Wall clock time and date at job start Wed Apr 1 2020 02:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38239 * 120.00064 * 2 1 4 4 C 1.38234 * 119.99666 * 180.27263 * 3 2 1 5 5 C 1.38238 * 120.00388 * 359.46658 * 4 3 2 6 6 C 1.38238 * 119.99613 * 0.55310 * 5 4 3 7 7 C 1.50693 * 119.99599 * 179.72083 * 6 5 4 8 8 C 1.38234 * 119.99909 * 180.02562 * 2 1 3 9 9 C 1.50697 * 120.00455 * 0.02562 * 8 2 1 10 10 C 1.50703 * 109.46943 * 89.99530 * 9 8 2 11 11 O 1.21274 * 120.00047 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99704 * 180.02562 * 10 9 8 13 13 C 1.46500 * 120.00074 * 180.02562 * 12 10 9 14 14 H 1.09001 * 115.54766 * 350.68808 * 13 12 10 15 15 C 1.53029 * 117.50382 * 136.41708 * 13 12 10 16 16 C 1.52816 * 117.50410 * 205.00419 * 13 12 10 17 17 C 1.53187 * 117.71357 * 144.89924 * 16 13 12 18 18 C 1.53350 * 108.76995 * 158.89015 * 17 16 13 19 19 N 1.46841 * 108.81579 * 51.30745 * 18 17 16 20 20 C 1.36929 * 120.38478 * 123.07955 * 19 18 17 21 21 H 1.08002 * 120.00147 * 208.95720 * 20 19 18 22 22 C 1.38814 * 120.00285 * 28.95138 * 20 19 18 23 23 N 1.31612 * 119.99797 * 17.86027 * 22 20 19 24 24 Si 1.86802 * 120.00137 * 197.85961 * 22 20 19 25 25 H 1.48504 * 109.47032 * 59.99992 * 24 22 20 26 26 H 1.48494 * 109.46956 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.47127 * 300.00021 * 24 22 20 28 28 C 1.46857 * 119.23121 * 303.09709 * 19 18 17 29 29 C 1.53185 * 117.71216 * 0.13618 * 16 13 12 30 30 H 1.09001 * 109.46960 * 90.00405 * 1 2 3 31 31 H 1.08998 * 109.47288 * 210.00008 * 1 2 3 32 32 H 1.09002 * 109.47490 * 330.00454 * 1 2 3 33 33 H 1.08001 * 119.99559 * 0.02562 * 3 2 1 34 34 H 1.07999 * 119.99559 * 179.72774 * 4 3 2 35 35 H 1.07997 * 119.99784 * 180.27899 * 5 4 3 36 36 H 1.09004 * 109.47260 * 269.98039 * 7 6 5 37 37 H 1.08999 * 109.47693 * 29.98007 * 7 6 5 38 38 H 1.09000 * 109.47106 * 149.98063 * 7 6 5 39 39 H 1.09000 * 109.47613 * 209.99692 * 9 8 2 40 40 H 1.09004 * 109.46751 * 330.00001 * 9 8 2 41 41 H 0.96999 * 120.00183 * 0.02562 * 12 10 9 42 42 H 1.08997 * 117.50302 * 214.95819 * 15 13 12 43 43 H 1.08996 * 117.50048 * 0.02562 * 15 13 12 44 44 H 1.08999 * 109.58866 * 278.67489 * 17 16 13 45 45 H 1.08999 * 109.58501 * 39.10273 * 17 16 13 46 46 H 1.09004 * 109.57752 * 291.50981 * 18 17 16 47 47 H 1.08993 * 109.68913 * 171.17247 * 18 17 16 48 48 H 0.97002 * 120.00217 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.57933 * 297.11101 * 28 19 18 50 50 H 1.09004 * 109.57717 * 176.70715 * 28 19 18 51 51 H 1.08996 * 109.59257 * 320.90013 * 29 16 13 52 52 H 1.09003 * 109.58441 * 81.18860 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 -0.0057 5 6 4.2717 -0.0001 -0.0002 6 6 3.5805 -1.1972 -0.0007 7 6 4.3340 -2.5022 -0.0011 8 6 2.1981 -1.1971 -0.0005 9 6 1.4447 -2.5023 -0.0017 10 6 1.1940 -2.9363 -1.4230 11 8 1.5887 -2.2533 -2.3441 12 7 0.5312 -4.0835 -1.6702 13 6 0.2879 -4.5057 -3.0518 14 1 0.5302 -3.7693 -3.8180 15 6 0.5167 -5.9804 -3.3907 16 6 -0.9051 -5.4254 -3.3090 17 6 -1.6743 -5.2443 -4.6214 18 6 -2.4430 -6.5359 -4.9250 19 7 -3.2213 -6.9140 -3.7386 20 6 -4.5783 -7.0761 -3.8233 21 1 -5.1994 -6.8900 -2.9595 22 6 -5.1559 -7.4798 -5.0193 23 7 -4.4148 -8.0391 -5.9521 24 14 -6.9848 -7.2290 -5.3048 25 1 -7.3047 -5.7812 -5.2225 26 1 -7.3505 -7.7406 -6.6500 27 1 -7.7530 -7.9653 -4.2690 28 6 -2.5274 -7.1157 -2.4601 29 6 -1.7606 -5.8357 -2.1064 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6581 2.1325 0.0004 34 1 4.1205 2.1324 -0.0101 35 1 5.3517 0.0000 -0.0001 36 1 4.5154 -2.8167 -1.0289 37 1 5.2866 -2.3720 0.5125 38 1 3.7451 -3.2620 0.5128 39 1 2.0336 -3.2623 0.5118 40 1 0.4921 -2.3723 0.5119 41 1 0.2152 -4.6295 -0.9335 42 1 0.9096 -6.2144 -4.3801 43 1 0.8477 -6.6364 -2.5857 44 1 -2.3760 -4.4161 -4.5223 45 1 -0.9734 -5.0374 -5.4301 46 1 -1.7387 -7.3315 -5.1686 47 1 -3.1160 -6.3735 -5.7668 48 1 -4.8183 -8.3209 -6.7880 49 1 -1.8284 -7.9469 -2.5511 50 1 -3.2563 -7.3325 -1.6792 51 1 -1.1171 -6.0212 -1.2464 52 1 -2.4653 -5.0384 -1.8702 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016643039.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:27 Heat of formation + Delta-G solvation = 6.764620 kcal Electronic energy + Delta-G solvation = -29838.412264 eV Core-core repulsion = 25995.740782 eV Total energy + Delta-G solvation = -3842.671482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.43545 -40.49495 -39.38092 -37.10211 -34.55966 -34.47159 -34.18446 -33.26906 -31.65880 -30.18872 -29.56557 -27.52191 -27.50215 -26.22127 -24.07899 -23.61338 -22.74532 -21.82175 -21.58756 -21.09311 -19.79143 -18.51073 -18.00447 -17.44072 -17.20271 -16.88168 -16.64124 -15.77394 -15.66560 -15.53177 -15.35230 -15.15140 -14.98045 -14.76808 -14.38833 -14.17376 -14.12966 -13.82079 -13.80487 -13.76070 -13.49419 -13.37799 -13.21947 -13.08869 -12.86614 -12.55541 -12.54808 -12.48592 -12.33681 -12.26603 -12.01425 -11.77745 -11.75432 -11.70514 -11.37257 -11.26022 -11.01124 -10.68122 -10.46410 -9.63312 -9.48693 -9.40497 -8.61396 -7.85515 -5.31592 0.43858 0.50224 1.46440 1.49377 1.55606 1.61441 2.13381 2.52037 2.87441 2.96434 3.29327 3.64498 3.66283 3.81853 3.89790 3.90184 3.95363 4.00535 4.06808 4.13096 4.14564 4.18799 4.37765 4.52493 4.54130 4.59051 4.63869 4.74006 4.75262 4.77526 4.81792 4.85276 4.87661 4.92553 4.96744 4.99424 5.02324 5.04100 5.09990 5.18565 5.31464 5.32523 5.35718 5.39182 5.52867 5.58453 5.61649 5.66316 5.66805 5.77272 5.77940 6.17988 6.41875 6.58574 7.17061 7.29274 7.89908 8.40780 9.19397 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021558 B = 0.002167 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.535761 B =12918.072941 C =13511.925455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.121 4.121 5 C -0.141 4.141 6 C -0.084 4.084 7 C -0.117 4.117 8 C -0.084 4.084 9 C -0.104 4.104 10 C 0.519 3.481 11 O -0.577 6.577 12 N -0.688 5.688 13 C 0.088 3.912 14 H 0.113 0.887 15 C -0.170 4.170 16 C -0.115 4.115 17 C -0.094 4.094 18 C 0.181 3.819 19 N -0.608 5.608 20 C -0.262 4.262 21 H 0.066 0.934 22 C -0.051 4.051 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.280 1.280 26 H -0.295 1.295 27 H -0.274 1.274 28 C 0.144 3.856 29 C -0.081 4.081 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.415 0.585 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.046 0.954 45 H 0.062 0.938 46 H -0.001 1.001 47 H 0.052 0.948 48 H 0.249 0.751 49 H 0.018 0.982 50 H 0.055 0.945 51 H 0.088 0.912 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.083 13.843 17.092 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.085 4.085 3 C -0.160 4.160 4 C -0.139 4.139 5 C -0.159 4.159 6 C -0.084 4.084 7 C -0.173 4.173 8 C -0.085 4.085 9 C -0.143 4.143 10 C 0.308 3.692 11 O -0.456 6.456 12 N -0.338 5.338 13 C -0.019 4.019 14 H 0.131 0.869 15 C -0.208 4.208 16 C -0.116 4.116 17 C -0.133 4.133 18 C 0.055 3.945 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.083 0.917 22 C -0.247 4.247 23 N -0.580 5.580 24 Si 0.792 3.208 25 H -0.207 1.207 26 H -0.222 1.222 27 H -0.199 1.199 28 C 0.019 3.981 29 C -0.120 4.120 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.151 0.849 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.253 0.747 42 H 0.114 0.886 43 H 0.130 0.870 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.017 0.983 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.036 0.964 50 H 0.074 0.926 51 H 0.106 0.894 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.308 14.255 16.324 27.735 hybrid contribution -1.223 -0.338 -0.724 1.461 sum 16.085 13.916 15.601 26.377 Atomic orbital electron populations 1.20888 0.90590 1.03976 1.01982 1.20003 0.96752 0.93023 0.98739 1.21244 0.94837 0.97819 1.02119 1.21396 0.94396 0.98793 0.99311 1.21257 1.00604 0.92020 1.01998 1.20021 0.93245 0.96544 0.98570 1.20889 1.00529 0.93732 1.02153 1.19173 0.93220 0.93757 1.02319 1.20819 1.03879 0.96582 0.92983 1.20987 0.76441 0.79856 0.91956 1.90700 1.52180 1.54804 1.47899 1.45327 1.57220 1.23972 1.07321 1.21546 1.02146 0.92766 0.85439 0.86950 1.23597 0.97825 0.95725 1.03657 1.21792 0.89516 1.02984 0.97334 1.21618 0.97944 0.98729 0.95056 1.20510 0.92309 0.91579 0.90078 1.44232 1.03532 1.79491 1.05908 1.19470 0.83678 1.38349 0.97721 0.91660 1.25788 1.01638 0.98658 0.98608 1.70172 1.36586 1.43229 1.07970 0.85399 0.80827 0.77927 0.76665 1.20668 1.22174 1.19914 1.21023 0.94490 0.94839 0.87776 1.21442 0.97575 0.98025 0.94986 0.92559 0.90199 0.90073 0.84868 0.84245 0.84598 0.92246 0.89971 0.90091 0.85151 0.85630 0.74745 0.88573 0.86971 0.93504 0.91900 0.98315 0.92943 0.94169 0.96445 0.92611 0.89381 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 9.60 71.23 0.68 -1.35 16 2 C -0.09 -1.75 5.88 -19.87 -0.12 -1.87 16 3 C -0.14 -2.72 9.70 22.27 0.22 -2.51 16 4 C -0.12 -2.15 10.05 22.27 0.22 -1.93 16 5 C -0.14 -2.58 9.70 22.27 0.22 -2.36 16 6 C -0.08 -1.64 5.88 -19.87 -0.12 -1.75 16 7 C -0.12 -1.74 9.60 71.23 0.68 -1.05 16 8 C -0.08 -1.71 4.37 -19.87 -0.09 -1.80 16 9 C -0.10 -1.65 5.02 29.10 0.15 -1.51 16 10 C 0.52 12.12 7.82 87.66 0.69 12.81 16 11 O -0.58 -19.06 15.60 -3.01 -0.05 -19.10 16 12 N -0.69 -14.45 5.35 -442.78 -2.37 -16.82 16 13 C 0.09 2.35 6.14 44.94 0.28 2.63 16 14 H 0.11 3.52 7.40 -2.39 -0.02 3.51 16 15 C -0.17 -4.43 9.86 30.55 0.30 -4.13 16 16 C -0.11 -3.53 1.94 -52.17 -0.10 -3.63 16 17 C -0.09 -3.60 5.83 30.77 0.18 -3.42 16 18 C 0.18 8.75 5.41 86.43 0.47 9.22 16 19 N -0.61 -30.11 2.94 -698.89 -2.05 -32.16 16 20 C -0.26 -14.31 9.54 84.04 0.80 -13.50 16 21 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 22 C -0.05 -2.88 4.88 84.86 0.41 -2.47 16 23 N -0.93 -55.46 11.23 21.65 0.24 -55.22 16 24 Si 0.96 44.93 29.59 68.60 2.03 46.96 16 25 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 28 C 0.14 5.62 6.52 86.43 0.56 6.18 16 29 C -0.08 -2.41 5.37 30.77 0.17 -2.24 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.12 5.95 -2.39 -0.01 1.11 16 32 H 0.08 1.11 8.09 -2.39 -0.02 1.09 16 33 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 38 H 0.08 0.93 5.95 -2.39 -0.01 0.91 16 39 H 0.13 1.35 5.95 -2.39 -0.01 1.34 16 40 H 0.13 1.46 5.95 -2.39 -0.01 1.45 16 41 H 0.41 6.24 7.12 -92.71 -0.66 5.58 16 42 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 43 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.06 2.21 8.10 -2.39 -0.02 2.19 16 46 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 47 H 0.05 2.91 5.93 -2.39 -0.01 2.89 16 48 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 2.12 7.92 -2.39 -0.02 2.10 16 51 H 0.09 1.87 6.75 -2.39 -0.02 1.85 16 52 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -72.49 407.84 3.67 -68.82 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: 0.26 Total: 22.22 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.60 Total: -14.70 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -4.18 Total: -104.20 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -72.49 3.67 -68.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016643039.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.581 kcal (2) G-P(sol) polarization free energy of solvation -72.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds