Wall clock time and date at job start Wed Apr 1 2020 03:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47049 * 2 1 4 4 C 1.38256 * 119.99730 * 264.99762 * 3 2 1 5 5 C 1.38205 * 120.00143 * 179.97438 * 4 3 2 6 6 C 1.38265 * 120.00044 * 359.96152 * 5 4 3 7 7 C 1.38211 * 119.99661 * 0.02562 * 6 5 4 8 8 C 1.38211 * 120.00152 * 84.72434 * 3 2 1 9 9 C 1.50698 * 119.99834 * 359.97438 * 8 3 2 10 10 H 1.08993 * 115.55433 * 334.41213 * 9 8 3 11 11 C 1.53004 * 117.49490 * 188.74526 * 9 8 3 12 12 C 1.53005 * 117.49901 * 120.08972 * 9 8 3 13 13 H 1.09000 * 117.49593 * 359.97438 * 12 9 8 14 14 C 1.50692 * 117.50013 * 215.00234 * 12 9 8 15 15 O 1.21282 * 119.99828 * 359.97438 * 14 12 9 16 16 N 1.34769 * 120.00081 * 180.02562 * 14 12 9 17 17 C 1.46924 * 120.63407 * 359.97438 * 16 14 12 18 18 C 1.53188 * 108.77709 * 126.36819 * 17 16 14 19 19 C 1.53045 * 109.31218 * 54.64175 * 18 17 16 20 20 C 1.53041 * 109.53350 * 298.62974 * 19 18 17 21 21 H 1.09001 * 109.49950 * 301.41963 * 20 19 18 22 22 N 1.46501 * 109.49735 * 181.34960 * 20 19 18 23 23 C 1.36942 * 119.99769 * 84.99967 * 22 20 19 24 24 H 1.08001 * 120.00085 * 0.02562 * 23 22 20 25 25 C 1.38811 * 119.99447 * 180.02562 * 23 22 20 26 26 N 1.31617 * 120.00671 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99684 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47044 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47212 * 119.99930 * 27 25 23 30 30 H 1.48495 * 109.47058 * 240.00030 * 27 25 23 31 31 C 1.46931 * 120.63315 * 179.71793 * 16 14 12 32 32 H 1.09007 * 109.47360 * 299.99872 * 1 2 3 33 33 H 1.08997 * 109.47379 * 60.00219 * 1 2 3 34 34 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 35 35 H 1.08998 * 109.47472 * 239.99873 * 2 1 3 36 36 H 1.09005 * 109.47189 * 119.99482 * 2 1 3 37 37 H 1.07999 * 120.00073 * 359.97438 * 4 3 2 38 38 H 1.07996 * 120.00462 * 179.97438 * 5 4 3 39 39 H 1.08001 * 119.99976 * 179.97438 * 6 5 4 40 40 H 1.07999 * 119.99922 * 179.97438 * 7 6 5 41 41 H 1.08996 * 117.49921 * 0.02562 * 11 9 8 42 42 H 1.09006 * 117.49546 * 145.01953 * 11 9 8 43 43 H 1.09001 * 109.59033 * 246.15902 * 17 16 14 44 44 H 1.09005 * 109.58378 * 6.58330 * 17 16 14 45 45 H 1.09005 * 109.49775 * 174.58963 * 18 17 16 46 46 H 1.09002 * 109.50097 * 294.68803 * 18 17 16 47 47 H 1.08998 * 109.46236 * 58.65178 * 19 18 17 48 48 H 1.08999 * 109.45769 * 178.61327 * 19 18 17 49 49 H 0.97000 * 120.00320 * 265.00432 * 22 20 19 50 50 H 0.96993 * 120.00086 * 180.02562 * 26 25 23 51 51 H 1.09009 * 109.58265 * 353.41911 * 31 16 14 52 52 H 1.09001 * 109.58533 * 113.83969 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3611 2.0378 -1.1928 5 6 2.8213 3.3410 -1.1930 6 6 2.9521 4.0281 -0.0003 7 6 2.6231 3.4114 1.1921 8 6 2.1589 2.1091 1.1919 9 6 1.7940 1.4389 2.4914 10 1 1.0638 0.6333 2.4161 11 6 1.7587 2.3091 3.7494 12 6 2.8923 1.3005 3.5476 13 1 3.8789 1.6938 3.3023 14 6 2.8818 0.0606 4.4040 15 8 2.0235 -0.7808 4.2423 16 7 3.8255 -0.1127 5.3504 17 6 4.8715 0.8979 5.5586 18 6 4.8795 1.3020 7.0362 19 6 5.0342 0.0498 7.9025 20 6 3.8476 -0.8869 7.6644 21 1 2.9199 -0.3672 7.9043 22 7 3.9799 -2.0703 8.5178 23 6 3.5258 -2.0374 9.8093 24 1 3.0696 -1.1392 10.1986 25 6 3.6517 -3.1586 10.6180 26 7 4.2071 -4.2534 10.1434 27 14 3.0315 -3.1140 12.3795 28 1 2.4527 -1.7769 12.6668 29 1 1.9888 -4.1552 12.5637 30 1 4.1604 -3.3741 13.3084 31 6 3.8248 -1.3133 6.1973 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 2.2584 1.5013 -2.1245 38 1 3.0786 3.8227 -2.1246 39 1 3.3121 5.0463 -0.0004 40 1 2.7256 3.9480 2.1238 41 1 1.9989 3.3663 3.6370 42 1 1.0054 2.0755 4.5018 43 1 5.8416 0.4808 5.2885 44 1 4.6628 1.7721 4.9419 45 1 5.7128 1.9792 7.2237 46 1 3.9421 1.8010 7.2821 47 1 5.9596 -0.4621 7.6389 48 1 5.0649 0.3370 8.9535 49 1 4.3893 -2.8772 8.1681 50 1 4.2947 -5.0369 10.7084 51 1 2.9257 -1.8978 6.0019 52 1 4.7080 -1.9141 5.9803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000031929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:11 Heat of formation + Delta-G solvation = 15.951939 kcal Electronic energy + Delta-G solvation = -29723.988466 eV Core-core repulsion = 25881.715377 eV Total energy + Delta-G solvation = -3842.273089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -40.66383 -39.66166 -37.66875 -36.24459 -34.49788 -34.40292 -32.18072 -31.28849 -30.81432 -29.57404 -28.49349 -25.80762 -24.48853 -24.13101 -23.99512 -22.93678 -22.04782 -21.29706 -20.48146 -19.85866 -18.64962 -17.65681 -17.19120 -16.62848 -16.13400 -15.46784 -15.26569 -15.15115 -14.73439 -14.36241 -14.09767 -14.04490 -13.95378 -13.70619 -13.55990 -13.45886 -13.40681 -12.95766 -12.72805 -12.55430 -12.42279 -12.22758 -12.05435 -11.95650 -11.61988 -11.20110 -11.10838 -10.96482 -10.94057 -10.91512 -10.75554 -10.63497 -10.59203 -10.41383 -10.34559 -10.06014 -9.76256 -9.58575 -9.03409 -8.92451 -8.71186 -8.39576 -6.99567 -5.78504 -3.08123 1.03473 1.13003 2.56794 3.04204 3.40979 3.42595 3.48326 3.50417 3.86316 4.24312 4.48142 4.55026 4.57870 4.61097 4.63423 4.75056 4.81252 4.93304 4.95409 5.03182 5.16832 5.18549 5.25590 5.27320 5.30297 5.36218 5.45726 5.52501 5.57223 5.65498 5.68718 5.72370 5.76429 5.77022 5.79065 5.83197 5.85439 5.94460 6.05058 6.07936 6.15468 6.24662 6.25165 6.28692 6.39040 6.46065 6.54726 6.71069 6.74716 6.87769 7.04131 7.58601 7.69027 8.31735 8.39703 9.50683 10.05974 10.41042 11.44051 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.020725 B = 0.002177 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.703454 B =12855.805509 C =13550.808979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.068 4.068 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.117 4.117 8 C -0.049 4.049 9 C -0.088 4.088 10 H 0.130 0.870 11 C -0.144 4.144 12 C -0.174 4.174 13 H 0.124 0.876 14 C 0.542 3.458 15 O -0.541 6.541 16 N -0.600 5.600 17 C 0.108 3.892 18 C -0.133 4.133 19 C -0.137 4.137 20 C 0.169 3.831 21 H 0.049 0.951 22 N -0.721 5.721 23 C -0.238 4.238 24 H 0.071 0.929 25 C -0.013 4.013 26 N -0.931 5.931 27 Si 0.907 3.093 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 C 0.106 3.894 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.067 0.933 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.066 0.934 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.092 0.908 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 18.021 -22.954 29.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.068 4.068 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.106 4.106 10 H 0.148 0.852 11 C -0.181 4.181 12 C -0.195 4.195 13 H 0.142 0.858 14 C 0.329 3.671 15 O -0.419 6.419 16 N -0.332 5.332 17 C -0.015 4.015 18 C -0.172 4.172 19 C -0.178 4.178 20 C 0.058 3.942 21 H 0.067 0.933 22 N -0.362 5.362 23 C -0.369 4.369 24 H 0.089 0.911 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.738 3.262 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.219 1.219 31 C -0.016 4.016 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.085 0.915 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.111 0.889 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.664 17.568 -22.849 28.871 hybrid contribution 0.149 -0.184 0.970 0.999 sum -1.515 17.385 -21.879 27.986 Atomic orbital electron populations 1.21741 0.94545 1.02004 1.02038 1.20610 0.96415 0.92487 1.03347 1.19752 0.98433 0.96263 0.92361 1.21026 0.99944 0.95181 0.97387 1.21122 1.00021 0.94819 0.98060 1.21087 1.00700 0.99883 0.92503 1.21056 0.99582 0.94525 0.98364 1.18990 0.99340 0.93724 0.92824 1.21147 1.00601 1.01831 0.87024 0.85234 1.23141 0.99212 0.96249 0.99538 1.22370 0.96736 0.98169 1.02250 0.85783 1.19536 0.80895 0.86600 0.80040 1.90694 1.37166 1.44668 1.69370 1.48002 1.28405 1.22095 1.34736 1.21792 0.90927 0.91228 0.97583 1.21930 1.01985 0.98980 0.94259 1.22284 1.00703 0.95181 0.99643 1.20390 0.95922 0.89556 0.88359 0.93284 1.42320 1.72418 1.10957 1.10533 1.19245 1.31961 0.97778 0.87883 0.91113 1.24755 1.01598 0.96039 0.98514 1.69667 1.49483 1.02841 1.35963 0.86117 0.78004 0.77260 0.84802 1.20557 1.21816 1.21871 1.21926 1.03271 0.85968 0.90459 0.92296 0.92809 0.92176 0.91169 0.90119 0.86124 0.86238 0.86155 0.85855 0.87493 0.87610 0.91479 0.90133 0.91373 0.91822 0.92487 0.91564 0.78197 0.93504 0.88926 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.73 37.16 0.36 -0.89 16 2 C -0.09 -0.84 5.38 -27.88 -0.15 -0.99 16 3 C -0.07 -0.65 5.13 -104.62 -0.54 -1.19 16 4 C -0.12 -0.99 9.68 -39.59 -0.38 -1.37 16 5 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 6 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 7 C -0.12 -0.99 9.29 -39.58 -0.37 -1.36 16 8 C -0.05 -0.48 5.61 -104.63 -0.59 -1.06 16 9 C -0.09 -0.93 4.65 -91.77 -0.43 -1.35 16 10 H 0.13 1.58 5.44 -51.93 -0.28 1.30 16 11 C -0.14 -1.35 9.57 -26.69 -0.26 -1.61 16 12 C -0.17 -1.91 4.59 -91.74 -0.42 -2.33 16 13 H 0.12 1.15 6.82 -51.93 -0.35 0.79 16 14 C 0.54 8.19 7.48 -10.99 -0.08 8.10 16 15 O -0.54 -10.19 15.67 5.56 0.09 -10.11 16 16 N -0.60 -8.89 2.98 -173.01 -0.52 -9.40 16 17 C 0.11 1.24 6.30 -3.71 -0.02 1.21 16 18 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 19 C -0.14 -2.33 5.47 -26.69 -0.15 -2.48 16 20 C 0.17 3.36 2.91 -68.01 -0.20 3.16 16 21 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 22 N -0.72 -18.03 5.12 -53.50 -0.27 -18.30 16 23 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 24 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -28.13 13.06 55.49 0.72 -27.40 16 27 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 30 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 31 C 0.11 1.91 5.88 -3.91 -0.02 1.89 16 32 H 0.06 0.54 7.14 -51.93 -0.37 0.17 16 33 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.56 8.05 -51.93 -0.42 0.15 16 36 H 0.08 0.88 6.96 -51.93 -0.36 0.51 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.12 0.84 6.03 -52.49 -0.32 0.52 16 41 H 0.11 0.75 6.18 -51.93 -0.32 0.43 16 42 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.08 0.72 5.67 -51.93 -0.29 0.42 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 49 H 0.38 10.19 7.80 -40.82 -0.32 9.87 16 50 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.09 1.88 7.01 -51.92 -0.36 1.52 16 52 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 409.77 15.07 6.18 6.18 Total: -1.00 -32.30 409.77 -11.71 -44.01 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -8.44 Total: 9.60 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -4.44 Total: -11.99 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.06 Total: -55.11 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.30 -11.71 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000031929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.958 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds