Wall clock time and date at job start Wed Apr 1 2020 02:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34778 * 119.99992 * 2 1 4 4 O 1.21277 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00137 * 0.02562 * 3 2 1 6 6 H 1.09001 * 115.56506 * 44.15317 * 5 3 2 7 7 C 1.53002 * 117.49486 * 258.46925 * 5 3 2 8 8 C 1.53000 * 117.49891 * 189.84624 * 5 3 2 9 9 C 1.52999 * 117.51841 * 214.96601 * 8 5 3 10 10 C 1.50700 * 117.49904 * 359.97438 * 8 5 3 11 11 C 1.38235 * 119.99922 * 76.29435 * 10 8 5 12 12 C 1.38241 * 119.99638 * 180.21628 * 11 10 8 13 13 C 1.38229 * 120.00088 * 359.52800 * 12 11 10 14 14 C 1.38239 * 120.00076 * 0.28611 * 13 12 11 15 15 C 1.38230 * 119.99989 * 359.94883 * 14 13 12 16 16 C 1.46492 * 119.99817 * 180.02562 * 2 1 3 17 17 C 1.53042 * 109.45959 * 60.03000 * 16 2 1 18 18 C 1.53192 * 109.31307 * 178.60209 * 17 16 2 19 19 N 1.46928 * 108.76728 * 54.64869 * 18 17 16 20 20 C 1.36942 * 120.62796 * 126.36541 * 19 18 17 21 21 H 1.08003 * 120.00083 * 326.17616 * 20 19 18 22 22 C 1.38809 * 119.99553 * 146.18270 * 20 19 18 23 23 N 1.31614 * 120.00233 * 347.59752 * 22 20 19 24 24 Si 1.86804 * 119.99718 * 167.60474 * 22 20 19 25 25 H 1.48507 * 109.47190 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47463 * 119.99631 * 24 22 20 27 27 H 1.48497 * 109.47097 * 239.99562 * 24 22 20 28 28 C 1.46927 * 118.73932 * 306.38787 * 19 18 17 29 29 C 1.53032 * 109.46299 * 299.97065 * 16 2 1 30 30 H 1.08995 * 109.46982 * 89.99333 * 1 2 3 31 31 H 1.08995 * 109.46882 * 209.99789 * 1 2 3 32 32 H 1.09008 * 109.46589 * 329.99667 * 1 2 3 33 33 H 1.09003 * 117.49779 * 145.02173 * 7 5 3 34 34 H 1.08991 * 117.50209 * 359.97438 * 7 5 3 35 35 H 1.09001 * 109.47021 * 180.11979 * 9 8 5 36 36 H 1.08994 * 109.47319 * 300.12146 * 9 8 5 37 37 H 1.09005 * 109.46811 * 60.12338 * 9 8 5 38 38 H 1.08000 * 120.00295 * 0.02562 * 11 10 8 39 39 H 1.08000 * 119.99781 * 179.80926 * 12 11 10 40 40 H 1.08002 * 120.00367 * 180.25779 * 13 12 11 41 41 H 1.07999 * 119.99922 * 179.97438 * 14 13 12 42 42 H 1.08000 * 120.00296 * 180.02562 * 15 14 13 43 43 H 1.09004 * 109.45897 * 179.97438 * 16 2 1 44 44 H 1.09003 * 109.49487 * 298.56199 * 17 16 2 45 45 H 1.08996 * 109.50076 * 58.66342 * 17 16 2 46 46 H 1.08998 * 109.59636 * 294.86195 * 18 17 16 47 47 H 1.09001 * 109.70489 * 174.50220 * 18 17 16 48 48 H 0.97008 * 119.99802 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.58353 * 293.81979 * 28 19 18 50 50 H 1.08996 * 109.70293 * 173.46450 * 28 19 18 51 51 H 1.08999 * 109.50256 * 301.33855 * 29 16 2 52 52 H 1.09006 * 109.49674 * 61.40439 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3855 2.4723 0.0006 6 1 0.5396 2.5268 0.6859 7 6 1.2667 3.2200 -1.3290 8 6 2.1902 3.7527 -0.2315 9 6 1.7462 5.0119 0.5157 10 6 3.6757 3.6123 -0.4426 11 6 4.1621 3.1671 -1.6576 12 6 5.5246 3.0340 -1.8497 13 6 6.4010 3.3555 -0.8302 14 6 5.9147 3.8044 0.3835 15 6 4.5521 3.9328 0.5772 16 6 2.1975 -1.2687 -0.0006 17 6 1.8281 -2.0701 -1.2510 18 6 2.6219 -3.3802 -1.2659 19 7 2.3849 -4.0909 -0.0020 20 6 1.9510 -5.3898 -0.0027 21 1 1.2860 -5.7366 -0.7799 22 6 2.3659 -6.2606 0.9955 23 7 3.3547 -5.9218 1.7952 24 14 1.5207 -7.9135 1.2036 25 1 0.4475 -8.0522 0.1865 26 1 2.5141 -9.0031 1.0273 27 1 0.9283 -7.9989 2.5625 28 6 2.6218 -3.3815 1.2626 29 6 1.8282 -2.0712 1.2490 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 0.3428 3.7664 -1.5184 34 1 1.7339 2.7682 -2.2040 35 1 2.4043 5.8406 0.2542 36 1 0.7223 5.2587 0.2353 37 1 1.7959 4.8334 1.5899 38 1 3.4776 2.9203 -2.4556 39 1 5.9045 2.6832 -2.7978 40 1 7.4657 3.2555 -0.9816 41 1 6.5995 4.0552 1.1801 42 1 4.1722 4.2839 1.5253 43 1 3.2691 -1.0693 -0.0009 44 1 0.7608 -2.2913 -1.2391 45 1 2.0698 -1.4884 -2.1405 46 1 3.6849 -3.1624 -1.3688 47 1 2.2934 -3.9995 -2.1006 48 1 3.6449 -6.5305 2.4926 49 1 3.6848 -3.1638 1.3659 50 1 2.2925 -3.9995 2.0979 51 1 2.0698 -1.4904 2.1391 52 1 0.7608 -2.2920 1.2373 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005727694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:15 Heat of formation + Delta-G solvation = 43.871084 kcal Electronic energy + Delta-G solvation = -30857.171121 eV Core-core repulsion = 27016.108697 eV Total energy + Delta-G solvation = -3841.062425 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -40.68895 -39.07101 -37.59424 -36.54035 -34.98501 -32.46213 -31.01177 -30.57931 -30.12482 -29.62525 -28.69109 -26.77816 -25.47433 -23.94841 -23.16198 -22.26762 -22.15377 -21.58146 -19.82357 -19.02842 -18.67859 -17.30803 -16.69914 -16.61653 -15.78888 -15.34891 -14.88314 -14.80964 -14.65659 -14.25914 -13.97405 -13.72699 -13.58262 -13.46696 -13.35263 -13.07956 -12.96370 -12.78605 -12.56762 -12.52121 -12.30541 -12.28758 -12.08973 -11.91682 -11.44151 -11.10299 -11.07297 -10.96692 -10.80524 -10.73845 -10.56146 -10.30419 -10.23638 -10.14681 -10.08342 -9.76987 -9.62173 -9.41155 -8.71833 -8.51897 -8.29460 -8.21024 -6.58952 -5.78997 -3.28384 1.50867 1.60560 2.69351 3.15731 3.36053 3.43678 3.45776 3.57432 3.99907 4.37235 4.48271 4.48563 4.56993 4.71977 4.88277 5.08549 5.10491 5.18123 5.25217 5.32353 5.38155 5.44060 5.45741 5.46952 5.47500 5.50973 5.56508 5.65910 5.72313 5.75232 5.77852 5.79468 5.91276 5.92305 6.11139 6.15814 6.18169 6.26605 6.38492 6.51870 6.60862 6.62343 6.66349 6.66960 6.74748 6.80757 6.96274 7.01413 7.17810 7.34230 7.60645 7.70916 7.80494 8.45462 8.48981 9.22196 9.83257 10.43951 11.29546 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017433 B = 0.002727 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.739237 B =10264.225097 C =10981.711772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.606 5.606 3 C 0.533 3.467 4 O -0.520 6.520 5 C -0.172 4.172 6 H 0.125 0.875 7 C -0.147 4.147 8 C -0.062 4.062 9 C -0.112 4.112 10 C -0.014 4.014 11 C -0.100 4.100 12 C -0.114 4.114 13 C -0.127 4.127 14 C -0.118 4.118 15 C -0.107 4.107 16 C 0.148 3.852 17 C -0.136 4.136 18 C 0.148 3.852 19 N -0.591 5.591 20 C -0.256 4.256 21 H 0.063 0.937 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.902 3.098 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.289 1.289 28 C 0.178 3.822 29 C -0.145 4.145 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.094 0.906 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.019 0.981 47 H 0.056 0.944 48 H 0.254 0.746 49 H 0.021 0.979 50 H 0.083 0.917 51 H 0.049 0.951 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 23.239 -4.444 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.338 5.338 3 C 0.320 3.680 4 O -0.395 6.395 5 C -0.193 4.193 6 H 0.143 0.857 7 C -0.184 4.184 8 C -0.063 4.063 9 C -0.169 4.169 10 C -0.014 4.014 11 C -0.118 4.118 12 C -0.132 4.132 13 C -0.145 4.145 14 C -0.136 4.136 15 C -0.125 4.125 16 C 0.046 3.954 17 C -0.176 4.176 18 C 0.021 3.979 19 N -0.314 5.314 20 C -0.386 4.386 21 H 0.081 0.919 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.732 3.268 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.216 1.216 28 C 0.052 3.948 29 C -0.185 4.185 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.064 0.936 49 H 0.039 0.961 50 H 0.101 0.899 51 H 0.068 0.932 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.675 23.108 -4.308 23.792 hybrid contribution -0.611 -1.133 0.290 1.320 sum -4.287 21.974 -4.018 22.746 Atomic orbital electron populations 1.21713 0.80374 1.02830 1.01487 1.48082 1.06752 1.06177 1.72826 1.19589 0.87589 0.84160 0.76685 1.90770 1.13227 1.86561 1.48972 1.22476 1.02618 0.91473 1.02706 0.85732 1.23238 1.01267 1.01907 0.91977 1.20229 0.90518 0.93845 1.01705 1.21352 1.01078 0.94716 0.99786 1.18627 0.91527 0.97469 0.93819 1.20791 0.95252 0.99000 0.96732 1.20970 0.93384 0.99947 0.98946 1.21012 0.99257 1.00343 0.93864 1.20983 0.95241 1.00261 0.97140 1.20713 0.93053 1.00830 0.97927 1.21134 0.97263 0.80935 0.96080 1.22343 1.01232 0.97990 0.96018 1.20875 0.95741 0.90893 0.90392 1.44017 1.77893 1.10220 0.99286 1.19168 1.21803 0.85864 1.11773 0.91918 1.25230 0.96261 0.97617 1.00100 1.70011 1.26625 1.36579 1.21193 0.86231 0.78947 0.83983 0.77634 1.20203 1.21620 1.21564 1.20669 0.95313 0.88571 0.90272 1.22560 1.01458 0.98989 0.95534 0.92954 0.90645 0.91705 0.87534 0.88009 0.91473 0.91923 0.91807 0.87051 0.86707 0.86728 0.86661 0.86879 0.88795 0.92243 0.93180 0.96325 0.92545 0.93617 0.96113 0.89888 0.93213 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 9.35 59.85 0.56 1.46 16 2 N -0.61 -9.00 2.76 -173.89 -0.48 -9.48 16 3 C 0.53 8.01 7.37 -10.98 -0.08 7.93 16 4 O -0.52 -9.60 12.53 5.56 0.07 -9.53 16 5 C -0.17 -1.87 4.77 -91.77 -0.44 -2.30 16 6 H 0.12 1.11 6.86 -51.93 -0.36 0.75 16 7 C -0.15 -1.32 9.20 -26.73 -0.25 -1.57 16 8 C -0.06 -0.64 2.50 -155.66 -0.39 -1.03 16 9 C -0.11 -0.86 9.11 37.16 0.34 -0.52 16 10 C -0.01 -0.18 3.22 -104.62 -0.34 -0.52 16 11 C -0.10 -1.31 8.04 -39.58 -0.32 -1.63 16 12 C -0.11 -1.48 10.05 -39.58 -0.40 -1.88 16 13 C -0.13 -1.59 10.05 -39.58 -0.40 -1.99 16 14 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 15 C -0.11 -1.36 9.29 -39.58 -0.37 -1.73 16 16 C 0.15 2.67 2.48 -67.90 -0.17 2.50 16 17 C -0.14 -2.43 5.34 -26.61 -0.14 -2.57 16 18 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 19 N -0.59 -14.93 2.97 -172.32 -0.51 -15.44 16 20 C -0.26 -7.03 9.54 -15.06 -0.14 -7.18 16 21 H 0.06 1.69 7.86 -52.48 -0.41 1.28 16 22 C 0.01 0.20 4.99 -17.43 -0.09 0.11 16 23 N -0.90 -26.34 11.35 55.49 0.63 -25.71 16 24 Si 0.90 21.62 29.57 -169.99 -5.03 16.59 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 28 C 0.18 4.32 5.24 -3.71 -0.02 4.30 16 29 C -0.15 -2.83 5.31 -26.62 -0.14 -2.97 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.91 6.46 -51.93 -0.34 0.57 16 32 H 0.06 0.57 6.17 -51.92 -0.32 0.25 16 33 H 0.11 0.69 8.05 -51.93 -0.42 0.27 16 34 H 0.10 1.00 6.16 -51.93 -0.32 0.68 16 35 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.06 0.38 7.90 -51.93 -0.41 -0.04 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.11 1.34 6.00 -52.49 -0.32 1.03 16 39 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.11 1.20 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 42 H 0.11 1.26 7.72 -52.49 -0.40 0.85 16 43 H 0.09 1.96 6.90 -51.93 -0.36 1.61 16 44 H 0.06 1.05 7.72 -51.93 -0.40 0.64 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.08 2.22 6.37 -51.93 -0.33 1.89 16 51 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 52 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 LS Contribution 401.14 15.07 6.05 6.05 Total: -1.00 -32.25 401.14 -10.97 -43.22 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.50 Total: 2.61 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.20 Total: -8.30 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: -0.36 Total: -50.64 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.07 Total: -9.53 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.25 -10.97 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005727694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.093 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds