Wall clock time and date at job start Wed Apr 1 2020 02:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 110.38582 * 2 1 4 4 C 1.54391 * 110.34119 * 237.76999 * 2 1 3 5 5 N 1.48148 * 104.61688 * 264.99582 * 4 2 1 6 6 C 1.34770 * 127.83843 * 140.41916 * 5 4 2 7 7 O 1.21283 * 120.00185 * 359.97438 * 6 5 4 8 8 C 1.50694 * 120.00018 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47324 * 174.26076 * 8 6 5 10 10 H 1.08997 * 110.27235 * 56.20018 * 9 8 6 11 11 C 1.54352 * 110.30274 * 294.12242 * 9 8 6 12 12 C 1.54346 * 102.39209 * 214.72715 * 11 9 8 13 13 C 1.51361 * 105.17038 * 26.35036 * 12 11 9 14 14 C 1.38503 * 130.39337 * 162.81260 * 13 12 11 15 15 C 1.38100 * 120.21355 * 179.97438 * 14 13 12 16 16 C 1.38253 * 119.93920 * 359.97438 * 15 14 13 17 17 C 1.38099 * 119.93304 * 0.02562 * 16 15 14 18 18 C 1.38360 * 120.26462 * 359.91059 * 17 16 15 19 19 C 1.48310 * 104.39135 * 320.47360 * 5 4 2 20 20 C 1.54281 * 110.34329 * 122.23084 * 2 1 3 21 21 H 1.08998 * 110.34162 * 359.89693 * 20 2 1 22 22 N 1.46501 * 110.34243 * 237.74270 * 20 2 1 23 23 C 1.36933 * 120.00014 * 156.48149 * 22 20 2 24 24 H 1.08000 * 120.00021 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00025 * 180.02562 * 23 22 20 26 26 N 1.31615 * 119.99939 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 119.99938 * 179.97438 * 25 23 22 28 28 H 1.48505 * 109.47098 * 179.97438 * 27 25 23 29 29 H 1.48500 * 109.47137 * 59.99716 * 27 25 23 30 30 H 1.48499 * 109.47297 * 299.99783 * 27 25 23 31 31 H 1.09003 * 109.47379 * 297.77119 * 1 2 3 32 32 H 1.09003 * 109.47636 * 57.77031 * 1 2 3 33 33 H 1.09002 * 109.47545 * 177.76889 * 1 2 3 34 34 H 1.09004 * 109.46996 * 182.23172 * 3 2 1 35 35 H 1.09001 * 109.47389 * 302.22751 * 3 2 1 36 36 H 1.08997 * 109.47137 * 62.23444 * 3 2 1 37 37 H 1.09000 * 110.40470 * 23.77974 * 4 2 1 38 38 H 1.08993 * 110.40718 * 146.08910 * 4 2 1 39 39 H 1.09002 * 109.47460 * 294.26025 * 8 6 5 40 40 H 1.08999 * 109.47397 * 54.25798 * 8 6 5 41 41 H 1.09000 * 110.81899 * 332.95910 * 11 9 8 42 42 H 1.09004 * 110.81593 * 96.50351 * 11 9 8 43 43 H 1.09001 * 110.30080 * 145.27251 * 12 11 9 44 44 H 1.09000 * 110.30248 * 267.42212 * 12 11 9 45 45 H 1.07995 * 119.88863 * 359.96768 * 14 13 12 46 46 H 1.08005 * 120.02734 * 179.97438 * 15 14 13 47 47 H 1.08006 * 120.03209 * 180.02562 * 16 15 14 48 48 H 1.08000 * 119.89110 * 179.97438 * 17 16 15 49 49 H 1.09003 * 110.38627 * 280.73637 * 19 5 4 50 50 H 1.08998 * 110.50857 * 158.24999 * 19 5 4 51 51 H 0.96996 * 119.99786 * 336.47385 * 22 20 2 52 52 H 0.96996 * 120.00334 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0629 1.4342 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 2.3139 -2.1438 -0.7227 6 6 2.0773 -3.3105 -1.3546 7 8 1.6054 -3.3102 -2.4719 8 6 2.3993 -4.6153 -0.6731 9 6 1.9075 -5.7776 -1.5381 10 1 2.3435 -5.7170 -2.5353 11 6 0.3666 -5.7655 -1.6256 12 6 0.0254 -7.2702 -1.6686 13 6 1.1756 -7.9574 -0.9644 14 6 1.2687 -9.2323 -0.4314 15 6 2.4380 -9.6489 0.1738 16 6 3.5200 -8.7915 0.2480 17 6 3.4291 -7.5198 -0.2829 18 6 2.2594 -7.1000 -0.8911 19 6 2.8795 -1.9438 0.6336 20 6 2.0663 -0.7715 1.2237 21 1 1.2398 -1.1489 1.8257 22 7 2.9308 0.0924 2.0315 23 6 3.1248 -0.1821 3.3590 24 1 2.6403 -1.0352 3.8105 25 6 3.9435 0.6368 4.1246 26 7 4.5336 1.6767 3.5745 27 14 4.2076 0.2627 5.9355 28 1 5.1173 1.2788 6.5233 29 1 4.8133 -1.0855 6.0793 30 1 2.9028 0.2973 6.6436 31 1 -0.3634 0.4788 0.9093 32 1 -0.3634 0.5481 -0.8693 33 1 -0.3634 -1.0269 -0.0400 34 1 3.1521 1.4170 -0.0400 35 1 1.6758 1.9657 -0.8693 36 1 1.7407 1.9415 0.9093 37 1 1.3222 -0.7869 -2.0206 38 1 2.9937 -0.3228 -1.5807 39 1 3.4774 -4.6965 -0.5343 40 1 1.9045 -4.6501 0.2975 41 1 -0.0679 -5.2946 -0.7438 42 1 0.0341 -5.2666 -2.5360 43 1 -0.9093 -7.4613 -1.1414 44 1 -0.0449 -7.6127 -2.7010 45 1 0.4240 -9.9028 -0.4892 46 1 2.5071 -10.6436 0.5889 47 1 4.4354 -9.1158 0.7206 48 1 4.2746 -6.8504 -0.2243 49 1 3.9352 -1.6798 0.5696 50 1 2.7471 -2.8407 1.2387 51 1 3.3657 0.8587 1.6261 52 1 4.3962 1.8711 2.6342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996433421.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:18 Heat of formation + Delta-G solvation = -0.221050 kcal Electronic energy + Delta-G solvation = -30321.559522 eV Core-core repulsion = 26478.585120 eV Total energy + Delta-G solvation = -3842.974403 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.63252 -39.81706 -38.12916 -35.91081 -34.39272 -33.34453 -32.35610 -30.76136 -30.12317 -28.91972 -27.58697 -26.99186 -26.64531 -24.62197 -23.68821 -22.78869 -21.93097 -21.11378 -20.49380 -18.96631 -18.46200 -17.53211 -17.10186 -16.34853 -15.86470 -15.63952 -15.31944 -15.11068 -14.91132 -14.60780 -14.35582 -14.02353 -13.71869 -13.53071 -13.38726 -13.08592 -12.90532 -12.88440 -12.79059 -12.60677 -12.11407 -12.05561 -11.81360 -11.71097 -11.61397 -11.31540 -11.27400 -11.04957 -10.96544 -10.93169 -10.84766 -10.82571 -10.56627 -10.32164 -10.09042 -10.01687 -9.66970 -9.24544 -9.05990 -8.96892 -8.65979 -8.44487 -7.15646 -6.19162 -3.20977 1.19028 1.23047 2.79881 3.14665 3.47199 3.49614 3.60204 3.67368 4.23154 4.34156 4.58739 4.67362 4.76069 4.81107 4.85085 4.93654 5.00546 5.04616 5.09175 5.12488 5.28618 5.33470 5.38472 5.41198 5.44913 5.55908 5.59190 5.60760 5.69785 5.73459 5.77254 5.81486 5.88183 5.89070 5.92993 5.94759 6.05527 6.08166 6.14084 6.16230 6.18752 6.23802 6.32218 6.33758 6.35655 6.40531 6.50738 6.52163 6.67141 6.82735 6.83974 7.72086 7.80739 8.33154 8.66528 9.11406 9.97783 10.11902 11.28449 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010744 B = 0.002958 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.582451 B = 9463.129881 C =11371.615603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.117 3.883 5 N -0.619 5.619 6 C 0.533 3.467 7 O -0.553 6.553 8 C -0.128 4.128 9 C -0.031 4.031 10 H 0.094 0.906 11 C -0.110 4.110 12 C -0.084 4.084 13 C -0.095 4.095 14 C -0.111 4.111 15 C -0.122 4.122 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.090 4.090 19 C 0.076 3.924 20 C 0.182 3.818 21 H 0.063 0.937 22 N -0.727 5.727 23 C -0.338 4.338 24 H 0.065 0.935 25 C -0.040 4.040 26 N -0.940 5.940 27 Si 1.078 2.922 28 H -0.285 1.285 29 H -0.295 1.295 30 H -0.295 1.295 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.118 0.882 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.374 0.626 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.650 -16.892 -10.095 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.189 4.189 4 C -0.006 4.006 5 N -0.352 5.352 6 C 0.322 3.678 7 O -0.432 6.432 8 C -0.168 4.168 9 C -0.050 4.050 10 H 0.112 0.888 11 C -0.147 4.147 12 C -0.121 4.121 13 C -0.095 4.095 14 C -0.129 4.129 15 C -0.140 4.140 16 C -0.139 4.139 17 C -0.123 4.123 18 C -0.090 4.090 19 C -0.049 4.049 20 C 0.069 3.931 21 H 0.081 0.919 22 N -0.372 5.372 23 C -0.469 4.469 24 H 0.083 0.917 25 C -0.238 4.238 26 N -0.585 5.585 27 Si 0.909 3.091 28 H -0.210 1.210 29 H -0.222 1.222 30 H -0.222 1.222 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.098 0.902 45 H 0.136 0.864 46 H 0.139 0.861 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.093 0.907 50 H 0.089 0.911 51 H 0.211 0.789 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.226 -16.631 -9.201 20.001 hybrid contribution -0.418 -0.444 -1.285 1.423 sum -6.645 -17.075 -10.486 21.111 Atomic orbital electron populations 1.21777 0.93997 1.01303 1.01620 1.21754 0.95905 0.96045 0.95351 1.21694 1.00861 0.94495 1.01862 1.22390 1.00411 0.81241 0.96542 1.49087 1.62423 1.05255 1.18458 1.20187 0.77725 0.84209 0.85639 1.90652 1.45850 1.87244 1.19481 1.21695 1.03387 0.91483 1.00235 1.20440 0.96532 0.89301 0.98699 0.88758 1.22353 0.94094 0.94955 1.03302 1.21098 0.96141 0.94878 0.99952 1.20685 0.96314 0.94055 0.98400 1.20616 0.98078 0.95095 0.99077 1.21028 0.93309 0.99686 0.99989 1.21043 0.98826 0.93827 1.00240 1.20639 0.97093 0.96246 0.98272 1.20603 0.94003 0.96098 0.98279 1.23666 0.99206 1.01047 0.81011 1.21039 0.92474 0.89408 0.90146 0.91916 1.42708 1.55637 1.31066 1.07740 1.20058 1.28209 1.12176 0.86426 0.91715 1.25754 0.96779 0.95449 1.05843 1.70899 1.45632 1.28397 1.13576 0.83265 0.75990 0.75303 0.74558 1.21025 1.22213 1.22214 0.92188 0.92985 0.93020 0.92339 0.93303 0.91108 0.90486 0.91505 0.88856 0.88836 0.91226 0.89561 0.90797 0.90248 0.86415 0.86050 0.85916 0.86187 0.90734 0.91144 0.78894 0.93395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.24 37.16 0.31 -1.53 16 2 C -0.09 -1.39 1.03 -153.11 -0.16 -1.55 16 3 C -0.13 -2.07 7.11 37.16 0.26 -1.81 16 4 C 0.12 1.77 6.15 -2.41 -0.01 1.76 16 5 N -0.62 -9.57 3.32 -169.17 -0.56 -10.13 16 6 C 0.53 8.06 7.63 -10.99 -0.08 7.98 16 7 O -0.55 -9.59 15.18 5.55 0.08 -9.51 16 8 C -0.13 -1.58 4.08 -27.89 -0.11 -1.69 16 9 C -0.03 -0.37 2.49 -90.73 -0.23 -0.59 16 10 H 0.09 1.18 7.94 -51.93 -0.41 0.77 16 11 C -0.11 -1.22 5.68 -25.32 -0.14 -1.36 16 12 C -0.08 -0.80 6.77 -26.85 -0.18 -0.98 16 13 C -0.09 -1.02 6.14 -104.14 -0.64 -1.66 16 14 C -0.11 -1.07 10.04 -39.53 -0.40 -1.47 16 15 C -0.12 -1.12 10.05 -39.63 -0.40 -1.52 16 16 C -0.12 -1.17 10.05 -39.63 -0.40 -1.57 16 17 C -0.10 -1.11 9.72 -39.59 -0.38 -1.50 16 18 C -0.09 -1.02 5.61 -104.19 -0.58 -1.60 16 19 C 0.08 1.27 6.64 -2.31 -0.02 1.26 16 20 C 0.18 3.35 3.33 -66.53 -0.22 3.13 16 21 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 22 N -0.73 -16.60 4.60 -52.07 -0.24 -16.84 16 23 C -0.34 -8.85 9.96 -15.06 -0.15 -9.00 16 24 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 25 C -0.04 -1.11 5.50 -17.43 -0.10 -1.20 16 26 N -0.94 -27.69 13.70 55.49 0.76 -26.93 16 27 Si 1.08 24.83 29.92 -169.99 -5.09 19.75 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 29 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 30 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.97 6.95 -51.93 -0.36 0.61 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.26 7.74 -51.93 -0.40 0.86 16 37 H 0.08 1.16 7.60 -51.93 -0.39 0.76 16 38 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 39 H 0.09 1.06 7.76 -51.93 -0.40 0.66 16 40 H 0.09 1.13 7.62 -51.93 -0.40 0.73 16 41 H 0.07 0.79 7.86 -51.93 -0.41 0.39 16 42 H 0.09 1.03 7.64 -51.93 -0.40 0.63 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 47 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 48 H 0.12 1.14 7.77 -52.49 -0.41 0.73 16 49 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 50 H 0.07 1.11 7.14 -51.93 -0.37 0.74 16 51 H 0.37 8.75 3.88 -40.82 -0.16 8.59 16 52 H 0.25 7.35 6.77 -40.82 -0.28 7.07 16 LS Contribution 405.33 15.07 6.11 6.11 Total: -1.00 -30.56 405.33 -11.19 -41.75 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -8.62 Total: 10.71 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -3.64 Total: -14.91 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.04 Total: -53.91 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.09 Total: 19.75 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.56 -11.19 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996433421.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.534 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds