Wall clock time and date at job start Wed Apr 1 2020 03:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46818 * 2 1 4 4 C 1.38260 * 119.99959 * 264.97333 * 3 2 1 5 5 C 1.38211 * 119.99949 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.00271 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99552 * 359.81206 * 6 5 4 8 8 C 1.38207 * 120.00080 * 85.00066 * 3 2 1 9 9 C 1.50704 * 120.00165 * 359.97438 * 8 3 2 10 10 H 1.09004 * 115.55680 * 334.31109 * 9 8 3 11 11 C 1.52995 * 117.49853 * 188.62405 * 9 8 3 12 12 C 1.52996 * 117.49767 * 119.99845 * 9 8 3 13 13 H 1.08998 * 117.52201 * 0.02562 * 12 9 8 14 14 C 1.50702 * 117.49855 * 214.97926 * 12 9 8 15 15 O 1.21279 * 119.99643 * 359.97438 * 14 12 9 16 16 N 1.34776 * 120.00329 * 179.97438 * 14 12 9 17 17 C 1.46501 * 120.00276 * 180.02562 * 16 14 12 18 18 H 1.09001 * 109.49519 * 325.06223 * 17 16 14 19 19 C 1.53039 * 109.49679 * 204.99976 * 17 16 14 20 20 C 1.53044 * 109.53646 * 178.68229 * 19 17 16 21 21 C 1.53189 * 109.31349 * 61.36374 * 20 19 17 22 22 N 1.46926 * 108.77454 * 305.36694 * 21 20 19 23 23 C 1.36940 * 120.62842 * 233.58851 * 22 21 20 24 24 H 1.08003 * 120.00249 * 152.05572 * 23 22 21 25 25 C 1.38815 * 120.00013 * 332.04455 * 23 22 21 26 26 N 1.31617 * 120.00138 * 335.35859 * 25 23 22 27 27 Si 1.86800 * 119.99966 * 155.34778 * 25 23 22 28 28 H 1.48498 * 109.47028 * 180.02562 * 27 25 23 29 29 H 1.48498 * 109.47108 * 300.00617 * 27 25 23 30 30 H 1.48495 * 109.47028 * 60.00290 * 27 25 23 31 31 C 1.46923 * 118.74097 * 53.85812 * 22 21 20 32 32 H 1.08994 * 109.47301 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47132 * 300.00162 * 1 2 3 34 34 H 1.09005 * 109.46967 * 59.99910 * 1 2 3 35 35 H 1.08999 * 109.47132 * 239.99838 * 2 1 3 36 36 H 1.08994 * 109.47245 * 119.99687 * 2 1 3 37 37 H 1.07999 * 119.99614 * 359.97438 * 4 3 2 38 38 H 1.07998 * 119.99912 * 179.97438 * 5 4 3 39 39 H 1.07994 * 120.00088 * 179.97438 * 6 5 4 40 40 H 1.08004 * 119.99825 * 180.22732 * 7 6 5 41 41 H 1.09000 * 117.49892 * 145.01993 * 11 9 8 42 42 H 1.08996 * 117.52165 * 359.97438 * 11 9 8 43 43 H 0.97000 * 119.99533 * 0.02562 * 16 14 12 44 44 H 1.09005 * 109.46084 * 58.65978 * 19 17 16 45 45 H 1.08994 * 109.45956 * 298.70069 * 19 17 16 46 46 H 1.09004 * 109.49423 * 301.41100 * 20 19 17 47 47 H 1.08997 * 109.49382 * 181.31667 * 20 19 17 48 48 H 1.08997 * 109.58310 * 185.57933 * 21 20 19 49 49 H 1.09000 * 109.58597 * 65.15139 * 21 20 19 50 50 H 0.97004 * 119.99413 * 354.23471 * 26 25 23 51 51 H 1.09005 * 109.58626 * 65.93043 * 31 22 21 52 52 H 1.09008 * 109.58620 * 186.35134 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0376 -1.1928 5 6 2.8227 3.3406 -1.1927 6 6 2.9543 4.0273 0.0000 7 6 2.6209 3.4122 1.1919 8 6 2.1643 2.1071 1.1923 9 6 1.8054 1.4349 2.4925 10 1 1.0735 0.6304 2.4195 11 6 1.7785 2.3023 3.7525 12 6 2.9090 1.2929 3.5426 13 1 3.8947 1.6860 3.2936 14 6 2.9010 0.0516 4.3970 15 8 2.0404 -0.7881 4.2384 16 7 3.8501 -0.1254 5.3374 17 6 3.8426 -1.3324 6.1677 18 1 2.8133 -1.6315 6.3655 19 6 4.5548 -1.0461 7.4917 20 6 4.5187 -2.2967 8.3731 21 6 5.2558 -3.4374 7.6645 22 7 4.6694 -3.6224 6.3301 23 6 4.2223 -4.8531 5.9291 24 1 3.4254 -4.9283 5.2040 25 6 4.7934 -6.0041 6.4545 26 7 6.0207 -5.9723 6.9289 27 14 3.8199 -7.5980 6.4886 28 1 4.6481 -8.6710 7.0954 29 1 2.5877 -7.4083 7.2954 30 1 3.4498 -7.9817 5.1027 31 6 4.5772 -2.4634 5.4320 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.2593 1.5010 -2.1244 38 1 3.0804 3.8222 -2.1244 39 1 3.3150 5.0453 0.0000 40 1 2.7201 3.9499 2.1234 41 1 1.0290 2.0686 4.5085 42 1 2.0207 3.3592 3.6415 43 1 4.5381 0.5464 5.4645 44 1 4.0522 -0.2258 8.0043 45 1 5.5907 -0.7705 7.2946 46 1 3.4832 -2.5872 8.5502 47 1 5.0055 -2.0849 9.3251 48 1 5.1484 -4.3558 8.2415 49 1 6.3119 -3.1855 7.5677 50 1 6.5558 -5.1686 6.8359 51 1 5.5791 -2.1337 5.1568 52 1 4.0219 -2.7391 4.5354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008341279.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:48 Heat of formation + Delta-G solvation = 16.490963 kcal Electronic energy + Delta-G solvation = -29792.308547 eV Core-core repulsion = 25950.058832 eV Total energy + Delta-G solvation = -3842.249716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.36 seconds Orbital eigenvalues (eV) -40.54130 -39.47234 -37.74785 -36.30633 -34.45461 -34.37210 -32.52099 -30.84885 -30.39984 -29.54250 -28.78194 -25.10606 -24.81655 -24.11226 -23.89808 -22.26993 -21.63473 -21.25655 -20.38453 -19.97698 -19.21260 -17.53609 -17.37474 -16.70391 -15.92497 -15.62346 -15.25346 -14.94173 -14.46971 -14.33785 -14.08762 -14.04475 -13.84666 -13.64813 -13.56684 -13.41286 -13.30047 -12.82976 -12.60916 -12.43467 -12.31744 -12.03470 -12.01732 -11.94474 -11.58854 -11.20384 -11.05635 -11.03280 -10.75697 -10.71942 -10.68729 -10.58803 -10.36411 -10.09061 -10.03925 -9.97143 -9.61203 -9.30895 -9.00268 -8.89057 -8.68427 -8.28670 -6.86600 -6.04103 -3.20983 1.06294 1.16099 2.61434 3.22421 3.45118 3.53823 3.56458 3.74576 3.87692 4.33860 4.51614 4.59026 4.63186 4.64716 4.71560 4.77414 4.94178 5.00267 5.03995 5.20502 5.23462 5.29276 5.30852 5.33395 5.38097 5.41423 5.45841 5.57992 5.61070 5.68561 5.72061 5.79321 5.83959 5.89059 5.95059 5.98270 6.04462 6.12947 6.13316 6.27750 6.31196 6.38398 6.43643 6.49671 6.56294 6.60735 6.71684 6.77735 6.89781 7.07055 7.18307 7.72019 8.06090 8.43211 8.60747 9.13517 9.87318 10.29693 11.24192 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.002475 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.397226 B =11309.388179 C =12472.665282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.066 4.066 4 C -0.117 4.117 5 C -0.122 4.122 6 C -0.125 4.125 7 C -0.118 4.118 8 C -0.050 4.050 9 C -0.086 4.086 10 H 0.130 0.870 11 C -0.147 4.147 12 C -0.175 4.175 13 H 0.123 0.877 14 C 0.539 3.461 15 O -0.535 6.535 16 N -0.719 5.719 17 C 0.126 3.874 18 H 0.086 0.914 19 C -0.115 4.115 20 C -0.134 4.134 21 C 0.147 3.853 22 N -0.595 5.595 23 C -0.347 4.347 24 H 0.057 0.943 25 C -0.024 4.024 26 N -0.917 5.917 27 Si 1.065 2.935 28 H -0.285 1.285 29 H -0.293 1.293 30 H -0.292 1.292 31 C 0.145 3.855 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.395 0.605 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.082 0.918 49 H 0.017 0.983 50 H 0.268 0.732 51 H 0.015 0.985 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 22.506 -10.524 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.130 4.130 3 C -0.066 4.066 4 C -0.135 4.135 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.136 4.136 8 C -0.050 4.050 9 C -0.104 4.104 10 H 0.148 0.852 11 C -0.184 4.184 12 C -0.196 4.196 13 H 0.141 0.859 14 C 0.324 3.676 15 O -0.411 6.411 16 N -0.368 5.368 17 C 0.021 3.979 18 H 0.104 0.896 19 C -0.153 4.153 20 C -0.174 4.174 21 C 0.021 3.979 22 N -0.319 5.319 23 C -0.476 4.476 24 H 0.075 0.925 25 C -0.226 4.226 26 N -0.558 5.558 27 Si 0.894 3.106 28 H -0.211 1.211 29 H -0.220 1.220 30 H -0.219 1.219 31 C 0.017 3.983 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.228 0.772 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.100 0.900 49 H 0.035 0.965 50 H 0.079 0.921 51 H 0.033 0.967 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.904 20.241 -10.132 23.665 hybrid contribution 0.516 2.116 -0.561 2.249 sum -6.388 22.358 -10.693 25.593 Atomic orbital electron populations 1.21734 0.94555 1.02053 1.01914 1.20623 0.96401 0.92415 1.03556 1.19768 0.98232 0.96295 0.92342 1.21043 0.99856 0.95163 0.97449 1.21124 0.99978 0.94831 0.98055 1.21073 1.00770 0.99896 0.92525 1.21040 0.99711 0.94492 0.98320 1.18988 0.99495 0.93696 0.92827 1.21129 1.00507 1.01715 0.87041 0.85176 1.23118 0.99343 0.96277 0.99641 1.22370 0.96799 0.98010 1.02430 0.85934 1.19535 0.81436 0.86486 0.80120 1.90729 1.37455 1.44481 1.68441 1.46048 1.30334 1.23443 1.37020 1.21806 1.01642 0.84395 0.90044 0.89553 1.21671 0.99905 0.98415 0.95292 1.22060 1.01878 0.95939 0.97507 1.21011 0.93478 0.96786 0.86631 1.44076 1.72652 1.05124 1.10019 1.20012 1.15596 0.83589 1.28379 0.92538 1.25858 0.96450 1.00831 0.99443 1.70792 1.06316 1.30860 1.47804 0.83532 0.75067 0.75803 0.76184 1.21100 1.22006 1.21942 1.21262 0.96185 0.87448 0.93358 0.92103 0.92390 0.92839 0.91067 0.90016 0.86060 0.86220 0.86188 0.85923 0.87762 0.87567 0.77167 0.92820 0.92260 0.92058 0.92490 0.90016 0.96476 0.92126 0.96705 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.74 37.16 0.36 -1.03 16 2 C -0.09 -0.97 5.38 -27.88 -0.15 -1.12 16 3 C -0.07 -0.70 5.13 -104.63 -0.54 -1.23 16 4 C -0.12 -1.09 9.68 -39.58 -0.38 -1.47 16 5 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 6 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 7 C -0.12 -1.05 9.30 -39.58 -0.37 -1.42 16 8 C -0.05 -0.52 5.61 -104.62 -0.59 -1.11 16 9 C -0.09 -0.95 4.66 -91.77 -0.43 -1.37 16 10 H 0.13 1.67 5.47 -51.93 -0.28 1.38 16 11 C -0.15 -1.35 9.56 -26.73 -0.26 -1.60 16 12 C -0.17 -1.95 5.82 -91.77 -0.53 -2.48 16 13 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.54 8.21 7.58 -10.98 -0.08 8.12 16 15 O -0.53 -10.48 15.92 5.56 0.09 -10.40 16 16 N -0.72 -10.33 5.08 -53.47 -0.27 -10.60 16 17 C 0.13 2.29 2.62 -67.59 -0.18 2.11 16 18 H 0.09 1.81 7.58 -51.93 -0.39 1.42 16 19 C -0.11 -1.83 5.35 -26.69 -0.14 -1.97 16 20 C -0.13 -2.47 6.08 -26.61 -0.16 -2.64 16 21 C 0.15 3.42 4.68 -3.71 -0.02 3.40 16 22 N -0.59 -15.28 2.84 -172.05 -0.49 -15.77 16 23 C -0.35 -10.01 9.49 -15.06 -0.14 -10.16 16 24 H 0.06 1.68 7.94 -52.48 -0.42 1.26 16 25 C -0.02 -0.70 4.69 -17.43 -0.08 -0.78 16 26 N -0.92 -27.73 12.41 55.49 0.69 -27.04 16 27 Si 1.06 25.87 29.98 -169.99 -5.10 20.77 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 31 C 0.15 3.22 6.12 -3.49 -0.02 3.20 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.58 7.17 -51.93 -0.37 0.20 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.08 1.01 6.94 -51.93 -0.36 0.65 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.12 0.87 6.02 -52.48 -0.32 0.56 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.11 0.73 6.17 -51.93 -0.32 0.41 16 43 H 0.40 4.37 8.60 -40.82 -0.35 4.02 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.08 2.14 6.31 -51.93 -0.33 1.81 16 49 H 0.02 0.40 7.86 -51.93 -0.41 0.00 16 50 H 0.27 8.13 6.69 -40.82 -0.27 7.86 16 51 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 52 H 0.06 1.44 7.93 -51.92 -0.41 1.03 16 LS Contribution 409.35 15.07 6.17 6.17 Total: -1.00 -33.42 409.35 -11.94 -45.36 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.52 Total: 5.90 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -4.51 Total: -14.40 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: -0.07 Total: -53.41 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.40 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.10 Total: 20.77 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.42 -11.94 -45.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008341279.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.850 kcal (2) G-P(sol) polarization free energy of solvation -33.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds