Wall clock time and date at job start Wed Apr 1 2020 02:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 120.00148 * 2 1 4 4 C 1.38219 * 120.00173 * 180.27757 * 3 2 1 5 5 C 1.38260 * 119.99804 * 359.74424 * 4 3 2 6 6 C 1.38210 * 119.99670 * 359.97438 * 5 4 3 7 7 C 1.38216 * 119.99968 * 179.74908 * 2 1 3 8 8 C 1.50698 * 119.99840 * 359.97438 * 7 2 1 9 9 H 1.08992 * 115.55606 * 334.06159 * 8 7 2 10 10 C 1.53006 * 117.51571 * 188.35542 * 8 7 2 11 11 C 1.52999 * 60.00089 * 252.52482 * 10 8 7 12 12 H 1.09002 * 117.49803 * 107.49109 * 11 10 8 13 13 C 1.50700 * 117.51845 * 252.51832 * 11 10 8 14 14 O 1.21288 * 119.99910 * 68.71707 * 13 11 10 15 15 N 1.34770 * 119.99999 * 248.71846 * 13 11 10 16 16 C 1.47016 * 125.65069 * 0.02562 * 15 13 11 17 17 C 1.54330 * 107.27086 * 181.02133 * 16 15 13 18 18 H 1.09004 * 110.71626 * 140.73167 * 17 16 15 19 19 N 1.46496 * 110.72261 * 263.83012 * 17 16 15 20 20 C 1.36939 * 119.99622 * 273.54832 * 19 17 16 21 21 H 1.07998 * 120.00731 * 359.97438 * 20 19 17 22 22 C 1.38820 * 119.99589 * 180.02562 * 20 19 17 23 23 N 1.31614 * 120.00039 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99703 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47419 * 59.99963 * 24 22 20 26 26 H 1.48498 * 109.46954 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47017 * 299.99533 * 24 22 20 28 28 C 1.55156 * 102.94077 * 22.19781 * 17 16 15 29 29 C 1.52999 * 111.00981 * 82.57173 * 28 17 16 30 30 C 1.53003 * 111.00223 * 206.42493 * 28 17 16 31 31 C 1.47428 * 125.64514 * 179.71884 * 15 13 11 32 32 H 1.09008 * 109.46865 * 270.25503 * 1 2 3 33 33 H 1.08993 * 109.47078 * 30.24861 * 1 2 3 34 34 H 1.08995 * 109.46821 * 150.25658 * 1 2 3 35 35 H 1.08001 * 120.00337 * 0.03921 * 3 2 1 36 36 H 1.07997 * 120.00103 * 179.76598 * 4 3 2 37 37 H 1.07998 * 120.00139 * 179.97438 * 5 4 3 38 38 H 1.08001 * 119.99702 * 180.02562 * 6 5 4 39 39 H 1.09003 * 117.49619 * 145.03179 * 10 8 7 40 40 H 1.08995 * 117.50015 * 0.02562 * 10 8 7 41 41 H 1.08998 * 109.88315 * 300.43749 * 16 15 13 42 42 H 1.09003 * 109.88211 * 61.60653 * 16 15 13 43 43 H 0.96995 * 119.99840 * 93.54423 * 19 17 16 44 44 H 0.97002 * 119.99827 * 180.02562 * 23 22 20 45 45 H 1.08997 * 109.46773 * 59.99513 * 29 28 17 46 46 H 1.08996 * 109.47131 * 180.02562 * 29 28 17 47 47 H 1.09001 * 109.46701 * 299.99789 * 29 28 17 48 48 H 1.09003 * 109.47540 * 59.98779 * 30 28 17 49 49 H 1.08991 * 109.47496 * 179.97438 * 30 28 17 50 50 H 1.09009 * 109.46878 * 299.99729 * 30 28 17 51 51 H 1.09004 * 110.36707 * 274.74491 * 31 15 13 52 52 H 1.08999 * 110.36905 * 37.06632 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0058 5 6 4.2718 -0.0001 -0.0063 6 6 3.5806 -1.1970 -0.0004 7 6 2.1981 -1.1970 0.0052 8 6 1.4445 -2.5020 0.0115 9 1 0.4439 -2.4651 0.4419 10 6 2.2538 -3.7846 0.2143 11 6 1.6738 -3.4557 -1.1627 12 1 2.3699 -3.1393 -1.9396 13 6 0.4986 -4.2716 -1.6362 14 8 -0.5786 -4.1567 -1.0907 15 7 0.6445 -5.1290 -2.6657 16 6 1.8878 -5.3664 -3.4135 17 6 1.5713 -6.4042 -4.5111 18 1 2.0881 -6.1550 -5.4379 19 7 1.9289 -7.7537 -4.0671 20 6 3.2059 -8.2161 -4.2421 21 1 3.9494 -7.5862 -4.7079 22 6 3.5446 -9.4951 -3.8219 23 7 2.6386 -10.2629 -3.2548 24 14 5.2868 -10.1256 -4.0601 25 1 6.2357 -9.2457 -3.3318 26 1 5.3892 -11.5091 -3.5302 27 1 5.6206 -10.1233 -5.5071 28 6 0.0350 -6.2715 -4.6820 29 6 -0.3153 -5.1031 -5.6055 30 6 -0.5741 -7.5769 -5.1977 31 6 -0.4148 -5.9888 -3.2245 32 1 -0.3633 0.0046 1.0277 33 1 -0.3633 0.8877 -0.5177 34 1 -0.3633 -0.8922 -0.5098 35 1 1.6584 2.1327 0.0006 36 1 4.1205 2.1326 -0.0096 37 1 5.3517 -0.0001 -0.0112 38 1 4.1206 -2.1323 -0.0003 39 1 1.7855 -4.5914 0.7782 40 1 3.3315 -3.6846 0.3436 41 1 2.2294 -4.4371 -3.8694 42 1 2.6542 -5.7570 -2.7440 43 1 1.2612 -8.3195 -3.6491 44 1 2.8754 -11.1565 -2.9608 45 1 0.1325 -5.2677 -6.5855 46 1 -1.3982 -5.0326 -5.7076 47 1 0.0703 -4.1762 -5.1809 48 1 -0.3692 -8.3787 -4.4883 49 1 -1.6517 -7.4564 -5.3081 50 1 -0.1352 -7.8259 -6.1640 51 1 -0.4860 -6.9185 -2.6599 52 1 -1.3710 -5.4657 -3.2177 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996405717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:45 Heat of formation + Delta-G solvation = 22.224060 kcal Electronic energy + Delta-G solvation = -30244.808943 eV Core-core repulsion = 26402.807834 eV Total energy + Delta-G solvation = -3842.001110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.45147 -39.63763 -38.18118 -36.13801 -33.93964 -33.17351 -32.96731 -30.78407 -30.71397 -27.94667 -27.17260 -26.79879 -26.62362 -24.17523 -23.95698 -23.20152 -21.55094 -21.45540 -20.28655 -18.95122 -18.49130 -17.42476 -17.13804 -16.35108 -15.86974 -15.57761 -15.05520 -14.94194 -14.78145 -14.40810 -14.04644 -13.94774 -13.84315 -13.50475 -13.27924 -13.16189 -12.77463 -12.54449 -12.46003 -12.39485 -12.28101 -12.09683 -11.91885 -11.81126 -11.63634 -11.50423 -11.29372 -11.03552 -11.00859 -10.91453 -10.74849 -10.57865 -10.45872 -10.42433 -10.29082 -9.86323 -9.70189 -9.58876 -9.01181 -8.91557 -8.59377 -8.21757 -7.08211 -5.85586 -3.15571 1.14031 1.23184 2.72730 3.22914 3.38278 3.43307 3.44379 3.54815 4.02805 4.42304 4.50239 4.63117 4.71494 4.74027 4.81293 4.88047 4.90527 5.06728 5.09297 5.17174 5.17508 5.25422 5.41242 5.44582 5.49129 5.52955 5.60258 5.61791 5.69667 5.74470 5.75615 5.85456 5.90842 5.95286 5.97216 6.00443 6.05958 6.12144 6.19159 6.21694 6.28712 6.34985 6.35182 6.37936 6.39520 6.54576 6.57698 6.66871 6.77857 6.85481 6.90564 7.61399 7.90372 8.32194 8.45427 9.44152 9.98978 10.33867 11.36428 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.002933 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.707952 B = 9545.497861 C =11002.591042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.075 4.075 3 C -0.121 4.121 4 C -0.123 4.123 5 C -0.124 4.124 6 C -0.115 4.115 7 C -0.050 4.050 8 C -0.089 4.089 9 H 0.127 0.873 10 C -0.142 4.142 11 C -0.166 4.166 12 H 0.122 0.878 13 C 0.556 3.444 14 O -0.556 6.556 15 N -0.599 5.599 16 C 0.073 3.927 17 C 0.179 3.821 18 H 0.069 0.931 19 N -0.712 5.712 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.007 4.007 23 N -0.929 5.929 24 Si 0.907 3.093 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.089 4.089 29 C -0.129 4.129 30 C -0.125 4.125 31 C 0.121 3.879 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.058 0.942 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.069 0.931 49 H 0.045 0.955 50 H 0.060 0.940 51 H 0.069 0.931 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 19.898 3.387 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.050 4.050 8 C -0.107 4.107 9 H 0.145 0.855 10 C -0.179 4.179 11 C -0.187 4.187 12 H 0.140 0.860 13 C 0.344 3.656 14 O -0.436 6.436 15 N -0.330 5.330 16 C -0.053 4.053 17 C 0.067 3.933 18 H 0.087 0.913 19 N -0.353 5.353 20 C -0.378 4.378 21 H 0.089 0.911 22 C -0.204 4.204 23 N -0.576 5.576 24 Si 0.738 3.262 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.090 4.090 29 C -0.187 4.187 30 C -0.183 4.183 31 C -0.001 4.001 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.143 0.857 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.223 0.777 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.088 0.912 49 H 0.064 0.936 50 H 0.079 0.921 51 H 0.087 0.913 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.654 19.911 3.683 20.422 hybrid contribution 1.049 -0.581 0.016 1.199 sum -1.605 19.330 3.699 19.746 Atomic orbital electron populations 1.20869 0.91084 1.03274 1.02464 1.19749 0.96214 0.92321 0.99200 1.21008 0.94265 0.97313 1.01328 1.21118 0.94301 0.98011 1.00635 1.21100 0.99831 0.92415 1.00840 1.21105 0.93602 0.98470 1.00124 1.19024 0.93022 0.92777 1.00216 1.21091 1.00790 0.87823 1.01033 0.85508 1.23110 1.00259 0.98468 0.96061 1.22267 1.00182 1.02731 0.93554 0.85983 1.19165 0.88431 0.79115 0.78871 1.90651 1.28007 1.68105 1.56825 1.48287 1.12990 1.39586 1.32167 1.23278 0.86474 0.99333 0.96261 1.21219 0.91442 0.86466 0.94205 0.91279 1.42444 1.10844 1.10487 1.71509 1.19167 0.87630 0.97388 1.33571 0.91099 1.24740 0.97737 0.96855 1.01084 1.69643 1.32881 1.09532 1.45594 0.86284 0.84329 0.77902 0.77723 1.21237 1.21723 1.21203 1.22044 0.97201 0.96263 0.93536 1.21672 1.00898 0.97189 0.98912 1.21578 0.98567 0.96020 1.02137 1.22320 0.90663 0.94092 0.93064 0.91116 0.91691 0.90587 0.86150 0.86250 0.86097 0.85701 0.87676 0.87466 0.92897 0.90384 0.77746 0.93325 0.92296 0.92825 0.92903 0.91202 0.93629 0.92074 0.91256 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.33 36.01 0.34 -0.83 16 2 C -0.07 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 4 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 5 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 6 C -0.12 -1.23 9.30 -39.58 -0.37 -1.60 16 7 C -0.05 -0.58 5.61 -104.62 -0.59 -1.17 16 8 C -0.09 -1.11 4.65 -91.77 -0.43 -1.54 16 9 H 0.13 1.70 6.44 -51.93 -0.33 1.37 16 10 C -0.14 -1.75 9.56 -26.73 -0.26 -2.01 16 11 C -0.17 -2.30 5.17 -91.77 -0.47 -2.77 16 12 H 0.12 1.58 7.68 -51.93 -0.40 1.18 16 13 C 0.56 9.45 7.63 -10.99 -0.08 9.37 16 14 O -0.56 -10.86 16.51 5.55 0.09 -10.76 16 15 N -0.60 -10.12 3.31 -170.38 -0.56 -10.68 16 16 C 0.07 1.22 5.73 -3.06 -0.02 1.20 16 17 C 0.18 3.24 2.86 -66.10 -0.19 3.05 16 18 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16 19 N -0.71 -16.28 4.61 -51.65 -0.24 -16.52 16 20 C -0.25 -6.34 9.98 -15.06 -0.15 -6.49 16 21 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.93 -26.80 13.06 55.49 0.72 -26.08 16 24 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 C -0.09 -1.38 0.83 -152.24 -0.13 -1.51 16 29 C -0.13 -1.69 8.59 37.16 0.32 -1.37 16 30 C -0.13 -1.97 8.22 37.16 0.31 -1.67 16 31 C 0.12 2.02 5.82 -2.41 -0.01 2.01 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.08 0.85 6.65 -51.93 -0.35 0.50 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.13 1.20 6.02 -52.49 -0.32 0.88 16 39 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.11 1.13 6.18 -51.93 -0.32 0.81 16 41 H 0.05 0.77 7.98 -51.93 -0.41 0.36 16 42 H 0.08 1.48 8.04 -51.93 -0.42 1.06 16 43 H 0.39 9.55 6.10 -40.82 -0.25 9.30 16 44 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.69 7.91 -51.93 -0.41 0.28 16 48 H 0.07 1.27 6.37 -51.93 -0.33 0.94 16 49 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 51 H 0.07 1.27 7.99 -51.93 -0.41 0.86 16 52 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 LS Contribution 413.43 15.07 6.23 6.23 Total: -1.00 -30.03 413.43 -10.96 -40.99 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -8.55 Total: 12.12 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -3.62 Total: -11.71 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.08 Total: -53.28 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -30.03 -10.96 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996405717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.210 kcal (2) G-P(sol) polarization free energy of solvation -30.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds