Wall clock time and date at job start Wed Apr 1 2020 02:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 120.00330 * 2 1 4 4 C 1.38235 * 119.99865 * 180.02562 * 3 2 1 5 5 C 1.38234 * 120.00238 * 0.25477 * 4 3 2 6 6 C 1.38242 * 119.99775 * 359.49048 * 5 4 3 7 7 C 1.50702 * 119.99864 * 180.23079 * 6 5 4 8 8 C 1.38235 * 119.99790 * 0.50950 * 6 5 4 9 9 C 1.50700 * 119.99729 * 179.72247 * 8 6 5 10 10 C 1.50699 * 109.47308 * 270.02255 * 9 8 6 11 11 O 1.21291 * 119.99622 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00392 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00142 * 180.02562 * 12 10 9 14 14 H 1.09004 * 115.55295 * 9.29218 * 13 12 10 15 15 C 1.53031 * 117.49883 * 223.60758 * 13 12 10 16 16 C 1.52813 * 117.50171 * 155.02302 * 13 12 10 17 17 C 1.53186 * 117.71437 * 359.85773 * 16 13 12 18 18 C 1.53354 * 108.77023 * 158.88835 * 17 16 13 19 19 N 1.46836 * 108.81675 * 51.30454 * 18 17 16 20 20 C 1.36940 * 120.38380 * 123.12041 * 19 18 17 21 21 H 1.07994 * 120.00371 * 208.89128 * 20 19 18 22 22 C 1.38813 * 119.99792 * 28.88560 * 20 19 18 23 23 N 1.31620 * 119.99680 * 17.85907 * 22 20 19 24 24 Si 1.86795 * 120.00266 * 197.85222 * 22 20 19 25 25 H 1.48505 * 109.46891 * 90.00244 * 24 22 20 26 26 H 1.48498 * 109.47471 * 210.00565 * 24 22 20 27 27 H 1.48501 * 109.47032 * 330.00666 * 24 22 20 28 28 C 1.46850 * 119.23696 * 303.10384 * 19 18 17 29 29 C 1.53187 * 117.71491 * 215.09358 * 16 13 12 30 30 H 1.08992 * 109.47309 * 89.99649 * 1 2 3 31 31 H 1.09001 * 109.47232 * 210.00055 * 1 2 3 32 32 H 1.08998 * 109.46467 * 329.99447 * 1 2 3 33 33 H 1.07997 * 120.00080 * 0.02562 * 3 2 1 34 34 H 1.08000 * 120.00186 * 179.97438 * 4 3 2 35 35 H 1.07999 * 120.00057 * 179.72241 * 5 4 3 36 36 H 1.08992 * 109.47006 * 270.28005 * 7 6 5 37 37 H 1.09001 * 109.47091 * 30.27822 * 7 6 5 38 38 H 1.08997 * 109.46834 * 150.27608 * 7 6 5 39 39 H 1.08997 * 109.47202 * 30.02090 * 9 8 6 40 40 H 1.08999 * 109.47036 * 150.02560 * 9 8 6 41 41 H 0.97001 * 119.99697 * 359.97438 * 12 10 9 42 42 H 1.08994 * 117.50753 * 359.97438 * 15 13 12 43 43 H 1.09004 * 117.50022 * 145.01680 * 15 13 12 44 44 H 1.08997 * 109.58792 * 278.67042 * 17 16 13 45 45 H 1.09004 * 109.58496 * 39.10444 * 17 16 13 46 46 H 1.09006 * 109.58043 * 291.50713 * 18 17 16 47 47 H 1.08999 * 109.57845 * 171.10712 * 18 17 16 48 48 H 0.97006 * 119.99647 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.57508 * 297.10559 * 28 19 18 50 50 H 1.08994 * 109.58218 * 176.70187 * 28 19 18 51 51 H 1.08990 * 109.58871 * 320.90725 * 29 16 13 52 52 H 1.09000 * 109.58210 * 81.33384 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0002 -0.0064 6 6 3.5805 -1.1973 -0.0011 7 6 4.3339 -2.5025 -0.0022 8 6 2.1981 -1.1972 -0.0005 9 6 1.4446 -2.5023 -0.0011 10 6 1.1933 -2.9368 -1.4220 11 8 1.5878 -2.2540 -2.3436 12 7 0.5303 -4.0839 -1.6688 13 6 0.2865 -4.5065 -3.0502 14 1 0.8039 -3.9293 -3.8167 15 6 -1.1055 -5.0441 -3.3895 16 6 0.0847 -5.9994 -3.3062 17 6 0.1550 -6.9445 -2.1027 18 6 -0.5716 -8.2480 -2.4558 19 7 -0.0502 -8.7498 -3.7335 20 6 0.4854 -10.0073 -3.8171 21 1 1.2535 -10.2198 -4.5459 22 6 0.0411 -11.0089 -2.9650 23 7 -1.1054 -10.8743 -2.3326 24 14 1.0701 -12.5479 -2.7159 25 1 2.0048 -12.3400 -1.5808 26 1 0.1779 -13.6972 -2.4183 27 1 1.8456 -12.8300 -3.9505 28 6 -0.1100 -7.8876 -4.9208 29 6 0.6260 -6.5769 -4.6178 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3632 0.8899 0.5139 33 1 1.6583 2.1324 0.0004 34 1 4.1207 2.1322 -0.0010 35 1 5.3517 -0.0002 -0.0113 36 1 4.5152 -2.8164 -1.0301 37 1 5.2866 -2.3725 0.5113 38 1 3.7450 -3.2624 0.5114 39 1 2.0336 -3.2622 0.5124 40 1 0.4922 -2.3721 0.5128 41 1 0.2151 -4.6301 -0.9317 42 1 -1.8397 -5.0837 -2.5849 43 1 -1.5039 -4.8206 -4.3792 44 1 1.1974 -7.1595 -1.8673 45 1 -0.3273 -6.4785 -1.2435 46 1 -1.6408 -8.0569 -2.5474 47 1 -0.3962 -8.9872 -1.6742 48 1 -1.4160 -11.5745 -1.7373 49 1 -1.1506 -7.6741 -5.1650 50 1 0.3689 -8.3896 -5.7613 51 1 0.4564 -5.8670 -5.4271 52 1 1.6937 -6.7721 -4.5178 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016643040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:33 Heat of formation + Delta-G solvation = 23.190800 kcal Electronic energy + Delta-G solvation = -29895.706823 eV Core-core repulsion = 26053.747634 eV Total energy + Delta-G solvation = -3841.959189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.50612 -39.43779 -38.18910 -35.47715 -33.76610 -33.57460 -33.03410 -31.48195 -30.12327 -29.14546 -28.18305 -26.82498 -26.73629 -24.35461 -22.64476 -22.43717 -21.33030 -20.86612 -20.59641 -20.11262 -18.23070 -17.21859 -16.71599 -16.45285 -16.30047 -15.75140 -14.88689 -14.74865 -14.64682 -14.38869 -14.10148 -13.75160 -13.53698 -13.45620 -13.32207 -13.15195 -13.10949 -12.99613 -12.84307 -12.66548 -12.53104 -12.27587 -11.77890 -11.76035 -11.66753 -11.49763 -11.35398 -11.06149 -11.01141 -10.95218 -10.75630 -10.50077 -10.29235 -10.01336 -9.88367 -9.71272 -9.59313 -9.36725 -8.72913 -8.66379 -8.48050 -8.42824 -6.65647 -5.80745 -3.23679 1.19424 1.24987 2.60843 3.12178 3.36147 3.43524 3.44632 3.64987 4.18425 4.40711 4.48351 4.59816 4.71661 4.78447 4.85797 4.85992 5.00066 5.05659 5.14464 5.15438 5.18838 5.24241 5.37482 5.43855 5.46996 5.47778 5.50902 5.58388 5.62715 5.66334 5.70647 5.88155 5.99510 6.04691 6.05699 6.09895 6.12496 6.27353 6.34228 6.38796 6.43779 6.51954 6.55717 6.59457 6.65255 6.70411 6.82483 6.88803 6.98913 7.31974 7.54335 7.62704 7.78538 8.25827 8.44874 9.20339 9.83861 10.40564 11.27021 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018624 B = 0.002259 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.063906 B =12391.863291 C =12968.154571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.127 4.127 6 C -0.066 4.066 7 C -0.120 4.120 8 C -0.065 4.065 9 C -0.112 4.112 10 C 0.519 3.481 11 O -0.534 6.534 12 N -0.697 5.697 13 C 0.070 3.930 14 H 0.130 0.870 15 C -0.183 4.183 16 C -0.097 4.097 17 C -0.104 4.104 18 C 0.173 3.827 19 N -0.590 5.590 20 C -0.252 4.252 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.149 3.851 29 C -0.098 4.098 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.401 0.599 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.018 0.982 47 H 0.090 0.910 48 H 0.253 0.747 49 H 0.019 0.981 50 H 0.055 0.945 51 H 0.052 0.948 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.802 21.616 7.436 23.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.067 4.067 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.146 4.146 6 C -0.066 4.066 7 C -0.177 4.177 8 C -0.065 4.065 9 C -0.151 4.151 10 C 0.305 3.695 11 O -0.410 6.410 12 N -0.347 5.347 13 C -0.035 4.035 14 H 0.147 0.853 15 C -0.222 4.222 16 C -0.099 4.099 17 C -0.143 4.143 18 C 0.047 3.953 19 N -0.312 5.312 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.546 5.546 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.023 3.977 29 C -0.137 4.137 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.237 0.763 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.036 0.964 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.037 0.963 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.006 21.976 6.872 23.563 hybrid contribution 0.235 -1.009 0.517 1.158 sum 5.240 20.967 7.389 22.840 Atomic orbital electron populations 1.20873 0.91435 1.02542 1.02671 1.19672 0.95841 0.92560 0.98654 1.20921 0.94260 0.97202 1.02238 1.21065 0.94287 0.97829 1.00011 1.20940 0.99585 0.91933 1.02094 1.19700 0.92958 0.95515 0.98390 1.20888 0.99704 0.94244 1.02819 1.18912 0.92742 0.93062 1.01789 1.20789 1.02451 0.96635 0.95240 1.20400 0.77544 0.80559 0.91008 1.90706 1.50479 1.53620 1.46170 1.45434 1.57699 1.23558 1.08041 1.21850 0.99917 0.97330 0.84428 0.85274 1.23520 0.91650 1.04198 1.02795 1.21947 1.00016 0.89168 0.98725 1.21804 1.01450 0.97742 0.93319 1.20749 0.93567 0.91227 0.89736 1.43977 1.71222 1.12836 1.03152 1.19212 1.14067 0.85981 1.18894 0.91746 1.25047 0.95735 0.97410 1.01483 1.70039 1.18158 1.34149 1.32294 0.86305 0.79655 0.82716 0.78203 1.21465 1.21792 1.20419 1.20858 0.96479 0.89737 0.90664 1.21683 1.00388 0.98455 0.93195 0.90863 0.91436 0.91550 0.86276 0.86267 0.86228 0.90752 0.91495 0.91352 0.87668 0.87794 0.76347 0.88969 0.88574 0.92094 0.93798 0.96428 0.89224 0.93663 0.96264 0.92675 0.92909 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.60 36.01 0.35 -0.70 16 2 C -0.07 -0.73 5.88 -104.62 -0.62 -1.34 16 3 C -0.13 -1.28 9.70 -39.58 -0.38 -1.67 16 4 C -0.11 -1.10 10.05 -39.58 -0.40 -1.50 16 5 C -0.13 -1.31 9.70 -39.58 -0.38 -1.69 16 6 C -0.07 -0.73 5.88 -104.62 -0.62 -1.34 16 7 C -0.12 -1.15 9.60 36.01 0.35 -0.80 16 8 C -0.06 -0.73 4.37 -104.62 -0.46 -1.19 16 9 C -0.11 -1.10 5.01 -29.04 -0.15 -1.25 16 10 C 0.52 6.77 7.82 -10.99 -0.09 6.69 16 11 O -0.53 -9.04 15.60 5.55 0.09 -8.96 16 12 N -0.70 -8.73 5.35 -53.88 -0.29 -9.02 16 13 C 0.07 1.02 6.14 -68.01 -0.42 0.60 16 14 H 0.13 2.02 7.40 -51.93 -0.38 1.64 16 15 C -0.18 -2.62 9.86 -26.79 -0.26 -2.88 16 16 C -0.10 -1.57 1.94 -154.49 -0.30 -1.87 16 17 C -0.10 -1.84 5.37 -26.45 -0.14 -1.99 16 18 C 0.17 3.95 5.40 -3.68 -0.02 3.93 16 19 N -0.59 -14.42 2.94 -172.26 -0.51 -14.93 16 20 C -0.25 -6.79 9.54 -15.06 -0.14 -6.94 16 21 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 22 C 0.00 0.05 4.88 -17.43 -0.09 -0.04 16 23 N -0.90 -25.66 11.23 55.49 0.62 -25.04 16 24 Si 0.90 21.39 29.59 -169.99 -5.03 16.36 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.15 3.08 6.52 -3.67 -0.02 3.05 16 29 C -0.10 -1.68 5.83 -26.46 -0.15 -1.84 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.52 5.95 -51.93 -0.31 0.21 16 32 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.07 0.59 5.95 -51.93 -0.31 0.28 16 39 H 0.11 0.86 5.95 -51.93 -0.31 0.55 16 40 H 0.10 0.80 5.95 -51.93 -0.31 0.49 16 41 H 0.40 4.29 7.12 -40.82 -0.29 3.99 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.30 5.93 -51.93 -0.31 2.00 16 48 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 51 H 0.05 0.80 8.10 -51.93 -0.42 0.37 16 52 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 407.83 15.07 6.15 6.15 Total: -1.00 -31.95 407.83 -11.35 -43.30 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -8.44 Total: 4.90 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -3.94 Total: -12.76 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.17 Total: -48.99 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.95 -11.35 -43.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016643040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.488 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds