Wall clock time and date at job start Wed Apr 1 2020 03:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.46818 * 2 1 4 4 C 1.38260 * 119.99959 * 264.97333 * 3 2 1 5 5 C 1.38211 * 119.99949 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.00271 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99552 * 359.81206 * 6 5 4 8 8 C 1.38207 * 120.00080 * 85.00066 * 3 2 1 9 9 C 1.50704 * 120.00165 * 359.97438 * 8 3 2 10 10 H 1.09004 * 115.55680 * 334.31109 * 9 8 3 11 11 C 1.52995 * 117.49853 * 188.62405 * 9 8 3 12 12 C 1.52996 * 117.49767 * 119.99845 * 9 8 3 13 13 H 1.08998 * 117.52201 * 0.02562 * 12 9 8 14 14 C 1.50702 * 117.49855 * 214.97926 * 12 9 8 15 15 O 1.21279 * 119.99643 * 359.97438 * 14 12 9 16 16 N 1.34776 * 120.00329 * 179.97438 * 14 12 9 17 17 C 1.46501 * 120.00276 * 180.02562 * 16 14 12 18 18 H 1.09001 * 109.49519 * 325.06223 * 17 16 14 19 19 C 1.53039 * 109.49679 * 204.99976 * 17 16 14 20 20 C 1.53044 * 109.53646 * 178.68229 * 19 17 16 21 21 C 1.53189 * 109.31349 * 61.36374 * 20 19 17 22 22 N 1.46926 * 108.77454 * 305.36694 * 21 20 19 23 23 C 1.36940 * 120.62842 * 233.58851 * 22 21 20 24 24 H 1.08003 * 120.00249 * 152.05572 * 23 22 21 25 25 C 1.38815 * 120.00013 * 332.04455 * 23 22 21 26 26 N 1.31617 * 120.00138 * 335.35859 * 25 23 22 27 27 Si 1.86800 * 119.99966 * 155.34778 * 25 23 22 28 28 H 1.48498 * 109.47028 * 180.02562 * 27 25 23 29 29 H 1.48498 * 109.47108 * 300.00617 * 27 25 23 30 30 H 1.48495 * 109.47028 * 60.00290 * 27 25 23 31 31 C 1.46923 * 118.74097 * 53.85812 * 22 21 20 32 32 H 1.08994 * 109.47301 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47132 * 300.00162 * 1 2 3 34 34 H 1.09005 * 109.46967 * 59.99910 * 1 2 3 35 35 H 1.08999 * 109.47132 * 239.99838 * 2 1 3 36 36 H 1.08994 * 109.47245 * 119.99687 * 2 1 3 37 37 H 1.07999 * 119.99614 * 359.97438 * 4 3 2 38 38 H 1.07998 * 119.99912 * 179.97438 * 5 4 3 39 39 H 1.07994 * 120.00088 * 179.97438 * 6 5 4 40 40 H 1.08004 * 119.99825 * 180.22732 * 7 6 5 41 41 H 1.09000 * 117.49892 * 145.01993 * 11 9 8 42 42 H 1.08996 * 117.52165 * 359.97438 * 11 9 8 43 43 H 0.97000 * 119.99533 * 0.02562 * 16 14 12 44 44 H 1.09005 * 109.46084 * 58.65978 * 19 17 16 45 45 H 1.08994 * 109.45956 * 298.70069 * 19 17 16 46 46 H 1.09004 * 109.49423 * 301.41100 * 20 19 17 47 47 H 1.08997 * 109.49382 * 181.31667 * 20 19 17 48 48 H 1.08997 * 109.58310 * 185.57933 * 21 20 19 49 49 H 1.09000 * 109.58597 * 65.15139 * 21 20 19 50 50 H 0.97004 * 119.99413 * 354.23471 * 26 25 23 51 51 H 1.09005 * 109.58626 * 65.93043 * 31 22 21 52 52 H 1.09008 * 109.58620 * 186.35134 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0376 -1.1928 5 6 2.8227 3.3406 -1.1927 6 6 2.9543 4.0273 0.0000 7 6 2.6209 3.4122 1.1919 8 6 2.1643 2.1071 1.1923 9 6 1.8054 1.4349 2.4925 10 1 1.0735 0.6304 2.4195 11 6 1.7785 2.3023 3.7525 12 6 2.9090 1.2929 3.5426 13 1 3.8947 1.6860 3.2936 14 6 2.9010 0.0516 4.3970 15 8 2.0404 -0.7881 4.2384 16 7 3.8501 -0.1254 5.3374 17 6 3.8426 -1.3324 6.1677 18 1 2.8133 -1.6315 6.3655 19 6 4.5548 -1.0461 7.4917 20 6 4.5187 -2.2967 8.3731 21 6 5.2558 -3.4374 7.6645 22 7 4.6694 -3.6224 6.3301 23 6 4.2223 -4.8531 5.9291 24 1 3.4254 -4.9283 5.2040 25 6 4.7934 -6.0041 6.4545 26 7 6.0207 -5.9723 6.9289 27 14 3.8199 -7.5980 6.4886 28 1 4.6481 -8.6710 7.0954 29 1 2.5877 -7.4083 7.2954 30 1 3.4498 -7.9817 5.1027 31 6 4.5772 -2.4634 5.4320 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.2593 1.5010 -2.1244 38 1 3.0804 3.8222 -2.1244 39 1 3.3150 5.0453 0.0000 40 1 2.7201 3.9499 2.1234 41 1 1.0290 2.0686 4.5085 42 1 2.0207 3.3592 3.6415 43 1 4.5381 0.5464 5.4645 44 1 4.0522 -0.2258 8.0043 45 1 5.5907 -0.7705 7.2946 46 1 3.4832 -2.5872 8.5502 47 1 5.0055 -2.0849 9.3251 48 1 5.1484 -4.3558 8.2415 49 1 6.3119 -3.1855 7.5677 50 1 6.5558 -5.1686 6.8359 51 1 5.5791 -2.1337 5.1568 52 1 4.0219 -2.7391 4.5354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008341279.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:44 Heat of formation + Delta-G solvation = -1.950743 kcal Electronic energy + Delta-G solvation = -29793.108240 eV Core-core repulsion = 25950.058832 eV Total energy + Delta-G solvation = -3843.049408 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -41.51857 -40.52572 -39.27182 -37.33692 -36.12192 -35.12144 -34.23522 -32.33107 -31.58388 -30.44679 -30.18389 -27.13410 -25.90444 -24.90572 -24.68459 -24.01614 -23.17652 -22.00419 -21.46798 -21.12247 -20.64380 -19.45278 -18.53539 -17.53749 -17.16743 -16.61784 -16.39012 -16.14067 -15.97141 -15.81243 -15.49617 -15.37219 -15.14564 -14.85065 -14.74580 -14.44014 -14.40109 -14.10078 -14.07565 -13.67600 -13.61672 -13.15586 -13.02855 -12.77844 -12.70373 -12.64202 -12.47838 -12.32027 -11.97795 -11.92611 -11.88658 -11.85685 -11.81868 -11.70601 -11.48438 -11.38159 -11.28000 -10.92257 -10.63779 -10.15914 -9.67191 -9.40118 -8.98133 -8.30994 -5.47541 0.37319 0.49780 1.46371 1.53884 1.60928 1.81074 2.05704 2.60621 2.66346 3.06509 3.15156 3.44803 3.58274 3.65443 3.76559 3.83542 3.89035 3.92444 3.98896 4.09012 4.11284 4.14030 4.26150 4.30815 4.30850 4.40406 4.43490 4.60869 4.61362 4.65362 4.67337 4.70668 4.73720 4.87412 4.92105 4.93940 4.98779 5.03062 5.05024 5.09829 5.12265 5.16199 5.22462 5.24255 5.31402 5.36852 5.50663 5.62194 5.64264 5.77110 5.78486 6.13349 6.34246 6.55432 6.99613 7.25651 7.71329 8.12439 8.92961 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014107 B = 0.002475 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.397226 B =11309.388179 C =12472.665282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 C -0.087 4.087 4 C -0.127 4.127 5 C -0.125 4.125 6 C -0.126 4.126 7 C -0.119 4.119 8 C -0.064 4.064 9 C -0.095 4.095 10 H 0.102 0.898 11 C -0.120 4.120 12 C -0.176 4.176 13 H 0.148 0.852 14 C 0.534 3.466 15 O -0.587 6.587 16 N -0.704 5.704 17 C 0.143 3.857 18 H 0.054 0.946 19 C -0.103 4.103 20 C -0.125 4.125 21 C 0.150 3.850 22 N -0.615 5.615 23 C -0.361 4.361 24 H 0.035 0.965 25 C -0.069 4.069 26 N -0.935 5.935 27 Si 1.113 2.887 28 H -0.283 1.283 29 H -0.280 1.280 30 H -0.280 1.280 31 C 0.148 3.852 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.098 0.902 42 H 0.141 0.859 43 H 0.417 0.583 44 H 0.091 0.909 45 H 0.078 0.922 46 H 0.048 0.952 47 H 0.091 0.909 48 H 0.046 0.954 49 H 0.014 0.986 50 H 0.256 0.744 51 H 0.021 0.979 52 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 26.103 -10.423 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.087 4.087 4 C -0.145 4.145 5 C -0.143 4.143 6 C -0.144 4.144 7 C -0.137 4.137 8 C -0.064 4.064 9 C -0.113 4.113 10 H 0.120 0.880 11 C -0.157 4.157 12 C -0.197 4.197 13 H 0.165 0.835 14 C 0.321 3.679 15 O -0.467 6.467 16 N -0.355 5.355 17 C 0.036 3.964 18 H 0.072 0.928 19 C -0.141 4.141 20 C -0.165 4.165 21 C 0.024 3.976 22 N -0.340 5.340 23 C -0.491 4.491 24 H 0.053 0.947 25 C -0.265 4.265 26 N -0.577 5.577 27 Si 0.937 3.063 28 H -0.209 1.209 29 H -0.206 1.206 30 H -0.206 1.206 31 C 0.021 3.979 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.117 0.883 42 H 0.159 0.841 43 H 0.254 0.746 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.066 0.934 47 H 0.109 0.891 48 H 0.064 0.936 49 H 0.032 0.968 50 H 0.066 0.934 51 H 0.039 0.961 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.485 23.911 -10.029 26.728 hybrid contribution 0.399 1.020 -0.684 1.291 sum -6.086 24.931 -10.713 27.809 Atomic orbital electron populations 1.21695 0.94105 1.01933 1.02085 1.20547 0.96877 0.93021 1.02289 1.19858 0.99447 0.96094 0.93329 1.21241 0.99958 0.95957 0.97368 1.21461 0.99077 0.94382 0.99356 1.21441 0.99835 1.01013 0.92063 1.21293 0.98995 0.93687 0.99724 1.19022 1.00639 0.94611 0.92124 1.21016 0.99971 1.01962 0.88395 0.88037 1.23256 0.97370 0.97369 0.97733 1.22317 0.98558 0.96705 1.02090 0.83470 1.20323 0.80429 0.87197 0.79907 1.90714 1.39563 1.46650 1.69815 1.45822 1.30880 1.22545 1.36278 1.21291 0.99330 0.84436 0.91324 0.92792 1.21611 1.01148 0.98115 0.93248 1.21935 1.00558 0.95064 0.98915 1.20965 0.93853 0.97274 0.85461 1.44286 1.73036 1.05064 1.11637 1.20136 1.15034 0.85570 1.28344 0.94670 1.27186 0.96616 1.03806 0.98936 1.70902 1.07062 1.30394 1.49314 0.82895 0.74180 0.72297 0.76962 1.20873 1.20633 1.20601 1.21284 0.96341 0.88000 0.92285 0.92389 0.93210 0.91517 0.90507 0.92978 0.85044 0.83996 0.83561 0.83696 0.88350 0.84094 0.74591 0.89010 0.90306 0.93351 0.89074 0.93558 0.96785 0.93425 0.96103 0.95892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.74 71.98 0.70 -2.17 16 2 C -0.09 -2.02 5.38 29.85 0.16 -1.86 16 3 C -0.09 -1.82 5.13 -19.87 -0.10 -1.93 16 4 C -0.13 -2.21 9.68 22.27 0.22 -1.99 16 5 C -0.12 -1.77 10.05 22.27 0.22 -1.54 16 6 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 7 C -0.12 -1.77 9.30 22.27 0.21 -1.56 16 8 C -0.06 -1.27 5.61 -19.87 -0.11 -1.38 16 9 C -0.09 -2.08 4.66 -11.54 -0.05 -2.13 16 10 H 0.10 2.82 5.47 -2.38 -0.01 2.81 16 11 C -0.12 -1.94 9.56 30.59 0.29 -1.65 16 12 C -0.18 -3.68 5.82 -11.54 -0.07 -3.75 16 13 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 14 C 0.53 16.36 7.58 87.66 0.66 17.02 16 15 O -0.59 -24.43 15.92 -3.03 -0.05 -24.48 16 16 N -0.70 -19.45 5.08 -441.48 -2.24 -21.69 16 17 C 0.14 5.14 2.62 45.21 0.12 5.26 16 18 H 0.05 2.33 7.58 -2.39 -0.02 2.31 16 19 C -0.10 -3.01 5.35 30.62 0.16 -2.85 16 20 C -0.13 -4.44 6.08 30.67 0.19 -4.26 16 21 C 0.15 7.09 4.68 86.36 0.40 7.50 16 22 N -0.62 -32.84 2.84 -698.26 -1.99 -34.83 16 23 C -0.36 -21.84 9.49 84.03 0.80 -21.04 16 24 H 0.04 2.23 7.94 -2.91 -0.02 2.21 16 25 C -0.07 -4.08 4.69 84.86 0.40 -3.68 16 26 N -0.94 -58.13 12.41 21.65 0.27 -57.86 16 27 Si 1.11 53.43 29.98 68.60 2.06 55.49 16 28 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 30 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 31 C 0.15 6.80 6.12 86.51 0.53 7.33 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.07 7.17 -2.39 -0.02 1.05 16 34 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 35 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 36 H 0.05 1.45 6.94 -2.39 -0.02 1.43 16 37 H 0.13 1.88 8.06 -2.91 -0.02 1.85 16 38 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 40 H 0.15 1.40 6.02 -2.91 -0.02 1.38 16 41 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.14 1.30 6.17 -2.39 -0.01 1.29 16 43 H 0.42 7.97 8.60 -92.71 -0.80 7.17 16 44 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 45 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 48 H 0.05 2.50 6.31 -2.39 -0.02 2.48 16 49 H 0.01 0.67 7.86 -2.39 -0.02 0.65 16 50 H 0.26 16.08 6.69 -92.71 -0.62 15.46 16 51 H 0.02 0.93 8.14 -2.38 -0.02 0.92 16 52 H 0.02 1.18 7.93 -2.38 -0.02 1.16 16 Total: -1.00 -78.60 409.35 3.27 -75.33 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.27 Total: 24.12 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 4.95 Total: -16.08 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -3.96 Total: -114.38 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -0.05 Total: -24.48 kcal Atomic # 14 Polarization: 53.43 SS G_CDS: 2.06 Total: 55.49 kcal Total: -78.60 3.27 -75.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008341279.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.381 kcal (2) G-P(sol) polarization free energy of solvation -78.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds