Wall clock time and date at job start Wed Apr 1 2020 02:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 119.99990 * 2 1 4 4 C 1.38217 * 119.99437 * 180.02562 * 3 2 1 5 5 C 1.38249 * 120.00625 * 359.97438 * 4 3 2 6 6 C 1.38217 * 119.99906 * 359.74704 * 5 4 3 7 7 C 1.38217 * 119.99703 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.00153 * 0.02562 * 7 2 1 9 9 H 1.09000 * 115.55742 * 334.31177 * 8 7 2 10 10 C 1.52996 * 117.49618 * 188.62243 * 8 7 2 11 11 C 1.52999 * 117.49712 * 119.99977 * 8 7 2 12 12 H 1.08997 * 117.51975 * 0.02562 * 11 8 7 13 13 C 1.50700 * 117.49465 * 214.97836 * 11 8 7 14 14 O 1.21278 * 120.00484 * 359.97438 * 13 11 8 15 15 N 1.34776 * 119.99804 * 179.97438 * 13 11 8 16 16 C 1.47022 * 125.64758 * 359.97438 * 15 13 11 17 17 C 1.54327 * 107.27336 * 178.97550 * 16 15 13 18 18 H 1.09002 * 110.72173 * 219.44580 * 17 16 15 19 19 N 1.46504 * 110.72122 * 96.16784 * 17 16 15 20 20 C 1.36936 * 119.99698 * 86.45467 * 19 17 16 21 21 H 1.07997 * 120.00222 * 0.02562 * 20 19 17 22 22 C 1.38815 * 119.99415 * 179.97438 * 20 19 17 23 23 N 1.31609 * 120.00382 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99361 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47054 * 60.00920 * 24 22 20 26 26 H 1.48501 * 109.46855 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47602 * 300.00227 * 24 22 20 28 28 C 1.55165 * 102.94078 * 337.80587 * 17 16 15 29 29 C 1.52992 * 111.00458 * 153.57403 * 28 17 16 30 30 C 1.52998 * 111.00283 * 277.42764 * 28 17 16 31 31 C 1.47425 * 125.64906 * 180.02562 * 15 13 11 32 32 H 1.09002 * 109.46962 * 270.01868 * 1 2 3 33 33 H 1.09004 * 109.47136 * 30.01889 * 1 2 3 34 34 H 1.08996 * 109.47428 * 150.01956 * 1 2 3 35 35 H 1.07998 * 120.00360 * 359.97438 * 3 2 1 36 36 H 1.08007 * 119.99545 * 179.97438 * 4 3 2 37 37 H 1.08004 * 120.00211 * 179.97438 * 5 4 3 38 38 H 1.07996 * 120.00493 * 180.27388 * 6 5 4 39 39 H 1.09001 * 117.49653 * 145.01937 * 10 8 7 40 40 H 1.08996 * 117.50390 * 359.97438 * 10 8 7 41 41 H 1.08997 * 109.88723 * 59.55959 * 16 15 13 42 42 H 1.09000 * 110.01436 * 298.46511 * 16 15 13 43 43 H 0.96994 * 119.99856 * 266.45473 * 19 17 16 44 44 H 0.97006 * 120.00338 * 179.97438 * 23 22 20 45 45 H 1.09006 * 109.47371 * 59.99986 * 29 28 17 46 46 H 1.09002 * 109.47302 * 179.97438 * 29 28 17 47 47 H 1.08999 * 109.47292 * 300.00014 * 29 28 17 48 48 H 1.09000 * 109.47440 * 60.00281 * 30 28 17 49 49 H 1.09000 * 109.46954 * 179.97438 * 30 28 17 50 50 H 1.08992 * 109.47615 * 299.99949 * 30 28 17 51 51 H 1.08997 * 110.36855 * 322.93198 * 31 15 13 52 52 H 1.08999 * 110.36490 * 85.14513 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 -0.0005 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1971 0.0053 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 1 0.4418 -2.4662 0.4264 10 6 2.2532 -3.7848 0.2046 11 6 1.6794 -3.4535 -1.1745 12 1 2.3792 -3.1359 -1.9475 13 6 0.5066 -4.2692 -1.6544 14 8 -0.5724 -4.1575 -1.1121 15 7 0.6569 -5.1229 -2.6865 16 6 1.9027 -5.3554 -3.4317 17 6 1.6042 -6.4285 -4.4999 18 1 2.4404 -7.1212 -4.5950 19 7 1.2967 -5.8048 -5.7894 20 6 2.3098 -5.4786 -6.6510 21 1 3.3354 -5.6815 -6.3802 22 6 2.0184 -4.8881 -7.8731 23 7 0.7686 -4.6413 -8.2034 24 14 3.4005 -4.4426 -9.0481 25 1 4.1546 -5.6688 -9.4130 26 1 2.8295 -3.8291 -10.2740 27 1 4.3161 -3.4753 -8.3915 28 6 0.3556 -7.1504 -3.9278 29 6 -0.4804 -7.7716 -5.0485 30 6 0.7575 -8.2067 -2.8964 31 6 -0.4011 -5.9774 -3.2557 32 1 -0.3633 0.0003 1.0277 33 1 -0.3633 0.8898 -0.5141 34 1 -0.3634 -0.8901 -0.5135 35 1 1.6583 2.1326 -0.0004 36 1 4.1205 2.1325 -0.0010 37 1 5.3517 -0.0001 -0.0014 38 1 4.1205 -2.1324 0.0098 39 1 1.7825 -4.5927 0.7647 40 1 3.3303 -3.6847 0.3384 41 1 2.6787 -5.7123 -2.7546 42 1 2.2269 -4.4330 -3.9135 43 1 0.3756 -5.6229 -6.0328 44 1 0.5650 -4.2283 -9.0572 45 1 0.1239 -8.4972 -5.5931 46 1 -1.3489 -8.2715 -4.6197 47 1 -0.8114 -6.9891 -5.7313 48 1 1.2913 -7.7282 -2.0753 49 1 -0.1366 -8.6970 -2.5113 50 1 1.4039 -8.9471 -3.3675 51 1 -1.0537 -6.3498 -2.4662 52 1 -0.9793 -5.4234 -3.9951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996405712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:41 Heat of formation + Delta-G solvation = 22.280169 kcal Electronic energy + Delta-G solvation = -30295.468289 eV Core-core repulsion = 26453.469612 eV Total energy + Delta-G solvation = -3841.998677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.44573 -39.61850 -38.18103 -36.14379 -33.93716 -33.17426 -32.92042 -30.78248 -30.68586 -27.94507 -27.13625 -26.77911 -26.62810 -24.16089 -23.96063 -23.20438 -21.51961 -21.46830 -20.27851 -18.94731 -18.50890 -17.37982 -17.15412 -16.33411 -15.86729 -15.52750 -15.11843 -14.96981 -14.72273 -14.27438 -14.12099 -13.89319 -13.88034 -13.53761 -13.20255 -13.13486 -12.72421 -12.59459 -12.46815 -12.34098 -12.24775 -12.06428 -11.92078 -11.82432 -11.63431 -11.51408 -11.27002 -11.01724 -11.00661 -10.90745 -10.74361 -10.57234 -10.48905 -10.42556 -10.28669 -9.86339 -9.69843 -9.58911 -9.00767 -8.86903 -8.55189 -8.21742 -7.07871 -5.85113 -3.15189 1.18611 1.28147 2.71472 3.25045 3.38855 3.43810 3.44892 3.56122 4.00653 4.42889 4.50805 4.64465 4.73097 4.75859 4.82760 4.87677 4.91854 5.08114 5.09672 5.21381 5.23354 5.24562 5.43367 5.44639 5.52421 5.58090 5.58475 5.60898 5.70343 5.74530 5.77811 5.85331 5.90778 5.95476 5.95976 6.00453 6.11864 6.12185 6.19109 6.21518 6.28284 6.35434 6.39455 6.39827 6.41248 6.57239 6.58428 6.67202 6.77423 6.90160 6.90708 7.61785 7.90365 8.32620 8.45376 9.44636 9.99422 10.34207 11.36911 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.009195 B = 0.003299 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3044.486902 B = 8486.206721 C =10373.746382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.052 4.052 8 C -0.086 4.086 9 H 0.127 0.873 10 C -0.145 4.145 11 C -0.167 4.167 12 H 0.125 0.875 13 C 0.556 3.444 14 O -0.556 6.556 15 N -0.599 5.599 16 C 0.072 3.928 17 C 0.179 3.821 18 H 0.070 0.930 19 N -0.712 5.712 20 C -0.248 4.248 21 H 0.071 0.929 22 C -0.007 4.007 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.089 4.089 29 C -0.125 4.125 30 C -0.129 4.129 31 C 0.121 3.879 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.076 0.924 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.069 0.931 48 H 0.052 0.948 49 H 0.052 0.948 50 H 0.058 0.942 51 H 0.069 0.931 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 3.235 18.080 18.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.052 4.052 8 C -0.105 4.105 9 H 0.145 0.855 10 C -0.182 4.182 11 C -0.188 4.188 12 H 0.143 0.857 13 C 0.344 3.656 14 O -0.436 6.436 15 N -0.330 5.330 16 C -0.054 4.054 17 C 0.067 3.933 18 H 0.087 0.913 19 N -0.353 5.353 20 C -0.379 4.379 21 H 0.089 0.911 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.737 3.263 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.090 4.090 29 C -0.183 4.183 30 C -0.187 4.187 31 C -0.001 4.001 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.223 0.777 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.087 0.913 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.879 3.376 18.262 18.793 hybrid contribution 0.666 0.538 -0.973 1.297 sum 3.545 3.914 17.288 18.077 Atomic orbital electron populations 1.20875 0.91052 1.03463 1.02355 1.19754 0.96251 0.92333 0.98996 1.21020 0.94280 0.97363 1.01164 1.21119 0.94308 0.98033 1.00503 1.21086 0.99790 0.92441 1.00905 1.21058 0.93540 0.98361 1.00341 1.19006 0.93026 0.92765 1.00390 1.21072 1.00674 0.87810 1.00894 0.85494 1.23093 1.00184 0.98726 0.96243 1.22310 1.00319 1.02755 0.93400 0.85714 1.19154 0.88449 0.79018 0.78936 1.90648 1.27791 1.67366 1.57771 1.48283 1.12963 1.40220 1.31535 1.23265 0.85220 1.02463 0.94409 1.21218 0.94663 0.91509 0.85915 0.91262 1.42446 1.07330 1.71684 1.13853 1.19168 0.88384 1.33698 0.96621 0.91086 1.24731 0.96177 1.01391 0.98029 1.69639 1.16522 1.48226 1.23234 0.86292 0.81228 0.78186 0.80587 1.21177 1.21691 1.21245 1.22009 0.97034 0.94212 0.95787 1.21576 0.98353 1.01154 0.97219 1.21677 1.01034 0.97864 0.98095 1.22273 0.90192 0.90588 0.97085 0.91153 0.91584 0.90559 0.86094 0.86223 0.86120 0.85840 0.87896 0.87573 0.92717 0.90570 0.77736 0.93316 0.92067 0.93629 0.91200 0.92875 0.92845 0.92309 0.91283 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 9.33 36.01 0.34 -0.97 16 2 C -0.07 -0.87 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 5 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.12 -1.26 9.30 -39.58 -0.37 -1.63 16 7 C -0.05 -0.63 5.61 -104.62 -0.59 -1.22 16 8 C -0.09 -1.08 4.66 -91.77 -0.43 -1.51 16 9 H 0.13 1.71 6.43 -51.93 -0.33 1.37 16 10 C -0.15 -1.59 9.56 -26.73 -0.26 -1.85 16 11 C -0.17 -2.31 5.17 -91.77 -0.47 -2.78 16 12 H 0.12 1.75 7.73 -51.93 -0.40 1.35 16 13 C 0.56 9.47 7.63 -10.99 -0.08 9.38 16 14 O -0.56 -10.86 16.51 5.56 0.09 -10.77 16 15 N -0.60 -10.12 3.31 -170.51 -0.56 -10.69 16 16 C 0.07 1.22 5.70 -3.06 -0.02 1.20 16 17 C 0.18 3.24 2.87 -66.09 -0.19 3.05 16 18 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16 19 N -0.71 -16.40 4.61 -51.64 -0.24 -16.64 16 20 C -0.25 -6.42 9.98 -15.06 -0.15 -6.57 16 21 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 23 N -0.93 -26.97 13.06 55.49 0.72 -26.25 16 24 Si 0.91 21.59 29.55 -169.99 -5.02 16.56 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 C -0.09 -1.38 0.83 -152.35 -0.13 -1.50 16 29 C -0.13 -1.97 8.22 37.15 0.31 -1.67 16 30 C -0.13 -1.66 8.57 37.16 0.32 -1.34 16 31 C 0.12 2.03 5.81 -2.52 -0.01 2.01 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.08 0.95 6.65 -51.93 -0.35 0.60 16 35 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 38 H 0.12 1.15 6.02 -52.49 -0.32 0.84 16 39 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.11 0.95 6.17 -51.93 -0.32 0.63 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.45 7.96 -51.93 -0.41 1.04 16 43 H 0.39 9.62 6.10 -40.82 -0.25 9.37 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.28 6.38 -51.93 -0.33 0.94 16 48 H 0.05 0.68 7.91 -51.93 -0.41 0.27 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.07 1.12 7.95 -51.93 -0.41 0.70 16 52 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 LS Contribution 413.50 15.07 6.23 6.23 Total: -1.00 -30.39 413.50 -10.97 -41.36 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: -8.56 Total: 12.28 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.63 Total: -12.08 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: -0.08 Total: -53.58 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.39 -10.97 -41.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996405712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.639 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds