Wall clock time and date at job start Wed Apr 1 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 110.88799 * 2 1 4 4 C 1.55134 * 111.19524 * 236.06877 * 2 1 3 5 5 N 1.47430 * 104.71966 * 279.19492 * 4 2 1 6 6 C 1.34776 * 125.64673 * 155.82391 * 5 4 2 7 7 O 1.21280 * 120.00318 * 4.92084 * 6 5 4 8 8 C 1.50699 * 119.99845 * 184.93391 * 6 5 4 9 9 H 1.08996 * 109.71361 * 326.10609 * 8 6 5 10 10 C 1.53327 * 109.68223 * 205.56357 * 8 6 5 11 11 C 1.52738 * 108.37758 * 170.36675 * 10 8 6 12 12 C 1.50639 * 110.58440 * 51.07492 * 11 10 8 13 13 C 1.38912 * 117.74339 * 162.70745 * 12 11 10 14 14 C 1.37933 * 120.54416 * 180.02562 * 13 12 11 15 15 C 1.38264 * 119.76904 * 359.47906 * 14 13 12 16 16 C 1.37937 * 119.77170 * 0.35065 * 15 14 13 17 17 C 1.37659 * 122.56892 * 342.42662 * 12 11 10 18 18 C 1.50629 * 122.56967 * 0.40713 * 17 12 11 19 19 C 1.47026 * 108.70219 * 335.54747 * 5 4 2 20 20 C 1.54323 * 107.27165 * 1.28973 * 19 5 4 21 21 H 1.08996 * 110.72478 * 263.82793 * 20 19 5 22 22 N 1.46499 * 110.71695 * 140.72848 * 20 19 5 23 23 C 1.36938 * 119.99608 * 86.45874 * 22 20 19 24 24 H 1.08003 * 120.00238 * 359.97438 * 23 22 20 25 25 C 1.38817 * 120.00095 * 179.97438 * 23 22 20 26 26 N 1.31619 * 119.99747 * 359.97438 * 25 23 22 27 27 Si 1.86793 * 120.00011 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47218 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47253 * 120.00214 * 27 25 23 30 30 H 1.48509 * 109.47249 * 239.99831 * 27 25 23 31 31 H 1.08993 * 109.47322 * 296.11671 * 1 2 3 32 32 H 1.08999 * 109.47081 * 56.12015 * 1 2 3 33 33 H 1.09001 * 109.47081 * 176.11875 * 1 2 3 34 34 H 1.08993 * 109.47590 * 183.87913 * 3 2 1 35 35 H 1.09001 * 109.47200 * 303.88207 * 3 2 1 36 36 H 1.09002 * 109.47378 * 63.88113 * 3 2 1 37 37 H 1.08993 * 110.49662 * 160.35078 * 4 2 1 38 38 H 1.08996 * 110.34174 * 37.95095 * 4 2 1 39 39 H 1.08994 * 109.68648 * 50.64710 * 10 8 6 40 40 H 1.09000 * 109.71721 * 290.10390 * 10 8 6 41 41 H 1.08997 * 109.25352 * 290.79548 * 11 10 8 42 42 H 1.08997 * 109.25773 * 171.35835 * 11 10 8 43 43 H 1.07999 * 119.73201 * 359.79887 * 13 12 11 44 44 H 1.08002 * 120.11489 * 179.75421 * 14 13 12 45 45 H 1.08002 * 120.11320 * 180.37849 * 15 14 13 46 46 H 1.08000 * 119.72486 * 180.02562 * 16 15 14 47 47 H 1.09003 * 109.26196 * 222.14910 * 18 17 12 48 48 H 1.08999 * 109.23897 * 102.72486 * 18 17 12 49 49 H 1.08994 * 109.87944 * 120.71186 * 19 5 4 50 50 H 1.08999 * 109.88184 * 241.87350 * 19 5 4 51 51 H 0.96995 * 120.00336 * 266.45451 * 22 20 19 52 52 H 0.96996 * 120.00001 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0909 -0.8074 -1.2001 5 7 2.0139 -2.2162 -0.7725 6 6 1.9472 -3.2835 -1.5928 7 8 2.0373 -3.1326 -2.7928 8 6 1.7604 -4.6644 -1.0190 9 1 2.2703 -4.7353 -0.0582 10 6 2.3334 -5.7073 -1.9859 11 6 2.3498 -7.0613 -1.2794 12 6 0.9997 -7.3644 -0.6839 13 6 0.7282 -8.6809 -0.3336 14 6 -0.4898 -9.0232 0.2157 15 6 -1.4451 -8.0468 0.4297 16 6 -1.1762 -6.7384 0.0856 17 6 0.0469 -6.3930 -0.4752 18 6 0.2710 -4.9471 -0.8330 19 6 2.0285 -2.2644 0.6969 20 6 2.0862 -0.8075 1.2025 21 1 3.1133 -0.5155 1.4212 22 7 1.2375 -0.6351 2.3842 23 6 1.7368 -0.9035 3.6307 24 1 2.7560 -1.2428 3.7427 25 6 0.9329 -0.7397 4.7505 26 7 -0.3091 -0.3258 4.6141 27 14 1.6138 -1.1066 6.4508 28 1 3.0248 -1.5540 6.3330 29 1 1.5510 0.1207 7.2846 30 1 0.8064 -2.1787 7.0866 31 1 -0.3633 0.4523 0.9227 32 1 -0.3633 0.5729 -0.8532 33 1 -0.3633 -1.0253 -0.0696 34 1 3.1629 1.4034 -0.0695 35 1 1.6698 1.9731 -0.8532 36 1 1.7824 1.9302 0.9227 37 1 3.1253 -0.5271 -1.3985 38 1 1.4765 -0.6457 -2.0858 39 1 3.3485 -5.4280 -2.2679 40 1 1.7079 -5.7656 -2.8767 41 1 3.0968 -7.0436 -0.4858 42 1 2.6082 -7.8388 -1.9983 43 1 1.4757 -9.4434 -0.4959 44 1 -0.6950 -10.0496 0.4819 45 1 -2.3984 -8.3077 0.8651 46 1 -1.9228 -5.9763 0.2534 47 1 -0.1180 -4.3147 -0.0350 48 1 -0.2563 -4.7205 -1.7597 49 1 1.1219 -2.7476 1.0609 50 1 2.9063 -2.8113 1.0411 51 1 0.3221 -0.3307 2.2836 52 1 -0.8709 -0.2117 5.3965 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996348800.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:47 Heat of formation + Delta-G solvation = -14.440135 kcal Electronic energy + Delta-G solvation = -30854.176668 eV Core-core repulsion = 27010.585680 eV Total energy + Delta-G solvation = -3843.590989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.60726 -39.61809 -38.06593 -35.71667 -34.14320 -33.21021 -32.59067 -30.85615 -30.44653 -29.04664 -27.55244 -27.02148 -26.42848 -24.18928 -23.87713 -22.95662 -22.21394 -21.40898 -19.83554 -18.89324 -18.40179 -17.27728 -16.85638 -16.53454 -15.99376 -15.50581 -15.39260 -14.77223 -14.59760 -14.30955 -14.14346 -13.81138 -13.78241 -13.68132 -13.35366 -13.13877 -12.90583 -12.81607 -12.64551 -12.39438 -12.25046 -12.09817 -11.99637 -11.58829 -11.56935 -11.43875 -11.26123 -11.07247 -11.04086 -10.94024 -10.88428 -10.56860 -10.50502 -10.49277 -10.22214 -9.89675 -9.70082 -9.50711 -9.02165 -8.80537 -8.60105 -8.30500 -7.11401 -5.88430 -3.18540 1.31001 1.32065 2.79932 3.23242 3.36756 3.43403 3.44989 3.69044 4.43717 4.50265 4.53976 4.69958 4.83560 4.87937 4.93882 5.00947 5.06290 5.08403 5.17066 5.18947 5.30178 5.40600 5.46947 5.48877 5.55244 5.59490 5.68694 5.71499 5.77343 5.78180 5.82686 5.84303 5.91484 5.96774 5.97236 6.01535 6.10586 6.11607 6.20582 6.23923 6.32213 6.35425 6.41669 6.43617 6.46257 6.59605 6.61725 6.63165 6.72963 6.87544 6.96275 7.61361 7.81939 8.29804 8.38202 9.42397 9.96441 10.31525 11.33746 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.008685 B = 0.003799 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.190211 B = 7368.922395 C = 9536.904046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.609 5.609 6 C 0.533 3.467 7 O -0.554 6.554 8 C -0.101 4.101 9 H 0.095 0.905 10 C -0.098 4.098 11 C -0.081 4.081 12 C -0.077 4.077 13 C -0.122 4.122 14 C -0.125 4.125 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.068 4.068 18 C -0.068 4.068 19 C 0.073 3.927 20 C 0.181 3.819 21 H 0.065 0.935 22 N -0.711 5.711 23 C -0.247 4.247 24 H 0.072 0.928 25 C -0.007 4.007 26 N -0.929 5.929 27 Si 0.905 3.095 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.058 0.942 51 H 0.390 0.610 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.980 -10.965 -11.878 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 C -0.187 4.187 4 C -0.005 4.005 5 N -0.342 5.342 6 C 0.321 3.679 7 O -0.432 6.432 8 C -0.123 4.123 9 H 0.113 0.887 10 C -0.135 4.135 11 C -0.117 4.117 12 C -0.077 4.077 13 C -0.140 4.140 14 C -0.143 4.143 15 C -0.141 4.141 16 C -0.133 4.133 17 C -0.068 4.068 18 C -0.105 4.105 19 C -0.053 4.053 20 C 0.068 3.932 21 H 0.083 0.917 22 N -0.354 5.354 23 C -0.378 4.378 24 H 0.090 0.910 25 C -0.203 4.203 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.076 0.924 51 H 0.227 0.773 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.103 -10.969 -12.361 16.660 hybrid contribution -0.047 -0.257 1.220 1.248 sum 2.057 -11.226 -11.141 15.949 Atomic orbital electron populations 1.21636 0.93576 1.01755 1.01919 1.22013 0.96471 0.95350 0.94882 1.21647 1.00226 0.94661 1.02155 1.22334 1.00428 0.80308 0.97462 1.48548 1.71599 1.05980 1.08092 1.20192 0.76137 0.85549 0.86013 1.90654 1.51408 1.86208 1.14958 1.21253 0.98011 0.92016 1.00988 0.88689 1.21371 1.01836 0.92561 0.97774 1.20511 0.93887 0.97663 0.99684 1.19629 0.95791 0.92946 0.99292 1.21116 0.97215 0.95655 0.99996 1.21040 0.94011 0.99247 0.99974 1.21058 0.99460 0.93143 1.00389 1.21195 0.96630 0.96671 0.98853 1.19517 0.93839 0.94710 0.98724 1.20347 0.94478 0.92915 1.02806 1.23346 1.01549 1.02882 0.77515 1.21200 0.95423 0.89663 0.86885 0.91730 1.42531 1.13163 1.79317 1.00348 1.19293 0.96786 1.38071 0.83661 0.91014 1.24732 0.95966 1.01756 0.97895 1.69658 1.06670 1.52340 1.29018 0.86152 0.78043 0.77510 0.84657 1.20486 1.21797 1.21814 0.90906 0.93328 0.92792 0.92831 0.93107 0.91334 0.91774 0.91018 0.90988 0.90703 0.90437 0.90463 0.86317 0.86298 0.86144 0.85950 0.89721 0.90080 0.90770 0.92392 0.77320 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.95 37.16 0.30 -1.78 16 2 C -0.09 -1.32 0.87 -152.24 -0.13 -1.45 16 3 C -0.13 -1.80 8.68 37.15 0.32 -1.48 16 4 C 0.12 1.74 5.83 -2.40 -0.01 1.73 16 5 N -0.61 -9.50 3.31 -170.38 -0.56 -10.06 16 6 C 0.53 8.40 6.93 -10.99 -0.08 8.32 16 7 O -0.55 -10.17 16.59 5.56 0.09 -10.08 16 8 C -0.10 -1.34 2.11 -91.74 -0.19 -1.53 16 9 H 0.09 1.25 7.25 -51.93 -0.38 0.87 16 10 C -0.10 -1.15 4.69 -26.70 -0.13 -1.27 16 11 C -0.08 -0.81 5.67 -28.05 -0.16 -0.97 16 12 C -0.08 -0.89 5.74 -104.61 -0.60 -1.49 16 13 C -0.12 -1.28 9.61 -39.44 -0.38 -1.66 16 14 C -0.12 -1.28 10.05 -39.68 -0.40 -1.68 16 15 C -0.12 -1.33 10.05 -39.68 -0.40 -1.73 16 16 C -0.12 -1.39 9.61 -39.44 -0.38 -1.77 16 17 C -0.07 -0.85 5.74 -104.62 -0.60 -1.45 16 18 C -0.07 -0.88 4.97 -28.05 -0.14 -1.02 16 19 C 0.07 1.21 5.52 -3.06 -0.02 1.20 16 20 C 0.18 3.26 2.84 -66.09 -0.19 3.07 16 21 H 0.06 1.19 8.02 -51.93 -0.42 0.78 16 22 N -0.71 -16.07 5.08 -51.65 -0.26 -16.34 16 23 C -0.25 -6.33 9.98 -15.06 -0.15 -6.48 16 24 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 25 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -26.45 13.06 55.49 0.72 -25.73 16 27 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 31 H 0.07 1.30 6.35 -51.93 -0.33 0.97 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.89 7.91 -51.93 -0.41 0.48 16 34 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.90 7.99 -51.93 -0.41 0.49 16 38 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 39 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 40 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.66 8.13 -51.93 -0.42 0.23 16 43 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.12 1.35 8.05 -52.49 -0.42 0.93 16 47 H 0.08 1.15 7.67 -51.93 -0.40 0.75 16 48 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 49 H 0.07 1.33 7.57 -51.93 -0.39 0.94 16 50 H 0.06 0.93 8.01 -51.93 -0.42 0.52 16 51 H 0.39 9.34 5.28 -40.82 -0.22 9.12 16 52 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 406.75 15.07 6.13 6.13 Total: -1.00 -29.56 406.75 -11.15 -40.71 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -8.82 Total: 10.75 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -3.43 Total: -11.71 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: -0.10 Total: -52.13 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.56 -11.15 -40.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996348800.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.272 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds