Wall clock time and date at job start Wed Apr 1 2020 02:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 110.38674 * 2 1 4 4 C 1.54387 * 110.34010 * 237.77312 * 2 1 3 5 5 N 1.48145 * 104.61355 * 264.99193 * 4 2 1 6 6 C 1.34781 * 127.84037 * 140.42206 * 5 4 2 7 7 O 1.21281 * 119.99656 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00304 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.47069 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.27473 * 52.92477 * 9 8 6 11 11 C 1.54353 * 110.30222 * 174.99781 * 9 8 6 12 12 C 1.54346 * 102.38815 * 92.57710 * 11 9 8 13 13 C 1.51366 * 105.17515 * 26.34465 * 12 11 9 14 14 C 1.38497 * 130.39535 * 162.81080 * 13 12 11 15 15 C 1.38098 * 120.21740 * 180.02562 * 14 13 12 16 16 C 1.38257 * 119.93649 * 359.97438 * 15 14 13 17 17 C 1.38097 * 119.93121 * 0.02562 * 16 15 14 18 18 C 1.38214 * 109.75782 * 342.81309 * 13 12 11 19 19 C 1.48314 * 104.39325 * 320.47469 * 5 4 2 20 20 C 1.54282 * 110.34305 * 122.23169 * 2 1 3 21 21 H 1.09000 * 110.34069 * 359.89302 * 20 2 1 22 22 N 1.46499 * 110.34035 * 237.74306 * 20 2 1 23 23 C 1.36939 * 119.99547 * 156.47674 * 22 20 2 24 24 H 1.07993 * 120.00716 * 359.97438 * 23 22 20 25 25 C 1.38817 * 119.99459 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00154 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99635 * 179.97438 * 25 23 22 28 28 H 1.48506 * 109.47297 * 269.99668 * 27 25 23 29 29 H 1.48503 * 109.47261 * 149.99848 * 27 25 23 30 30 H 1.48500 * 109.47454 * 29.99841 * 27 25 23 31 31 H 1.09001 * 109.47117 * 297.76766 * 1 2 3 32 32 H 1.08997 * 109.47272 * 57.76969 * 1 2 3 33 33 H 1.09005 * 109.47124 * 177.76693 * 1 2 3 34 34 H 1.08993 * 109.47057 * 182.23322 * 3 2 1 35 35 H 1.09000 * 109.47019 * 302.23383 * 3 2 1 36 36 H 1.08999 * 109.47072 * 62.22793 * 3 2 1 37 37 H 1.08993 * 110.41159 * 23.77685 * 4 2 1 38 38 H 1.09003 * 110.40569 * 146.21443 * 4 2 1 39 39 H 1.09006 * 109.47221 * 299.99646 * 8 6 5 40 40 H 1.08995 * 109.47356 * 59.99610 * 8 6 5 41 41 H 1.08995 * 110.81944 * 210.79505 * 11 9 8 42 42 H 1.08988 * 110.82056 * 334.35247 * 11 9 8 43 43 H 1.09004 * 110.30652 * 145.27308 * 12 11 9 44 44 H 1.09005 * 110.29946 * 267.42396 * 12 11 9 45 45 H 1.08007 * 119.89033 * 0.02562 * 14 13 12 46 46 H 1.08006 * 120.03462 * 180.02562 * 15 14 13 47 47 H 1.07997 * 120.03333 * 179.97438 * 16 15 14 48 48 H 1.08006 * 119.89190 * 179.97438 * 17 16 15 49 49 H 1.08999 * 110.38848 * 280.73206 * 19 5 4 50 50 H 1.09009 * 110.50656 * 158.24855 * 19 5 4 51 51 H 0.96998 * 120.00185 * 336.47057 * 22 20 2 52 52 H 0.96993 * 120.00007 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4342 0.0000 4 6 2.0667 -0.7720 -1.2246 5 7 2.3139 -2.1437 -0.7227 6 6 2.0775 -3.3105 -1.3546 7 8 1.6064 -3.3102 -2.4722 8 6 2.3984 -4.6154 -0.6726 9 6 2.0380 -5.7777 -1.6000 10 1 2.5101 -5.6446 -2.5734 11 6 2.4740 -7.1187 -0.9722 12 6 1.2017 -7.5606 -0.2184 13 6 0.0551 -6.9059 -0.9586 14 6 -1.3014 -7.1846 -0.9391 15 6 -2.1745 -6.4427 -1.7102 16 6 -1.6938 -5.4180 -2.5042 17 6 -0.3416 -5.1387 -2.5250 18 6 0.5356 -5.8816 -1.7524 19 6 2.8796 -1.9437 0.6336 20 6 2.0664 -0.7715 1.2237 21 1 1.2398 -1.1489 1.8257 22 7 2.9308 0.0924 2.0315 23 6 3.1248 -0.1821 3.3590 24 1 2.6402 -1.0351 3.8106 25 6 3.9443 0.6362 4.1244 26 7 4.5353 1.6755 3.5740 27 14 4.2083 0.2622 5.9354 28 1 3.1759 0.9625 6.7411 29 1 5.5571 0.7289 6.3457 30 1 4.1018 -1.2019 6.1592 31 1 -0.3633 0.4788 0.9093 32 1 -0.3634 0.5481 -0.8693 33 1 -0.3634 -1.0269 -0.0400 34 1 3.1521 1.4170 -0.0400 35 1 1.6758 1.9657 -0.8693 36 1 1.7407 1.9415 0.9093 37 1 1.3223 -0.7869 -2.0206 38 1 2.9949 -0.3240 -1.5793 39 1 3.4630 -4.6523 -0.4413 40 1 1.8233 -4.6943 0.2499 41 1 2.7369 -7.8409 -1.7451 42 1 3.3029 -6.9711 -0.2801 43 1 1.1014 -8.6456 -0.2491 44 1 1.2335 -7.2120 0.8139 45 1 -1.6777 -7.9846 -0.3187 46 1 -3.2318 -6.6623 -1.6924 47 1 -2.3751 -4.8372 -3.1082 48 1 0.0332 -4.3383 -3.1458 49 1 3.9352 -1.6797 0.5697 50 1 2.7472 -2.8407 1.2387 51 1 3.3658 0.8587 1.6261 52 1 4.3979 1.8699 2.6337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996433422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:23 Heat of formation + Delta-G solvation = 3.343001 kcal Electronic energy + Delta-G solvation = -30833.713074 eV Core-core repulsion = 26990.893220 eV Total energy + Delta-G solvation = -3842.819854 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.66269 -39.71669 -38.00181 -36.03148 -34.39877 -33.30871 -31.91769 -30.75139 -30.06329 -28.88257 -27.57390 -26.97501 -26.65155 -24.78904 -23.69390 -22.67741 -21.92630 -20.94118 -20.33290 -19.04078 -18.49899 -17.52253 -16.89442 -16.36655 -16.06529 -15.55715 -15.12976 -15.06512 -14.88652 -14.56460 -14.34990 -14.00689 -13.71696 -13.48316 -13.12896 -13.08099 -12.86514 -12.75669 -12.70261 -12.44970 -12.24238 -12.06027 -11.82043 -11.72181 -11.63368 -11.30898 -11.18082 -11.14239 -10.96461 -10.92219 -10.84407 -10.58717 -10.51267 -10.30541 -10.08556 -10.05199 -9.61292 -9.24712 -9.05550 -8.76040 -8.54768 -8.40937 -7.15164 -6.19287 -3.20983 1.34297 1.44430 2.81525 3.16278 3.46921 3.50699 3.64806 3.77021 4.27770 4.40030 4.58076 4.64650 4.72835 4.90332 4.98493 5.01560 5.07106 5.09400 5.11151 5.15771 5.33797 5.38676 5.45016 5.46322 5.52553 5.56917 5.60447 5.64114 5.70124 5.74624 5.80051 5.82876 5.86262 5.90318 5.93618 5.97214 6.06016 6.10461 6.15722 6.19315 6.21163 6.25424 6.34618 6.41125 6.46178 6.51413 6.59527 6.67528 6.74901 6.83838 7.05373 7.72726 7.82969 8.37904 8.66560 9.11552 9.97901 10.12127 11.28438 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.003021 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.483439 B = 9266.941988 C =10200.974202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.118 3.882 5 N -0.619 5.619 6 C 0.533 3.467 7 O -0.550 6.550 8 C -0.125 4.125 9 C -0.035 4.035 10 H 0.088 0.912 11 C -0.117 4.117 12 C -0.082 4.082 13 C -0.101 4.101 14 C -0.118 4.118 15 C -0.122 4.122 16 C -0.131 4.131 17 C -0.088 4.088 18 C -0.085 4.085 19 C 0.077 3.923 20 C 0.182 3.818 21 H 0.062 0.938 22 N -0.727 5.727 23 C -0.338 4.338 24 H 0.065 0.935 25 C -0.041 4.041 26 N -0.941 5.941 27 Si 1.081 2.919 28 H -0.295 1.295 29 H -0.288 1.288 30 H -0.294 1.294 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.142 0.858 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.374 0.626 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.176 -15.232 -10.832 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 C -0.189 4.189 4 C -0.005 4.005 5 N -0.352 5.352 6 C 0.323 3.677 7 O -0.430 6.430 8 C -0.165 4.165 9 C -0.053 4.053 10 H 0.106 0.894 11 C -0.155 4.155 12 C -0.119 4.119 13 C -0.101 4.101 14 C -0.136 4.136 15 C -0.140 4.140 16 C -0.149 4.149 17 C -0.106 4.106 18 C -0.085 4.085 19 C -0.049 4.049 20 C 0.069 3.931 21 H 0.080 0.920 22 N -0.372 5.372 23 C -0.468 4.468 24 H 0.083 0.917 25 C -0.239 4.239 26 N -0.586 5.586 27 Si 0.912 3.088 28 H -0.223 1.223 29 H -0.214 1.214 30 H -0.221 1.221 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.133 0.867 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.160 0.840 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.211 0.789 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.740 -14.991 -9.934 19.579 hybrid contribution -0.717 -0.276 -1.327 1.533 sum -8.456 -15.268 -11.261 20.771 Atomic orbital electron populations 1.21773 0.94017 1.01303 1.01579 1.21756 0.95889 0.96038 0.95378 1.21691 1.00842 0.94503 1.01845 1.22380 1.00337 0.81269 0.96513 1.49084 1.62471 1.05242 1.18425 1.20184 0.77623 0.84193 0.85703 1.90545 1.45621 1.87144 1.19650 1.21649 1.03427 0.91556 0.99887 1.20424 0.92072 0.93503 0.99347 0.89422 1.22383 0.97358 0.96021 0.99724 1.21053 0.91790 1.00078 0.98990 1.20633 0.94025 0.97401 0.97997 1.20530 0.92092 1.00559 1.00414 1.21012 0.99198 0.96367 0.97392 1.21109 0.95558 0.98189 1.00027 1.21219 0.92272 0.98816 0.98287 1.20402 0.95105 0.95892 0.97081 1.23645 0.99162 1.00991 0.81056 1.21035 0.92460 0.89420 0.90152 0.91973 1.42713 1.55639 1.31077 1.07741 1.20089 1.28089 1.12220 0.86432 0.91687 1.25757 0.96772 0.95490 1.05844 1.70865 1.45650 1.28469 1.13587 0.83215 0.76467 0.74671 0.74445 1.22280 1.21378 1.22108 0.92218 0.93013 0.93038 0.92342 0.93322 0.91130 0.90525 0.91535 0.88566 0.88914 0.90662 0.90183 0.90860 0.90216 0.86683 0.86352 0.86328 0.84048 0.90739 0.91233 0.78899 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.24 37.16 0.31 -1.57 16 2 C -0.09 -1.40 1.03 -153.11 -0.16 -1.56 16 3 C -0.13 -2.08 7.11 37.16 0.26 -1.82 16 4 C 0.12 1.79 6.14 -2.41 -0.01 1.78 16 5 N -0.62 -9.59 3.32 -169.17 -0.56 -10.15 16 6 C 0.53 8.08 7.69 -10.99 -0.08 8.00 16 7 O -0.55 -9.33 12.66 5.56 0.07 -9.26 16 8 C -0.13 -1.52 4.07 -27.89 -0.11 -1.64 16 9 C -0.03 -0.40 2.50 -90.73 -0.23 -0.63 16 10 H 0.09 1.07 7.91 -51.93 -0.41 0.66 16 11 C -0.12 -1.04 6.60 -25.32 -0.17 -1.21 16 12 C -0.08 -0.76 6.76 -26.85 -0.18 -0.94 16 13 C -0.10 -1.18 6.14 -104.21 -0.64 -1.81 16 14 C -0.12 -1.31 10.04 -39.54 -0.40 -1.70 16 15 C -0.12 -1.34 10.05 -39.63 -0.40 -1.74 16 16 C -0.13 -1.59 10.05 -39.63 -0.40 -1.98 16 17 C -0.09 -1.22 9.06 -39.54 -0.36 -1.58 16 18 C -0.08 -1.10 5.16 -104.20 -0.54 -1.64 16 19 C 0.08 1.29 6.64 -2.32 -0.02 1.27 16 20 C 0.18 3.38 3.33 -66.53 -0.22 3.16 16 21 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 22 N -0.73 -16.64 4.60 -52.07 -0.24 -16.88 16 23 C -0.34 -8.84 9.96 -15.06 -0.15 -8.99 16 24 H 0.07 1.69 7.83 -52.49 -0.41 1.27 16 25 C -0.04 -1.12 5.50 -17.43 -0.10 -1.21 16 26 N -0.94 -27.70 13.70 55.49 0.76 -26.94 16 27 Si 1.08 24.86 29.92 -169.99 -5.09 19.78 16 28 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.97 6.95 -51.93 -0.36 0.61 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.26 7.74 -51.93 -0.40 0.86 16 37 H 0.08 1.16 7.60 -51.93 -0.39 0.76 16 38 H 0.07 1.00 7.83 -51.93 -0.41 0.59 16 39 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 40 H 0.09 1.13 7.94 -51.93 -0.41 0.71 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.61 7.86 -51.94 -0.41 0.20 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 48 H 0.14 2.15 5.71 -52.48 -0.30 1.85 16 49 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 50 H 0.07 1.09 7.31 -51.92 -0.38 0.71 16 51 H 0.37 8.76 3.88 -40.82 -0.16 8.60 16 52 H 0.26 7.36 6.77 -40.82 -0.28 7.08 16 LS Contribution 401.90 15.07 6.06 6.06 Total: -1.00 -30.42 401.90 -11.17 -41.59 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -8.58 Total: 11.63 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -3.59 Total: -15.81 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.04 Total: -53.98 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.07 Total: -9.26 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.78 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.42 -11.17 -41.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996433422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.934 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds