 1.20196 0.84081 0.78350 0.85329 1.90656 1.71898 1.62091 1.18539 1.21260 0.93990 0.97353 0.99711 0.88684 1.21372 0.92953 1.02585 0.96681 1.20508 0.98007 0.95695 0.97566 1.19635 0.92514 0.97094 0.98292 1.21129 0.98063 0.95940 0.98767 1.21045 0.97432 0.97510 0.98253 1.21052 0.92778 0.99996 1.00271 1.21173 0.99023 0.95406 0.97884 1.19520 0.93996 0.96072 0.97291 1.20364 0.95188 0.93379 1.01631 1.23583 1.02609 1.00628 0.78645 1.21371 0.91663 0.93408 0.86629 0.91390 1.42446 1.86061 1.06557 0.99973 1.19254 1.42781 0.92691 0.83204 0.91056 1.24733 1.02257 0.95412 0.97897 1.69648 1.55972 1.02725 1.29340 0.86215 0.77505 0.78081 0.84516 1.21614 1.21722 1.20672 0.93213 0.91388 0.92877 0.92634 0.90932 0.93286 0.91774 0.92001 0.91029 0.90603 0.90399 0.90328 0.86258 0.86269 0.86165 0.86032 0.89870 0.89962 0.91271 0.91263 0.77338 0.93329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.49 37.16 0.32 -1.52 16 2 C -0.09 -1.36 0.85 -152.68 -0.13 -1.49 16 3 C -0.13 -2.07 7.55 37.16 0.28 -1.79 16 4 C 0.12 1.81 6.04 -3.07 -0.02 1.79 16 5 N -0.61 -9.53 3.32 -170.38 -0.57 -10.10 16 6 C 0.53 8.33 6.84 -10.98 -0.08 8.25 16 7 O -0.55 -10.15 16.78 5.56 0.09 -10.05 16 8 C -0.10 -1.32 1.96 -91.74 -0.18 -1.50 16 9 H 0.09 1.23 7.12 -51.93 -0.37 0.86 16 10 C -0.10 -1.13 4.80 -26.71 -0.13 -1.26 16 11 C -0.08 -0.80 5.67 -28.06 -0.16 -0.96 16 12 C -0.08 -0.84 5.74 -104.61 -0.60 -1.44 16 13 C -0.12 -1.22 9.61 -39.44 -0.38 -1.60 16 14 C -0.12 -1.21 10.05 -39.68 -0.40 -1.61 16 15 C -0.12 -1.25 10.05 -39.68 -0.40 -1.65 16 16 C -0.12 -1.30 9.61 -39.44 -0.38 -1.68 16 17 C -0.07 -0.82 5.74 -104.62 -0.60 -1.42 16 18 C -0.07 -0.84 4.97 -28.05 -0.14 -0.98 16 19 C 0.07 1.18 5.56 -2.41 -0.01 1.17 16 20 C 0.18 3.31 2.97 -65.66 -0.20 3.12 16 21 H 0.07 1.28 7.99 -51.93 -0.41 0.87 16 22 N -0.71 -16.05 5.15 -51.24 -0.26 -16.31 16 23 C -0.25 -6.37 9.96 -15.06 -0.15 -6.52 16 24 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 25 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -26.44 13.06 55.49 0.72 -25.71 16 27 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.05 0.73 8.13 -51.93 -0.42 0.30 16 34 H 0.05 0.89 7.42 -51.93 -0.39 0.50 16 35 H 0.07 1.26 6.75 -51.93 -0.35 0.91 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.96 7.82 -51.93 -0.41 0.55 16 38 H 0.06 0.92 7.85 -51.93 -0.41 0.51 16 39 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 40 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.08 0.65 8.13 -51.93 -0.42 0.22 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.12 0.96 8.05 -52.49 -0.42 0.54 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 1.20 8.05 -52.49 -0.42 0.78 16 47 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 48 H 0.08 1.01 7.77 -51.93 -0.40 0.60 16 49 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 50 H 0.07 1.12 7.32 -51.93 -0.38 0.74 16 51 H 0.39 9.33 5.45 -40.82 -0.22 9.11 16 52 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -29.59 405.83 -11.14 -40.73 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -8.78 Total: 10.37 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -3.44 Total: -11.36 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: -0.11 Total: -52.12 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.59 -11.14 -40.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996348797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.916 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds