Wall clock time and date at job start Wed Apr 1 2020 02:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38260 * 119.99590 * 2 1 4 4 C 1.38219 * 119.99745 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99726 * 359.74467 * 4 3 2 6 6 C 1.38216 * 120.00189 * 0.51050 * 5 4 3 7 7 C 1.50693 * 120.00382 * 179.76574 * 6 5 4 8 8 H 1.09000 * 115.56805 * 154.02974 * 7 6 5 9 9 C 1.53002 * 117.49523 * 8.34799 * 7 6 5 10 10 C 1.52996 * 117.49660 * 299.72582 * 7 6 5 11 11 H 1.09001 * 117.52040 * 0.02562 * 10 7 6 12 12 C 1.50703 * 117.49720 * 214.97571 * 10 7 6 13 13 O 1.21280 * 120.00197 * 359.97438 * 12 10 7 14 14 N 1.34785 * 120.00136 * 179.97438 * 12 10 7 15 15 C 1.48142 * 127.83203 * 359.97438 * 14 12 10 16 16 C 1.54390 * 104.61475 * 140.39596 * 15 14 12 17 17 H 1.09002 * 110.34340 * 264.99085 * 16 15 14 18 18 N 1.46504 * 110.34281 * 142.73154 * 16 15 14 19 19 C 1.36939 * 119.99658 * 89.46309 * 18 16 15 20 20 H 1.08002 * 120.00046 * 0.02562 * 19 18 16 21 21 C 1.38808 * 119.99800 * 179.97438 * 19 18 16 22 22 N 1.31617 * 120.00514 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47085 * 60.00288 * 23 21 19 25 25 H 1.48501 * 109.47222 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47220 * 300.00295 * 23 21 19 27 27 C 1.54285 * 104.96231 * 23.86591 * 16 15 14 28 28 C 1.52997 * 110.34752 * 118.87096 * 27 16 15 29 29 C 1.53007 * 110.34124 * 241.02584 * 27 16 15 30 30 C 1.48139 * 127.83831 * 179.97438 * 14 12 10 31 31 C 1.38214 * 119.99981 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47177 * 270.02691 * 1 2 3 33 33 H 1.09000 * 109.46975 * 30.02828 * 1 2 3 34 34 H 1.08999 * 109.46874 * 150.02172 * 1 2 3 35 35 H 1.07996 * 120.00454 * 359.97438 * 3 2 1 36 36 H 1.07997 * 120.00000 * 180.02562 * 4 3 2 37 37 H 1.07995 * 120.00078 * 180.27064 * 5 4 3 38 38 H 1.09002 * 117.50007 * 145.02530 * 9 7 6 39 39 H 1.09000 * 117.50057 * 359.97438 * 9 7 6 40 40 H 1.08995 * 110.41544 * 21.61259 * 15 14 12 41 41 H 1.09004 * 110.50491 * 259.22423 * 15 14 12 42 42 H 0.96995 * 119.99935 * 269.46041 * 18 16 15 43 43 H 0.97000 * 120.00702 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.47153 * 59.99933 * 28 27 16 45 45 H 1.09001 * 109.46832 * 300.00123 * 28 27 16 46 46 H 1.09004 * 109.47261 * 180.02562 * 28 27 16 47 47 H 1.08996 * 109.47087 * 298.52252 * 29 27 16 48 48 H 1.09004 * 109.46922 * 58.52269 * 29 27 16 49 49 H 1.08999 * 109.47205 * 178.52082 * 29 27 16 50 50 H 1.08993 * 110.40911 * 100.82254 * 30 14 12 51 51 H 1.09005 * 110.40913 * 338.38799 * 30 14 12 52 52 H 1.08000 * 119.99789 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0001 0.0064 6 6 3.5807 -1.1969 0.0011 7 6 4.3341 -2.5020 0.0021 8 1 3.8018 -3.3521 0.4287 9 6 5.8493 -2.4427 0.2062 10 6 5.2754 -2.7751 -1.1726 11 1 5.3504 -2.0109 -1.9462 12 6 5.3956 -4.1990 -1.6514 13 8 4.7594 -5.0772 -1.1084 14 7 6.2101 -4.4966 -2.6833 15 6 7.0594 -3.5698 -3.4671 16 6 8.3693 -4.3507 -3.7074 17 1 9.1081 -4.0944 -2.9480 18 7 8.8935 -4.0665 -5.0457 19 6 9.7524 -3.0171 -5.2359 20 1 10.0437 -2.3992 -4.3994 21 6 10.2494 -2.7482 -6.5038 22 7 9.8948 -3.5014 -7.5232 23 14 11.4216 -1.3170 -6.7632 24 1 12.6385 -1.5176 -5.9360 25 1 11.8034 -1.2435 -8.1964 26 1 10.7544 -0.0519 -6.3636 27 6 7.9739 -5.8374 -3.5910 28 6 8.2486 -6.5657 -4.9081 29 6 8.7400 -6.5035 -2.4462 30 6 6.4592 -5.8246 -3.2907 31 6 2.1981 -1.1970 0.0005 32 1 -0.3633 0.0005 1.0276 33 1 -0.3633 0.8897 -0.5143 34 1 -0.3633 -0.8902 -0.5135 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1327 0.0010 37 1 5.3517 0.0001 0.0112 38 1 6.3138 -3.2539 0.7669 39 1 6.3012 -1.4597 0.3393 40 1 7.2573 -2.6618 -2.8976 41 1 6.5828 -3.3257 -4.4166 42 1 8.6321 -4.6217 -5.7968 43 1 10.2424 -3.3138 -8.4091 44 1 9.3101 -6.4979 -5.1463 45 1 7.6670 -6.1046 -5.7064 46 1 7.9641 -7.6134 -4.8103 47 1 9.8098 -6.4576 -2.6498 48 1 8.5250 -5.9821 -1.5134 49 1 8.4310 -7.5452 -2.3598 50 1 5.8880 -5.9340 -4.2125 51 1 6.2042 -6.6179 -2.5880 52 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996400425.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:33 Heat of formation + Delta-G solvation = 27.147663 kcal Electronic energy + Delta-G solvation = -29775.669248 eV Core-core repulsion = 25933.881641 eV Total energy + Delta-G solvation = -3841.787606 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.40848 -39.60572 -38.28809 -36.34833 -34.12185 -33.14205 -32.69532 -31.00514 -30.82212 -27.66744 -27.21565 -26.95383 -26.66366 -24.02337 -23.82361 -23.28614 -22.22555 -21.60608 -19.92363 -18.89087 -18.36280 -17.46799 -17.25098 -16.57843 -15.81317 -15.54130 -15.18840 -15.09983 -14.63888 -14.21276 -14.05603 -14.00941 -13.82119 -13.58843 -13.52717 -13.31824 -12.86232 -12.64093 -12.52314 -12.47251 -12.37291 -12.01931 -11.86951 -11.71915 -11.61786 -11.43321 -11.23001 -11.10137 -10.97908 -10.93254 -10.79205 -10.54074 -10.50870 -10.46907 -10.24036 -9.89386 -9.74083 -9.60975 -9.03576 -8.91593 -8.66365 -8.39213 -7.07518 -5.86076 -3.15917 1.11542 1.21741 2.63837 3.11499 3.38355 3.43533 3.44191 3.49205 3.95298 4.33302 4.51320 4.58211 4.67854 4.71269 4.77474 4.84523 4.93672 5.00679 5.10349 5.13042 5.17273 5.21103 5.26431 5.34509 5.47463 5.48571 5.55812 5.60969 5.64947 5.68434 5.80818 5.82067 5.85231 5.89978 5.93510 5.97754 5.99602 6.06040 6.16771 6.26761 6.30708 6.30968 6.34009 6.40286 6.44177 6.48433 6.51047 6.61958 6.83496 6.83581 6.94740 7.61903 7.85145 8.31897 8.36944 9.44401 9.99322 10.34298 11.36009 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.002747 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.755281 B =10192.180799 C =11997.792247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.113 4.113 5 C -0.124 4.124 6 C -0.046 4.046 7 C -0.086 4.086 8 H 0.125 0.875 9 C -0.143 4.143 10 C -0.168 4.168 11 H 0.125 0.875 12 C 0.562 3.438 13 O -0.556 6.556 14 N -0.612 5.612 15 C 0.076 3.924 16 C 0.176 3.824 17 H 0.063 0.937 18 N -0.715 5.715 19 C -0.247 4.247 20 H 0.070 0.930 21 C -0.008 4.008 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.088 4.088 28 C -0.130 4.130 29 C -0.130 4.130 30 C 0.117 3.883 31 C -0.110 4.110 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.391 0.609 43 H 0.257 0.743 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.060 0.940 48 H 0.049 0.951 49 H 0.050 0.950 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.231 3.635 15.274 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.144 4.144 4 C -0.131 4.131 5 C -0.142 4.142 6 C -0.046 4.046 7 C -0.105 4.105 8 H 0.143 0.857 9 C -0.180 4.180 10 C -0.189 4.189 11 H 0.143 0.857 12 C 0.351 3.649 13 O -0.436 6.436 14 N -0.345 5.345 15 C -0.050 4.050 16 C 0.064 3.936 17 H 0.081 0.919 18 N -0.358 5.358 19 C -0.378 4.378 20 H 0.088 0.912 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.090 4.090 28 C -0.188 4.188 29 C -0.187 4.187 30 C -0.006 4.006 31 C -0.128 4.128 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.229 0.771 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.094 0.906 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.492 3.335 15.587 20.884 hybrid contribution 0.635 0.831 -0.680 1.248 sum -12.857 4.166 14.908 20.122 Atomic orbital electron populations 1.20792 0.91211 1.02834 1.02263 1.19903 0.96063 0.93074 0.99592 1.21027 0.94318 0.97426 1.01664 1.21113 0.94277 0.97931 0.99775 1.21087 1.00173 0.91905 1.01056 1.19122 0.93293 0.92975 0.99187 1.21070 0.91889 0.96695 1.00810 0.85661 1.23113 0.95226 1.03664 0.96017 1.22288 1.06989 0.96103 0.93565 0.85731 1.19127 0.78218 0.88989 0.78582 1.90654 1.46216 1.49243 1.57454 1.48900 1.42983 1.10957 1.31614 1.23685 0.92824 0.93531 0.94959 1.21109 0.92195 0.90218 0.90093 0.91854 1.42707 1.53764 1.35758 1.03574 1.19211 1.19322 1.05711 0.93576 0.91191 1.24734 1.00710 0.99298 0.95730 1.69636 1.48069 1.40520 0.99571 0.86288 0.80928 0.82226 0.76828 1.21223 1.21693 1.21214 1.21769 0.93460 0.97351 0.96406 1.21683 1.03511 0.98021 0.95558 1.21782 1.00335 0.99447 0.97146 1.22447 0.95475 0.85156 0.97502 1.20873 0.93341 0.97745 1.00885 0.91214 0.91577 0.91464 0.86243 0.85975 0.85766 0.87749 0.87406 0.91160 0.90616 0.77145 0.93320 0.90842 0.92020 0.93668 0.92128 0.93143 0.93091 0.91301 0.90572 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.09 -0.84 5.88 -104.62 -0.62 -1.45 16 3 C -0.13 -1.17 9.70 -39.58 -0.38 -1.56 16 4 C -0.11 -1.08 10.05 -39.58 -0.40 -1.48 16 5 C -0.12 -1.29 9.30 -39.58 -0.37 -1.66 16 6 C -0.05 -0.51 5.61 -104.63 -0.59 -1.10 16 7 C -0.09 -1.02 5.55 -91.78 -0.51 -1.53 16 8 H 0.13 1.59 7.67 -51.93 -0.40 1.19 16 9 C -0.14 -1.55 9.56 -26.73 -0.26 -1.81 16 10 C -0.17 -2.20 4.94 -91.77 -0.45 -2.66 16 11 H 0.12 1.60 7.65 -51.93 -0.40 1.20 16 12 C 0.56 9.06 7.70 -10.98 -0.08 8.97 16 13 O -0.56 -10.39 16.52 5.56 0.09 -10.30 16 14 N -0.61 -9.82 3.32 -169.29 -0.56 -10.38 16 15 C 0.08 1.28 6.53 -2.41 -0.02 1.26 16 16 C 0.18 3.25 3.35 -66.53 -0.22 3.02 16 17 H 0.06 1.20 7.66 -51.93 -0.40 0.81 16 18 N -0.72 -16.34 4.57 -52.07 -0.24 -16.58 16 19 C -0.25 -6.37 9.96 -15.06 -0.15 -6.52 16 20 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.93 -26.62 13.06 55.49 0.72 -25.89 16 23 Si 0.91 21.40 29.55 -169.99 -5.02 16.38 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 C -0.09 -1.40 1.03 -153.09 -0.16 -1.55 16 28 C -0.13 -2.10 7.12 37.16 0.26 -1.84 16 29 C -0.13 -1.85 8.24 37.16 0.31 -1.55 16 30 C 0.12 1.82 6.15 -2.39 -0.01 1.80 16 31 C -0.11 -1.19 9.39 -39.58 -0.37 -1.56 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.12 1.13 6.02 -52.49 -0.32 0.81 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.11 0.98 6.17 -51.93 -0.32 0.66 16 40 H 0.07 1.11 7.21 -51.93 -0.37 0.74 16 41 H 0.08 1.39 8.06 -51.93 -0.42 0.98 16 42 H 0.39 9.42 5.11 -40.82 -0.21 9.21 16 43 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 44 H 0.07 1.34 7.76 -51.93 -0.40 0.94 16 45 H 0.06 1.07 6.93 -51.93 -0.36 0.71 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 51 H 0.08 1.18 7.60 -51.93 -0.39 0.78 16 52 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 414.91 15.07 6.25 6.25 Total: -1.00 -29.97 414.91 -11.09 -41.06 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -8.59 Total: 11.43 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -3.75 Total: -11.98 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.07 Total: -52.85 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -29.97 -11.09 -41.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996400425.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.207 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds