Wall clock time and date at job start Wed Apr 1 2020 03:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47663 * 2 1 4 4 C 1.38257 * 120.00201 * 264.98654 * 3 2 1 5 5 C 1.38215 * 119.99744 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.00318 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99902 * 359.80793 * 6 5 4 8 8 C 1.38214 * 119.99873 * 84.99803 * 3 2 1 9 9 C 1.50702 * 119.99535 * 359.97438 * 8 3 2 10 10 H 1.08995 * 115.56580 * 334.30879 * 9 8 3 11 11 C 1.53008 * 117.49437 * 188.61787 * 9 8 3 12 12 C 1.52999 * 60.00096 * 252.51129 * 11 9 8 13 13 H 1.08996 * 117.49637 * 107.51068 * 12 11 9 14 14 C 1.50697 * 117.50063 * 252.51099 * 12 11 9 15 15 O 1.21285 * 119.99710 * 68.60856 * 14 12 11 16 16 N 1.34777 * 120.00249 * 248.60948 * 14 12 11 17 17 C 1.46917 * 120.63381 * 179.97438 * 16 14 12 18 18 C 1.53190 * 108.77632 * 233.63188 * 17 16 14 19 19 C 1.53043 * 109.31411 * 305.36138 * 18 17 16 20 20 N 1.46499 * 109.46353 * 181.38606 * 19 18 17 21 21 C 1.36935 * 119.99938 * 155.00360 * 20 19 18 22 22 H 1.07999 * 120.00083 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99632 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99535 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 0.27829 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71949 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72145 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72253 * 25 23 21 29 29 C 1.53045 * 109.53404 * 61.36567 * 19 18 17 30 30 C 1.46924 * 120.62590 * 0.02562 * 16 14 12 31 31 H 1.09003 * 109.47119 * 59.99580 * 1 2 3 32 32 H 1.08997 * 109.47359 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46859 * 300.00014 * 1 2 3 34 34 H 1.09002 * 109.46859 * 239.99986 * 2 1 3 35 35 H 1.09003 * 109.47119 * 120.00420 * 2 1 3 36 36 H 1.08000 * 120.00240 * 359.97438 * 4 3 2 37 37 H 1.08006 * 119.99507 * 180.02562 * 5 4 3 38 38 H 1.08000 * 120.00162 * 180.02562 * 6 5 4 39 39 H 1.08006 * 120.00305 * 180.23422 * 7 6 5 40 40 H 1.09000 * 117.49682 * 145.02353 * 11 9 8 41 41 H 1.09002 * 117.51532 * 359.97438 * 11 9 8 42 42 H 1.09002 * 109.58686 * 113.84442 * 17 16 14 43 43 H 1.09006 * 109.58764 * 353.42000 * 17 16 14 44 44 H 1.09003 * 109.49806 * 185.41291 * 18 17 16 45 45 H 1.09003 * 109.52692 * 65.33293 * 18 17 16 46 46 H 1.08999 * 109.45978 * 301.36370 * 19 18 17 47 47 H 0.97004 * 119.99469 * 335.00428 * 20 19 18 48 48 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.49880 * 58.58900 * 29 19 18 50 50 H 1.08995 * 109.49755 * 178.68353 * 29 19 18 51 51 H 1.08997 * 109.58870 * 246.15285 * 30 16 14 52 52 H 1.09004 * 109.58952 * 6.58886 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3616 2.0376 -1.1927 5 6 2.8219 3.3409 -1.1927 6 6 2.9528 4.0278 -0.0001 7 6 2.6195 3.4126 1.1919 8 6 2.1645 2.1070 1.1924 9 6 1.8054 1.4346 2.4924 10 1 1.0734 0.6303 2.4195 11 6 1.7787 2.3021 3.7526 12 6 2.9089 1.2925 3.5427 13 1 3.8947 1.6853 3.2936 14 6 2.9007 0.0511 4.3970 15 8 2.0401 -0.7886 4.2381 16 7 3.8496 -0.1259 5.3376 17 6 3.8544 -1.3306 6.1786 18 6 3.8834 -0.9047 7.6499 19 6 5.0731 0.0293 7.8831 20 7 5.1233 0.4123 9.2963 21 6 6.3116 0.7920 9.8609 22 1 7.2118 0.8095 9.2644 23 6 6.3590 1.1554 11.1998 24 7 7.5014 1.5198 11.7427 25 14 4.8033 1.1190 12.2331 26 1 4.1302 2.4407 12.1610 27 1 3.8896 0.0692 11.7154 28 1 5.1535 0.8183 13.6446 29 6 4.9159 1.2835 7.0202 30 6 4.8981 0.8827 5.5422 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 2.2591 1.5012 -2.1245 37 1 3.0787 3.8229 -2.1245 38 1 3.3121 5.0462 -0.0001 39 1 2.7180 3.9504 2.1233 40 1 1.0291 2.0684 4.5086 41 1 2.0212 3.3590 3.6416 42 1 4.7371 -1.9294 5.9541 43 1 2.9549 -1.9150 5.9850 44 1 3.9842 -1.7870 8.2821 45 1 2.9582 -0.3841 7.8968 46 1 5.9960 -0.4837 7.6129 47 1 4.3147 0.3969 9.8319 48 1 7.5346 1.7734 12.6784 49 1 3.9809 1.7838 7.2724 50 1 5.7514 1.9588 7.2042 51 1 5.8661 0.4648 5.2657 52 1 4.6872 1.7587 4.9288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996937678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:47 Heat of formation + Delta-G solvation = 2.470247 kcal Electronic energy + Delta-G solvation = -29687.209552 eV Core-core repulsion = 25844.351852 eV Total energy + Delta-G solvation = -3842.857700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.63771 -40.55795 -38.97556 -37.27052 -36.24243 -35.07951 -33.93201 -32.30661 -31.55693 -31.32636 -30.20466 -27.09582 -25.52007 -24.85431 -24.64352 -24.31962 -23.31688 -21.98175 -21.68268 -21.01732 -20.03573 -19.36619 -18.62874 -17.38023 -17.21734 -16.71458 -16.37638 -16.25526 -15.94534 -15.83389 -15.28523 -15.18775 -14.94803 -14.79114 -14.71555 -14.52805 -14.39235 -14.13312 -14.04021 -13.61847 -13.45929 -13.23697 -13.12022 -12.94469 -12.73533 -12.67358 -12.64905 -12.30041 -12.20643 -12.06964 -12.02901 -11.83646 -11.79205 -11.73244 -11.47406 -11.35113 -11.34185 -11.01139 -10.78079 -9.70723 -9.65125 -9.37962 -9.30404 -8.01288 -5.34211 0.39142 0.51776 1.38207 1.39923 1.44722 1.47553 1.94052 2.48653 2.67488 3.08520 3.29974 3.35893 3.53680 3.66530 3.75794 3.87747 3.91638 3.94682 4.04054 4.06100 4.14497 4.16884 4.26803 4.33574 4.34335 4.38272 4.49512 4.58275 4.63809 4.65925 4.70492 4.73386 4.74913 4.80164 4.82288 4.91699 4.97730 5.02269 5.04799 5.09152 5.13520 5.18189 5.26044 5.27450 5.37585 5.46448 5.60011 5.64771 5.66743 5.78844 5.80050 6.15189 6.22895 6.38497 7.08669 7.11416 7.85369 8.03603 9.19998 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.002217 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.279521 B =12627.695072 C =13334.100871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.087 4.087 3 C -0.084 4.084 4 C -0.126 4.126 5 C -0.125 4.125 6 C -0.129 4.129 7 C -0.123 4.123 8 C -0.064 4.064 9 C -0.083 4.083 10 H 0.111 0.889 11 C -0.133 4.133 12 C -0.180 4.180 13 H 0.143 0.857 14 C 0.542 3.458 15 O -0.582 6.582 16 N -0.603 5.603 17 C 0.121 3.879 18 C -0.130 4.130 19 C 0.175 3.825 20 N -0.753 5.753 21 C -0.223 4.223 22 H 0.061 0.939 23 C -0.065 4.065 24 N -0.983 5.983 25 Si 0.951 3.049 26 H -0.280 1.280 27 H -0.255 1.255 28 H -0.299 1.299 29 C -0.141 4.141 30 C 0.115 3.885 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.096 0.904 41 H 0.132 0.868 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.363 0.637 48 H 0.256 0.744 49 H 0.056 0.944 50 H 0.064 0.936 51 H 0.080 0.920 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.287 2.248 -28.587 31.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.084 4.084 4 C -0.143 4.143 5 C -0.143 4.143 6 C -0.147 4.147 7 C -0.141 4.141 8 C -0.064 4.064 9 C -0.102 4.102 10 H 0.129 0.871 11 C -0.170 4.170 12 C -0.201 4.201 13 H 0.160 0.840 14 C 0.332 3.668 15 O -0.463 6.463 16 N -0.334 5.334 17 C -0.002 4.002 18 C -0.169 4.169 19 C 0.067 3.933 20 N -0.395 5.395 21 C -0.354 4.354 22 H 0.079 0.921 23 C -0.256 4.256 24 N -0.634 5.634 25 Si 0.779 3.221 26 H -0.207 1.207 27 H -0.179 1.179 28 H -0.226 1.226 29 C -0.181 4.181 30 C -0.008 4.008 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.079 0.921 36 H 0.153 0.847 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.115 0.885 41 H 0.149 0.851 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.196 0.804 48 H 0.065 0.935 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.099 0.901 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.491 1.818 -28.633 31.704 hybrid contribution -0.338 -0.009 1.450 1.489 sum -13.830 1.809 -27.182 30.552 Atomic orbital electron populations 1.21711 0.94262 1.02105 1.01906 1.20555 0.96653 0.92502 1.02764 1.19884 0.99149 0.96486 0.92883 1.21258 0.99792 0.95703 0.97596 1.21451 0.99145 0.94649 0.99056 1.21406 1.00051 1.00919 0.92287 1.21278 0.99242 0.94133 0.99449 1.19021 1.00607 0.94350 0.92438 1.21010 0.99709 1.01619 0.87819 0.87100 1.23228 0.97903 0.97346 0.98496 1.22355 0.98161 0.97216 1.02340 0.83986 1.20054 0.79938 0.87052 0.79804 1.90645 1.38685 1.46393 1.70582 1.48137 1.28514 1.21838 1.34918 1.21532 1.03415 0.86831 0.88455 1.22102 0.98337 1.00150 0.96334 1.20402 0.96672 0.93405 0.82775 1.42845 1.06741 1.81818 1.08134 1.19023 0.87843 1.34927 0.93607 0.92055 1.25450 0.99564 1.02302 0.98295 1.69876 1.26405 1.53963 1.13164 0.85466 0.80246 0.78470 0.77916 1.20685 1.17930 1.22556 1.22409 1.01895 0.99342 0.94488 1.21889 0.90623 0.91896 0.96365 0.91967 0.91874 0.93383 0.90144 0.92140 0.84683 0.84148 0.84160 0.84486 0.88507 0.85051 0.90069 0.89601 0.90343 0.92283 0.93343 0.80427 0.93477 0.92526 0.91749 0.90141 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.74 71.98 0.70 -1.46 16 2 C -0.09 -1.44 5.38 29.85 0.16 -1.28 16 3 C -0.08 -1.45 5.13 -19.87 -0.10 -1.55 16 4 C -0.13 -1.83 9.68 22.27 0.22 -1.61 16 5 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 6 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 7 C -0.12 -1.84 9.30 22.27 0.21 -1.63 16 8 C -0.06 -1.13 5.61 -19.87 -0.11 -1.25 16 9 C -0.08 -1.59 4.66 -11.53 -0.05 -1.65 16 10 H 0.11 2.53 5.47 -2.39 -0.01 2.52 16 11 C -0.13 -2.22 9.56 30.60 0.29 -1.93 16 12 C -0.18 -3.50 4.60 -11.54 -0.05 -3.56 16 13 H 0.14 2.28 6.82 -2.39 -0.02 2.26 16 14 C 0.54 14.11 7.48 87.66 0.66 14.76 16 15 O -0.58 -18.96 15.67 -3.04 -0.05 -19.01 16 16 N -0.60 -14.95 2.97 -819.01 -2.43 -17.38 16 17 C 0.12 3.10 6.43 86.36 0.56 3.65 16 18 C -0.13 -3.80 5.55 30.67 0.17 -3.63 16 19 C 0.18 6.12 2.73 45.02 0.12 6.24 16 20 N -0.75 -33.68 4.92 -322.80 -1.59 -35.27 16 21 C -0.22 -12.25 10.41 84.03 0.87 -11.38 16 22 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 23 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 24 N -0.98 -62.17 13.97 21.65 0.30 -61.86 16 25 Si 0.95 45.14 27.74 68.60 1.90 47.05 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 27 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 29 C -0.14 -4.20 5.66 30.66 0.17 -4.03 16 30 C 0.11 2.55 6.29 86.35 0.54 3.10 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.82 7.17 -2.39 -0.02 0.80 16 34 H 0.08 1.11 8.05 -2.39 -0.02 1.09 16 35 H 0.06 1.22 6.94 -2.39 -0.02 1.20 16 36 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 38 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 39 H 0.14 1.58 6.02 -2.91 -0.02 1.56 16 40 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.13 1.56 6.17 -2.39 -0.01 1.55 16 42 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.09 2.32 7.01 -2.38 -0.02 2.30 16 44 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 47 H 0.36 15.90 5.66 -92.71 -0.52 15.38 16 48 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 49 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.11 1.86 5.67 -2.39 -0.01 1.84 16 Total: -1.00 -70.74 406.69 3.73 -67.00 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: 0.33 Total: 32.82 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 5.27 Total: -13.35 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -3.72 Total: -114.51 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.05 Total: -19.01 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.05 kcal Total: -70.74 3.73 -67.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996937678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.474 kcal (2) G-P(sol) polarization free energy of solvation -70.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds