Wall clock time and date at job start Wed Apr 1 2020 03:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.46942 * 2 1 4 4 C 1.38254 * 120.00377 * 265.02464 * 3 2 1 5 5 C 1.38211 * 120.00582 * 180.02562 * 4 3 2 6 6 C 1.38256 * 119.99813 * 359.97438 * 5 4 3 7 7 C 1.38215 * 119.99972 * 359.74661 * 6 5 4 8 8 C 1.38215 * 120.00041 * 85.00119 * 3 2 1 9 9 C 1.50699 * 120.00087 * 359.97438 * 8 3 2 10 10 C 1.50705 * 109.46888 * 84.99915 * 9 8 3 11 11 O 1.21276 * 119.99978 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99775 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99757 * 180.02562 * 12 10 9 14 14 H 1.08998 * 115.54865 * 9.31692 * 13 12 10 15 15 C 1.53021 * 117.50169 * 223.58874 * 13 12 10 16 16 C 1.52810 * 117.49814 * 155.00315 * 13 12 10 17 17 C 1.53179 * 117.71642 * 359.86487 * 16 13 12 18 18 C 1.53347 * 108.76854 * 158.88467 * 17 16 13 19 19 N 1.46846 * 108.81744 * 51.31214 * 18 17 16 20 20 C 1.36932 * 120.38758 * 123.07821 * 19 18 17 21 21 H 1.07994 * 120.00312 * 208.90871 * 20 19 18 22 22 C 1.38814 * 119.99748 * 28.90311 * 20 19 18 23 23 N 1.31618 * 120.00134 * 17.86256 * 22 20 19 24 24 Si 1.86802 * 119.99935 * 197.85774 * 22 20 19 25 25 H 1.48499 * 109.47151 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46928 * 120.00243 * 24 22 20 27 27 H 1.48494 * 109.47243 * 239.99893 * 24 22 20 28 28 C 1.46850 * 119.23216 * 303.10015 * 19 18 17 29 29 C 1.53187 * 117.71007 * 215.10463 * 16 13 12 30 30 H 1.09014 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47683 * 299.99564 * 1 2 3 32 32 H 1.09001 * 109.47591 * 60.00293 * 1 2 3 33 33 H 1.09004 * 109.47211 * 240.00124 * 2 1 3 34 34 H 1.08996 * 109.47177 * 119.99918 * 2 1 3 35 35 H 1.08008 * 119.99677 * 359.97248 * 4 3 2 36 36 H 1.07997 * 120.00446 * 179.97438 * 5 4 3 37 37 H 1.07999 * 120.00444 * 179.97438 * 6 5 4 38 38 H 1.08002 * 120.00628 * 180.28053 * 7 6 5 39 39 H 1.09010 * 109.47322 * 325.00513 * 9 8 3 40 40 H 1.08995 * 109.47857 * 205.00349 * 9 8 3 41 41 H 0.97000 * 120.00313 * 0.02562 * 12 10 9 42 42 H 1.09004 * 117.50361 * 145.04673 * 15 13 12 43 43 H 1.09002 * 117.50935 * 359.97438 * 15 13 12 44 44 H 1.08993 * 109.59051 * 39.09645 * 17 16 13 45 45 H 1.09008 * 109.58612 * 278.66603 * 17 16 13 46 46 H 1.09000 * 109.57771 * 291.51031 * 18 17 16 47 47 H 1.09003 * 109.58252 * 171.11172 * 18 17 16 48 48 H 0.97004 * 120.00394 * 179.97438 * 23 22 20 49 49 H 1.08993 * 109.57718 * 176.69789 * 28 19 18 50 50 H 1.09003 * 109.57846 * 297.09918 * 28 19 18 51 51 H 1.08993 * 109.59463 * 81.33217 * 29 16 13 52 52 H 1.09005 * 109.58451 * 320.89478 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.3606 2.0380 -1.1928 5 6 2.8217 3.3409 -1.1928 6 6 2.9542 4.0273 0.0001 7 6 2.6206 3.4123 1.1920 8 6 2.1643 2.1071 1.1924 9 6 1.8054 1.4349 2.4925 10 6 2.9843 0.6374 2.9878 11 8 4.0146 0.6173 2.3483 12 7 2.8940 -0.0528 4.1420 13 6 4.0402 -0.8276 4.6238 14 1 4.9738 -0.6715 4.0832 15 6 3.7655 -2.2302 5.1704 16 6 4.1305 -1.0943 6.1257 17 6 3.0198 -0.5306 7.0174 18 6 2.9947 -1.3193 8.3322 19 7 4.3520 -1.3510 8.8916 20 6 4.5925 -0.8762 10.1532 21 1 5.5600 -0.4646 10.4000 22 6 3.5927 -0.9239 11.1150 23 7 2.5573 -1.7194 10.9491 24 14 3.7168 0.1409 12.6448 25 1 4.9675 0.9398 12.5918 26 1 2.5482 1.0552 12.7077 27 1 3.7329 -0.7253 13.8509 28 6 5.4487 -1.8973 8.0821 29 6 5.5237 -1.1202 6.7621 30 1 -0.3634 -1.0278 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.2575 1.5017 -2.1246 36 1 3.0786 3.8229 -2.1245 37 1 3.3150 5.0452 0.0002 38 1 2.7197 3.9499 2.1235 39 1 0.9567 0.7690 2.3352 40 1 1.5417 2.1909 3.2320 41 1 2.0701 -0.0365 4.6537 42 1 4.5185 -2.9973 4.9895 43 1 2.7320 -2.5764 5.1720 44 1 2.0592 -0.6314 6.5123 45 1 3.2169 0.5210 7.2258 46 1 2.6544 -2.3371 8.1412 47 1 2.3204 -0.8330 9.0371 48 1 1.8588 -1.7530 11.6214 49 1 6.3894 -1.7912 8.6223 50 1 5.2606 -2.9509 7.8756 51 1 5.8557 -0.1005 6.9568 52 1 6.2244 -1.6125 6.0876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016690227.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:58 Heat of formation + Delta-G solvation = 19.743463 kcal Electronic energy + Delta-G solvation = -29739.457865 eV Core-core repulsion = 25897.349188 eV Total energy + Delta-G solvation = -3842.108677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.45694 -39.40370 -38.19256 -35.48087 -34.51873 -33.23333 -32.62657 -31.44315 -30.12242 -29.71660 -28.42807 -27.60207 -24.35621 -24.09824 -22.81194 -22.46214 -21.81618 -21.06608 -20.52619 -20.13518 -18.23292 -17.22698 -16.75080 -16.48904 -16.28270 -15.82216 -15.22774 -14.87000 -14.65746 -14.23578 -14.14078 -13.96265 -13.70877 -13.57602 -13.41515 -13.27169 -13.15459 -12.99333 -12.64239 -12.35931 -12.27778 -12.18632 -11.99629 -11.71117 -11.52037 -11.49589 -11.36076 -11.02265 -10.96149 -10.88677 -10.75001 -10.50074 -10.28606 -10.01782 -9.89364 -9.70819 -9.59248 -9.36974 -8.94087 -8.73647 -8.48457 -8.43158 -6.65343 -5.80776 -3.23470 1.17432 1.25889 2.59366 3.11343 3.35177 3.43707 3.46131 3.66516 4.18355 4.41137 4.48452 4.54228 4.69963 4.76202 4.84100 4.94137 5.00035 5.01783 5.12009 5.14522 5.15923 5.19610 5.30012 5.36586 5.37737 5.43957 5.50975 5.62772 5.65916 5.69037 5.81698 5.87959 5.93256 6.01495 6.04654 6.09992 6.12274 6.27488 6.31820 6.35486 6.43870 6.49161 6.55831 6.59309 6.65148 6.70446 6.82564 6.85751 6.99075 7.32063 7.53360 7.62819 7.78847 8.24399 8.44875 9.20381 9.84011 10.40704 11.27040 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018476 B = 0.002171 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.111590 B =12892.859535 C =13174.593324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.060 4.060 9 C -0.108 4.108 10 C 0.517 3.483 11 O -0.534 6.534 12 N -0.697 5.697 13 C 0.070 3.930 14 H 0.130 0.870 15 C -0.183 4.183 16 C -0.097 4.097 17 C -0.104 4.104 18 C 0.173 3.827 19 N -0.590 5.590 20 C -0.251 4.251 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.149 3.851 29 C -0.098 4.098 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.401 0.599 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.018 0.982 47 H 0.090 0.910 48 H 0.253 0.747 49 H 0.055 0.945 50 H 0.019 0.981 51 H 0.063 0.937 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.713 6.121 -22.792 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.061 4.061 9 C -0.148 4.148 10 C 0.303 3.697 11 O -0.410 6.410 12 N -0.347 5.347 13 C -0.036 4.036 14 H 0.147 0.853 15 C -0.221 4.221 16 C -0.099 4.099 17 C -0.143 4.143 18 C 0.047 3.953 19 N -0.312 5.312 20 C -0.381 4.381 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.546 5.546 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.023 3.977 29 C -0.137 4.137 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.237 0.763 42 H 0.114 0.886 43 H 0.110 0.890 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.036 0.964 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.037 0.963 51 H 0.081 0.919 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.102 6.083 -23.132 24.268 hybrid contribution -0.407 0.486 1.071 1.244 sum -4.508 6.569 -22.062 23.457 Atomic orbital electron populations 1.21779 0.94654 1.01879 1.02169 1.20570 0.95970 0.92881 1.03186 1.19663 0.98364 0.95708 0.92622 1.20965 1.00259 0.95212 0.97298 1.21095 0.99802 0.94827 0.97997 1.21064 1.00692 0.99989 0.92545 1.21000 0.98518 0.94460 0.98258 1.19094 0.99989 0.93970 0.93025 1.20765 0.97660 1.00256 0.96134 1.20430 0.89405 0.79335 0.80524 1.90710 1.31013 1.62892 1.56377 1.45437 1.16308 1.49382 1.23563 1.21855 0.90919 0.94097 0.96700 0.85252 1.23520 1.02500 0.91929 1.04184 1.21945 0.98533 1.00316 0.89070 1.21802 0.93833 1.00606 0.98083 1.20749 0.87802 0.96217 0.90516 1.43982 1.03211 1.70735 1.13273 1.19238 0.99376 1.32663 0.86795 0.91733 1.25045 0.98690 0.98521 0.97442 1.70043 1.12042 1.37133 1.35414 0.86259 0.77550 0.80200 0.83002 1.20244 1.21574 1.21740 1.20861 0.92454 0.94264 0.90163 1.21687 0.92428 1.01362 0.98255 0.92225 0.92469 0.92478 0.91003 0.90974 0.86270 0.86284 0.86187 0.86159 0.87767 0.87912 0.76313 0.88558 0.88957 0.93793 0.92094 0.96421 0.89221 0.93716 0.92671 0.96259 0.91866 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.72 37.16 0.36 -0.70 16 2 C -0.09 -0.81 5.38 -27.89 -0.15 -0.96 16 3 C -0.06 -0.67 5.13 -104.63 -0.54 -1.21 16 4 C -0.12 -1.17 9.68 -39.59 -0.38 -1.55 16 5 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 6 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 7 C -0.10 -1.11 9.68 -39.58 -0.38 -1.49 16 8 C -0.06 -0.66 4.37 -104.62 -0.46 -1.12 16 9 C -0.11 -1.05 5.16 -29.03 -0.15 -1.20 16 10 C 0.52 6.74 7.03 -10.98 -0.08 6.67 16 11 O -0.53 -9.04 15.60 5.56 0.09 -8.95 16 12 N -0.70 -8.74 5.35 -53.89 -0.29 -9.03 16 13 C 0.07 1.01 6.14 -68.01 -0.42 0.59 16 14 H 0.13 2.03 7.40 -51.93 -0.38 1.65 16 15 C -0.18 -2.61 9.86 -26.80 -0.26 -2.88 16 16 C -0.10 -1.58 1.94 -154.50 -0.30 -1.88 16 17 C -0.10 -1.85 5.37 -26.46 -0.14 -1.99 16 18 C 0.17 3.96 5.40 -3.67 -0.02 3.94 16 19 N -0.59 -14.45 2.94 -172.25 -0.51 -14.96 16 20 C -0.25 -6.79 9.54 -15.06 -0.14 -6.93 16 21 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 22 C 0.00 0.04 4.88 -17.43 -0.09 -0.05 16 23 N -0.90 -25.69 11.23 55.49 0.62 -25.07 16 24 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.15 3.08 6.52 -3.67 -0.02 3.06 16 29 C -0.10 -1.69 5.83 -26.45 -0.15 -1.85 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.06 0.40 6.80 -51.93 -0.35 0.04 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 34 H 0.07 0.75 6.42 -51.93 -0.33 0.41 16 35 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 36 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 38 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.10 0.81 5.62 -51.92 -0.29 0.52 16 40 H 0.10 0.81 8.05 -51.93 -0.42 0.39 16 41 H 0.40 4.30 7.12 -40.82 -0.29 4.01 16 42 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 45 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 2.31 5.93 -51.93 -0.31 2.00 16 48 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 50 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 52 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 409.49 15.07 6.17 6.17 Total: -1.00 -31.87 409.49 -11.67 -43.53 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.60 Total: 4.61 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -4.12 Total: -12.68 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.17 Total: -49.06 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.87 -11.67 -43.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016690227.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.277 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds