Wall clock time and date at job start Wed Apr 1 2020 03:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47033 * 2 1 4 4 C 1.38255 * 119.99951 * 265.23106 * 3 2 1 5 5 C 1.38218 * 119.99904 * 180.25701 * 4 3 2 6 6 C 1.38253 * 120.00003 * 359.78444 * 5 4 3 7 7 C 1.38212 * 120.00170 * 359.96146 * 6 5 4 8 8 C 1.38210 * 120.00127 * 84.99655 * 3 2 1 9 9 C 1.50699 * 120.00146 * 0.02562 * 8 3 2 10 10 H 1.09008 * 115.55832 * 334.03348 * 9 8 3 11 11 C 1.52999 * 117.50138 * 188.35022 * 9 8 3 12 12 C 1.53002 * 117.50619 * 119.72321 * 9 8 3 13 13 H 1.09001 * 117.51133 * 0.02562 * 12 9 8 14 14 C 1.50691 * 117.50362 * 214.98299 * 12 9 8 15 15 O 1.21285 * 119.99682 * 359.97438 * 14 12 9 16 16 N 1.34773 * 120.00401 * 179.97438 * 14 12 9 17 17 C 1.46926 * 120.62904 * 359.97438 * 16 14 12 18 18 C 1.53192 * 108.77820 * 233.58715 * 17 16 14 19 19 C 1.53033 * 109.31270 * 305.36633 * 18 17 16 20 20 C 1.53041 * 109.53898 * 61.36218 * 19 18 17 21 21 H 1.09002 * 109.50075 * 58.58639 * 20 19 18 22 22 N 1.46507 * 109.49540 * 178.68430 * 20 19 18 23 23 C 1.36929 * 119.99830 * 274.83432 * 22 20 19 24 24 H 1.08002 * 120.00596 * 0.02562 * 23 22 20 25 25 C 1.38817 * 119.99858 * 180.02562 * 23 22 20 26 26 N 1.31614 * 119.99927 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99828 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.46836 * 90.00582 * 27 25 23 29 29 H 1.48504 * 109.47259 * 210.00261 * 27 25 23 30 30 H 1.48494 * 109.47399 * 330.00284 * 27 25 23 31 31 C 1.46927 * 120.63516 * 179.97438 * 16 14 12 32 32 H 1.09002 * 109.47017 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47168 * 300.00143 * 1 2 3 34 34 H 1.08997 * 109.47242 * 60.00441 * 1 2 3 35 35 H 1.08995 * 109.47290 * 239.99503 * 2 1 3 36 36 H 1.09005 * 109.46666 * 119.99726 * 2 1 3 37 37 H 1.08003 * 120.00274 * 0.02562 * 4 3 2 38 38 H 1.07997 * 120.00033 * 179.76615 * 5 4 3 39 39 H 1.07997 * 120.00113 * 179.97438 * 6 5 4 40 40 H 1.08002 * 120.00109 * 180.02562 * 7 6 5 41 41 H 1.09008 * 117.50326 * 145.01629 * 11 9 8 42 42 H 1.09001 * 117.51842 * 359.97438 * 11 9 8 43 43 H 1.09006 * 109.58406 * 353.37631 * 17 16 14 44 44 H 1.09002 * 109.59019 * 113.79619 * 17 16 14 45 45 H 1.09000 * 109.49511 * 65.31256 * 18 17 16 46 46 H 1.08995 * 109.49883 * 185.40976 * 18 17 16 47 47 H 1.09002 * 109.45686 * 301.34174 * 19 18 17 48 48 H 1.09004 * 109.45285 * 181.37911 * 19 18 17 49 49 H 0.96999 * 119.99807 * 94.84725 * 22 20 19 50 50 H 0.97005 * 119.99912 * 179.97438 * 26 25 23 51 51 H 1.08997 * 109.58859 * 246.20187 * 31 16 14 52 52 H 1.09001 * 109.58530 * 6.48424 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3566 2.0394 -1.1932 5 6 2.8223 3.3407 -1.1927 6 6 2.9597 4.0253 0.0005 7 6 2.6306 3.4088 1.1929 8 6 2.1642 2.1072 1.1924 9 6 1.8063 1.4346 2.4926 10 1 1.0715 0.6326 2.4205 11 6 1.7855 2.3006 3.7537 12 6 2.9120 1.2875 3.5399 13 1 3.8984 1.6776 3.2888 14 6 2.9019 0.0452 4.3927 15 8 2.0381 -0.7915 4.2352 16 7 3.8526 -0.1361 5.3306 17 6 4.9058 0.8682 5.5328 18 6 6.2701 0.1773 5.4419 19 6 6.3143 -0.9881 6.4328 20 6 5.2314 -2.0078 6.0724 21 1 5.3914 -2.3640 5.0547 22 7 5.2950 -3.1379 7.0025 23 6 6.1592 -4.1730 6.7641 24 1 6.7943 -4.1561 5.8906 25 6 6.2191 -5.2441 7.6451 26 7 5.4449 -5.2650 8.7092 27 14 7.3986 -6.6557 7.3202 28 1 8.7034 -6.3698 7.9692 29 1 6.8334 -7.9111 7.8769 30 1 7.5967 -6.8085 5.8565 31 6 3.8557 -1.3419 6.1702 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 2.2495 1.5045 -2.1253 38 1 3.0792 3.8226 -2.1245 39 1 3.3240 5.0420 0.0009 40 1 2.7375 3.9437 2.1250 41 1 1.0371 2.0685 4.5114 42 1 2.0311 3.3568 3.6434 43 1 4.8324 1.6350 4.7616 44 1 4.7920 1.3241 6.5164 45 1 6.4202 -0.1996 4.4302 46 1 7.0566 0.8916 5.6850 47 1 6.1394 -0.6139 7.4415 48 1 7.2928 -1.4662 6.3874 49 1 4.7248 -3.1531 7.7870 50 1 5.4865 -6.0136 9.3246 51 1 3.6561 -1.0665 7.2058 52 1 3.0878 -2.0322 5.8211 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000031926.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:06 Heat of formation + Delta-G solvation = 16.479528 kcal Electronic energy + Delta-G solvation = -29810.550276 eV Core-core repulsion = 25968.300065 eV Total energy + Delta-G solvation = -3842.250211 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.65973 -39.64959 -37.66465 -36.24343 -34.48902 -34.38385 -32.17734 -31.28016 -30.80372 -29.55656 -28.48489 -25.80646 -24.47606 -24.12910 -23.97966 -22.94982 -22.04035 -21.28019 -20.45729 -19.82462 -18.72515 -17.62489 -17.18630 -16.62250 -16.12670 -15.48158 -15.38797 -15.08972 -14.61050 -14.29606 -14.08596 -14.05901 -14.02042 -13.71136 -13.51567 -13.46806 -13.40381 -12.93259 -12.70974 -12.55818 -12.42895 -12.22878 -12.03454 -11.95686 -11.60860 -11.19102 -11.09278 -10.95824 -10.93787 -10.89927 -10.74898 -10.65896 -10.57052 -10.41152 -10.34258 -10.08152 -9.75622 -9.58014 -9.01709 -8.91524 -8.69999 -8.39178 -6.99221 -5.77976 -3.07510 1.05027 1.14789 2.56798 3.05854 3.40518 3.43261 3.48695 3.50326 3.85725 4.24837 4.48445 4.55801 4.58697 4.61508 4.62750 4.76244 4.81299 4.91493 4.97859 5.05275 5.17311 5.20723 5.26519 5.28385 5.30733 5.38708 5.44125 5.52894 5.56463 5.66547 5.69893 5.71090 5.77192 5.77932 5.81298 5.83031 5.86190 5.96154 6.05195 6.10063 6.15575 6.24838 6.26727 6.29916 6.39227 6.47854 6.54849 6.71117 6.76419 6.87874 7.04392 7.58601 7.69101 8.31873 8.40213 9.51195 10.06433 10.41638 11.44527 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015433 B = 0.002330 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.812482 B =12014.917350 C =12509.838276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.067 4.067 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.049 4.049 9 C -0.087 4.087 10 H 0.130 0.870 11 C -0.145 4.145 12 C -0.175 4.175 13 H 0.125 0.875 14 C 0.541 3.459 15 O -0.542 6.542 16 N -0.600 5.600 17 C 0.108 3.892 18 C -0.134 4.134 19 C -0.137 4.137 20 C 0.169 3.831 21 H 0.049 0.951 22 N -0.721 5.721 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.907 3.093 28 H -0.290 1.290 29 H -0.291 1.291 30 H -0.282 1.282 31 C 0.106 3.894 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.384 0.616 50 H 0.256 0.744 51 H 0.065 0.935 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.496 22.341 -16.704 28.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.067 4.067 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.105 4.105 10 H 0.148 0.852 11 C -0.182 4.182 12 C -0.196 4.196 13 H 0.143 0.857 14 C 0.329 3.671 15 O -0.419 6.419 16 N -0.332 5.332 17 C -0.015 4.015 18 C -0.173 4.173 19 C -0.178 4.178 20 C 0.058 3.942 21 H 0.068 0.932 22 N -0.362 5.362 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 C -0.016 4.016 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.083 0.917 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.844 21.720 -16.827 28.315 hybrid contribution 0.810 -0.700 0.216 1.092 sum -6.034 21.020 -16.611 27.462 Atomic orbital electron populations 1.21736 0.94572 1.02001 1.01964 1.20617 0.96382 0.92469 1.03471 1.19755 0.98365 0.96242 0.92352 1.21037 0.99890 0.95171 0.97416 1.21124 0.99948 0.94856 0.98063 1.21077 1.00724 0.99894 0.92507 1.21044 0.99627 0.94535 0.98333 1.18984 0.99432 0.93722 0.92806 1.21138 1.00539 1.01738 0.87081 0.85233 1.23121 0.99318 0.96249 0.99560 1.22381 0.96754 0.98040 1.02380 0.85678 1.19527 0.81223 0.86595 0.79740 1.90695 1.37322 1.44955 1.68942 1.48011 1.27420 1.21797 1.35989 1.21800 0.87400 0.90512 1.01795 1.21948 0.95707 0.98684 1.00996 1.22281 1.01927 0.95641 0.97920 1.20463 0.90909 0.88048 0.94799 0.93249 1.42308 1.47767 1.19200 1.26927 1.19201 1.14207 0.97138 1.06399 0.91179 1.24750 0.99944 0.98772 0.97390 1.69660 1.41715 1.32366 1.14250 0.86187 0.80403 0.82092 0.77492 1.21719 1.21734 1.20742 1.22002 1.00163 0.85713 0.93750 0.92162 0.92361 0.92823 0.91110 0.90061 0.86097 0.86230 0.86168 0.85892 0.87722 0.87520 0.90158 0.91351 0.91881 0.91341 0.92467 0.91575 0.78197 0.93461 0.91704 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.74 37.16 0.36 -0.93 16 2 C -0.09 -0.90 5.38 -27.88 -0.15 -1.05 16 3 C -0.07 -0.67 5.13 -104.63 -0.54 -1.21 16 4 C -0.12 -1.03 9.68 -39.58 -0.38 -1.41 16 5 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 6 C -0.12 -0.98 10.05 -39.59 -0.40 -1.38 16 7 C -0.12 -1.01 9.30 -39.58 -0.37 -1.37 16 8 C -0.05 -0.49 5.61 -104.62 -0.59 -1.08 16 9 C -0.09 -0.92 4.65 -91.77 -0.43 -1.34 16 10 H 0.13 1.58 5.48 -51.92 -0.28 1.30 16 11 C -0.15 -1.30 9.56 -26.73 -0.26 -1.56 16 12 C -0.17 -1.92 4.76 -91.77 -0.44 -2.36 16 13 H 0.13 1.20 6.56 -51.93 -0.34 0.86 16 14 C 0.54 8.19 7.48 -10.99 -0.08 8.11 16 15 O -0.54 -10.21 15.67 5.55 0.09 -10.12 16 16 N -0.60 -8.89 2.97 -172.79 -0.51 -9.40 16 17 C 0.11 1.24 6.35 -3.71 -0.02 1.22 16 18 C -0.13 -1.71 6.08 -26.61 -0.16 -1.87 16 19 C -0.14 -2.34 5.47 -26.69 -0.15 -2.48 16 20 C 0.17 3.38 2.92 -67.83 -0.20 3.18 16 21 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 22 N -0.72 -18.07 5.12 -53.32 -0.27 -18.35 16 23 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 24 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 27 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 31 C 0.11 1.91 5.90 -3.73 -0.02 1.89 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.54 7.17 -51.93 -0.37 0.17 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.61 8.05 -51.93 -0.42 0.20 16 36 H 0.08 0.94 6.95 -51.93 -0.36 0.58 16 37 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.12 0.83 6.02 -52.49 -0.32 0.51 16 41 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 42 H 0.11 0.71 6.18 -51.93 -0.32 0.39 16 43 H 0.08 0.72 5.51 -51.93 -0.29 0.43 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.38 10.19 7.80 -40.82 -0.32 9.88 16 50 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.09 1.88 7.00 -51.93 -0.36 1.52 16 LS Contribution 409.63 15.07 6.17 6.17 Total: -1.00 -32.37 409.63 -11.70 -44.07 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -8.42 Total: 9.82 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -4.46 Total: -12.23 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.06 Total: -55.19 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.37 -11.70 -44.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000031926.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.550 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds