Wall clock time and date at job start Wed Apr 1 2020 03:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.47011 * 2 1 4 4 C 1.38258 * 119.99575 * 265.01852 * 3 2 1 5 5 C 1.38215 * 119.99419 * 180.02562 * 4 3 2 6 6 C 1.38251 * 120.00430 * 359.97438 * 5 4 3 7 7 C 1.38210 * 119.99869 * 359.74285 * 6 5 4 8 8 C 1.38202 * 120.00067 * 85.00051 * 3 2 1 9 9 C 1.50701 * 120.00094 * 359.97438 * 8 3 2 10 10 H 1.08994 * 115.55243 * 334.32612 * 9 8 3 11 11 C 1.53005 * 117.49899 * 188.62009 * 9 8 3 12 12 C 1.52991 * 60.00097 * 252.51317 * 11 9 8 13 13 H 1.09002 * 117.51833 * 107.48444 * 12 11 9 14 14 C 1.50701 * 117.49880 * 252.51250 * 12 11 9 15 15 O 1.21278 * 120.00171 * 68.62069 * 14 12 11 16 16 N 1.34781 * 120.00040 * 248.62377 * 14 12 11 17 17 C 1.46506 * 119.99780 * 359.97438 * 16 14 12 18 18 C 1.46496 * 120.00053 * 179.97438 * 16 14 12 19 19 C 1.53773 * 113.61849 * 239.99827 * 18 16 14 20 20 C 1.53776 * 87.08681 * 220.02316 * 19 18 16 21 21 N 1.46496 * 113.62100 * 139.98000 * 20 19 18 22 22 C 1.36934 * 120.00548 * 154.99786 * 21 20 19 23 23 H 1.08004 * 119.99288 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00389 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00257 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 C 1.53785 * 113.61148 * 142.49932 * 18 16 14 31 31 H 1.09000 * 109.47057 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46944 * 300.00113 * 1 2 3 33 33 H 1.09000 * 109.46838 * 59.99888 * 1 2 3 34 34 H 1.09001 * 109.46944 * 239.99887 * 2 1 3 35 35 H 1.09000 * 109.46838 * 120.00112 * 2 1 3 36 36 H 1.07991 * 120.00381 * 359.97438 * 4 3 2 37 37 H 1.08004 * 119.99668 * 179.97438 * 5 4 3 38 38 H 1.08002 * 119.99910 * 179.97438 * 6 5 4 39 39 H 1.08001 * 120.00074 * 180.27988 * 7 6 5 40 40 H 1.08997 * 117.49719 * 145.01703 * 11 9 8 41 41 H 1.08996 * 117.49981 * 0.02562 * 11 9 8 42 42 H 1.08997 * 109.46704 * 269.99696 * 17 16 14 43 43 H 1.09001 * 109.47054 * 29.99929 * 17 16 14 44 44 H 1.09003 * 109.46612 * 150.00054 * 17 16 14 45 45 H 1.09000 * 112.90910 * 11.25524 * 18 16 14 46 46 H 1.08998 * 113.61309 * 105.46724 * 19 18 16 47 47 H 1.09002 * 113.69148 * 334.58551 * 19 18 16 48 48 H 1.09005 * 113.61155 * 270.80405 * 20 19 18 49 49 H 0.96999 * 119.99694 * 335.00310 * 21 20 19 50 50 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 51 51 H 1.09004 * 113.61417 * 25.43944 * 30 18 16 52 52 H 1.09000 * 113.61689 * 254.52717 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3608 2.0378 -1.1929 5 6 2.8220 3.3408 -1.1928 6 6 2.9544 4.0272 -0.0001 7 6 2.6205 3.4123 1.1918 8 6 2.1644 2.1071 1.1923 9 6 1.8054 1.4348 2.4924 10 1 1.0738 0.6302 2.4193 11 6 1.7786 2.3023 3.7525 12 6 2.9090 1.2929 3.5426 13 1 3.8948 1.6855 3.2930 14 6 2.9010 0.0516 4.3970 15 8 2.0408 -0.7884 4.2381 16 7 3.8498 -0.1252 5.3378 17 6 4.8893 0.8893 5.5294 18 6 3.8417 -1.3316 6.1687 19 6 3.7081 -1.0427 7.6732 20 6 4.7358 -2.1638 7.8999 21 7 5.7141 -1.8603 8.9473 22 6 6.3396 -2.8785 9.6159 23 1 6.1120 -3.9055 9.3707 24 6 7.2661 -2.5909 10.6087 25 7 7.8677 -3.5697 11.2510 26 14 7.6601 -0.8148 11.0323 27 1 8.7880 -0.3433 10.1891 28 1 6.4660 0.0310 10.7796 29 1 8.0397 -0.7200 12.4648 30 6 5.2463 -1.8760 6.4781 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.2578 1.5015 -2.1245 37 1 3.0789 3.8227 -2.1246 38 1 3.3152 5.0452 -0.0001 39 1 2.7197 3.9500 2.1232 40 1 1.0291 2.0686 4.5085 41 1 2.0202 3.3593 3.6411 42 1 5.7409 0.6624 4.8881 43 1 4.4912 1.8706 5.2712 44 1 5.2090 0.8895 6.5715 45 1 3.1490 -2.0914 5.8068 46 1 2.7202 -1.2680 8.0750 47 1 4.0677 -0.0554 7.9631 48 1 4.2874 -3.1509 8.0127 49 1 5.9186 -0.9380 9.1673 50 1 8.5154 -3.3687 11.9445 51 1 6.0271 -1.1163 6.4400 52 1 5.5003 -2.7742 5.9152 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999318829.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:18 Heat of formation + Delta-G solvation = 47.106915 kcal Electronic energy + Delta-G solvation = -29332.979854 eV Core-core repulsion = 25492.057746 eV Total energy + Delta-G solvation = -3840.922108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.77790 -39.86189 -38.38296 -36.42417 -34.90006 -34.48962 -33.10810 -30.93989 -30.53450 -29.63550 -27.09409 -25.80926 -25.22750 -24.39180 -24.10120 -23.64617 -21.66150 -21.34797 -20.41877 -19.41935 -18.85392 -17.75403 -17.40711 -16.68441 -16.57926 -15.80445 -15.42891 -15.32594 -14.82015 -14.70426 -14.39332 -14.16479 -14.03422 -13.79751 -13.51217 -13.30761 -13.14404 -12.83444 -12.74095 -12.54389 -12.28708 -12.20257 -12.12427 -12.04183 -11.94369 -11.77284 -11.69647 -11.19267 -11.12643 -11.03666 -10.85661 -10.71316 -10.69766 -10.51922 -10.19419 -10.12534 -9.76605 -9.59604 -9.09434 -8.95236 -8.78000 -8.52744 -7.32129 -5.81812 -3.17989 0.96998 1.07025 2.40157 2.92394 3.31981 3.32591 3.34374 3.41022 3.75916 4.14498 4.38940 4.47621 4.52596 4.53657 4.55100 4.68919 4.73261 4.87590 4.89664 4.99427 5.04228 5.05784 5.10720 5.19036 5.20909 5.23105 5.29235 5.35633 5.36182 5.45041 5.55568 5.57959 5.60986 5.69300 5.69696 5.71164 5.72942 5.76468 5.86569 5.99846 6.03931 6.12530 6.18629 6.19655 6.21368 6.30895 6.38876 6.45956 6.67032 6.68623 6.89391 7.43100 7.94208 8.15155 8.37636 9.14715 9.87076 10.06586 11.36291 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.002038 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.599231 B =13734.061168 C =14366.061485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.121 4.121 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.050 4.050 9 C -0.086 4.086 10 H 0.130 0.870 11 C -0.145 4.145 12 C -0.176 4.176 13 H 0.124 0.876 14 C 0.542 3.458 15 O -0.543 6.543 16 N -0.595 5.595 17 C 0.075 3.925 18 C 0.117 3.883 19 C -0.166 4.166 20 C 0.176 3.824 21 N -0.734 5.734 22 C -0.248 4.248 23 H 0.092 0.908 24 C 0.005 3.995 25 N -0.932 5.932 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.277 1.277 29 H -0.290 1.290 30 C -0.174 4.174 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.362 0.638 50 H 0.260 0.740 51 H 0.082 0.918 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.922 16.633 -25.073 32.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.139 4.139 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.050 4.050 9 C -0.104 4.104 10 H 0.147 0.853 11 C -0.182 4.182 12 C -0.197 4.197 13 H 0.142 0.858 14 C 0.330 3.670 15 O -0.421 6.421 16 N -0.326 5.326 17 C -0.068 4.068 18 C 0.014 3.986 19 C -0.206 4.206 20 C 0.064 3.936 21 N -0.373 5.373 22 C -0.378 4.378 23 H 0.110 0.890 24 C -0.191 4.191 25 N -0.579 5.579 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.204 1.204 29 H -0.217 1.217 30 C -0.216 4.216 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.134 0.866 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.106 0.894 49 H 0.195 0.805 50 H 0.070 0.930 51 H 0.100 0.900 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.260 15.933 -25.005 32.480 hybrid contribution 0.709 1.434 0.389 1.646 sum -12.552 17.367 -24.617 32.637 Atomic orbital electron populations 1.21740 0.94553 1.01965 1.02042 1.20609 0.96392 0.92500 1.03346 1.19740 0.98456 0.96268 0.92355 1.21035 0.99885 0.95182 0.97411 1.21134 0.99888 0.94821 0.98089 1.21091 1.00588 0.99951 0.92507 1.21053 0.99603 0.94485 0.98372 1.18974 0.99562 0.93712 0.92780 1.21131 1.00457 1.01742 0.87086 0.85254 1.23124 0.99183 0.96354 0.99569 1.22387 0.96875 0.98071 1.02332 0.85784 1.19602 0.81025 0.86630 0.79739 1.90671 1.37324 1.44824 1.69304 1.47753 1.28007 1.21429 1.35391 1.21793 0.90966 0.90878 1.03154 1.22597 0.99758 0.86710 0.89518 1.23947 1.00930 1.00960 0.94751 1.21322 0.89124 0.96421 0.86767 1.42699 1.47630 1.05203 1.41813 1.19141 1.16749 0.88902 1.13032 0.89030 1.24703 0.99103 0.96798 0.98523 1.69704 1.30953 1.30026 1.27206 0.86551 0.78094 0.86092 0.77786 1.21062 1.20355 1.21670 1.24285 0.95237 1.00980 1.01078 0.92191 0.92350 0.92770 0.91126 0.90181 0.86078 0.86180 0.86117 0.85886 0.87698 0.87471 0.92435 0.91089 0.90345 0.86616 0.91421 0.90320 0.89409 0.80527 0.92998 0.89996 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.74 37.16 0.36 -0.76 16 2 C -0.09 -0.77 5.38 -27.88 -0.15 -0.92 16 3 C -0.07 -0.61 5.13 -104.63 -0.54 -1.15 16 4 C -0.12 -0.93 9.68 -39.58 -0.38 -1.32 16 5 C -0.12 -0.89 10.05 -39.59 -0.40 -1.29 16 6 C -0.12 -0.91 10.05 -39.59 -0.40 -1.30 16 7 C -0.12 -0.93 9.30 -39.58 -0.37 -1.30 16 8 C -0.05 -0.46 5.61 -104.63 -0.59 -1.04 16 9 C -0.09 -0.82 4.66 -91.77 -0.43 -1.25 16 10 H 0.13 1.41 5.47 -51.93 -0.28 1.13 16 11 C -0.15 -1.19 9.56 -26.73 -0.26 -1.45 16 12 C -0.18 -1.73 4.43 -91.78 -0.41 -2.14 16 13 H 0.12 1.07 7.26 -51.93 -0.38 0.69 16 14 C 0.54 7.23 7.46 -10.98 -0.08 7.15 16 15 O -0.54 -8.98 15.74 5.56 0.09 -8.89 16 16 N -0.59 -7.69 3.08 -173.00 -0.53 -8.22 16 17 C 0.08 0.77 8.61 59.85 0.52 1.29 16 18 C 0.12 1.73 4.20 -67.12 -0.28 1.44 16 19 C -0.17 -2.57 7.36 -25.93 -0.19 -2.76 16 20 C 0.18 3.26 4.48 -67.12 -0.30 2.96 16 21 N -0.73 -16.80 5.20 -52.64 -0.27 -17.07 16 22 C -0.25 -6.87 10.45 -15.06 -0.16 -7.03 16 23 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 24 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -28.93 13.97 55.49 0.78 -28.15 16 26 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 30 C -0.17 -2.80 7.31 -25.91 -0.19 -2.99 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.48 7.17 -51.93 -0.37 0.11 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.08 0.80 6.94 -51.93 -0.36 0.43 16 36 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 37 H 0.12 0.64 8.06 -52.48 -0.42 0.21 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 39 H 0.12 0.77 6.02 -52.49 -0.32 0.46 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.11 0.66 6.17 -51.93 -0.32 0.34 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.56 6.64 -51.93 -0.34 0.22 16 44 H 0.08 0.85 6.34 -51.93 -0.33 0.52 16 45 H 0.12 1.81 7.24 -51.93 -0.38 1.43 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.08 1.19 6.90 -51.93 -0.36 0.83 16 48 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 49 H 0.36 8.07 5.78 -40.82 -0.24 7.83 16 50 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 51 H 0.08 1.31 6.72 -51.93 -0.35 0.96 16 52 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 409.64 15.07 6.17 6.17 Total: -1.00 -32.73 409.64 -11.08 -43.81 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.26 Total: 9.29 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: -4.33 Total: -13.81 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.03 Total: -53.45 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.73 -11.08 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999318829.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.917 kcal (2) G-P(sol) polarization free energy of solvation -32.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds