Wall clock time and date at job start Wed Apr 1 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.46883 * 2 1 4 4 C 1.38250 * 120.00236 * 90.00341 * 3 2 1 5 5 C 1.38212 * 120.00114 * 180.25769 * 4 3 2 6 6 C 1.38255 * 120.00070 * 359.50217 * 5 4 3 7 7 C 1.38217 * 119.99619 * 0.45017 * 6 5 4 8 8 C 1.50699 * 119.99471 * 179.82714 * 7 6 5 9 9 C 1.50700 * 109.47388 * 269.97602 * 8 7 6 10 10 O 1.21282 * 120.00041 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.46501 * 120.00021 * 180.02562 * 11 9 8 13 13 H 1.08993 * 115.55203 * 9.31832 * 12 11 9 14 14 C 1.53030 * 117.50154 * 223.58601 * 12 11 9 15 15 C 1.52816 * 117.50011 * 155.00126 * 12 11 9 16 16 C 1.53184 * 117.71628 * 359.86160 * 15 12 11 17 17 C 1.53357 * 108.77042 * 158.88815 * 16 15 12 18 18 N 1.46838 * 108.81326 * 51.30656 * 17 16 15 19 19 C 1.36939 * 120.38105 * 123.12766 * 18 17 16 20 20 H 1.08001 * 119.99636 * 208.88397 * 19 18 17 21 21 C 1.38809 * 120.00257 * 28.87723 * 19 18 17 22 22 N 1.31625 * 119.99867 * 17.85755 * 21 19 18 23 23 Si 1.86796 * 120.00363 * 197.85659 * 21 19 18 24 24 H 1.48495 * 109.47202 * 59.99929 * 23 21 19 25 25 H 1.48502 * 109.47458 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47035 * 300.00037 * 23 21 19 27 27 C 1.46845 * 119.23596 * 303.09891 * 18 17 16 28 28 C 1.53186 * 117.71399 * 215.10037 * 15 12 11 29 29 C 1.38213 * 119.99995 * 269.97734 * 3 2 1 30 30 H 1.08997 * 109.47254 * 60.00759 * 1 2 3 31 31 H 1.09008 * 109.46873 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46998 * 300.00004 * 1 2 3 33 33 H 1.09001 * 109.47368 * 239.99833 * 2 1 3 34 34 H 1.08997 * 109.47484 * 119.99990 * 2 1 3 35 35 H 1.08004 * 119.99781 * 359.97113 * 4 3 2 36 36 H 1.08007 * 120.00078 * 179.71845 * 5 4 3 37 37 H 1.07999 * 120.00387 * 180.27347 * 6 5 4 38 38 H 1.08994 * 109.47699 * 29.98124 * 8 7 6 39 39 H 1.09002 * 109.46670 * 149.98147 * 8 7 6 40 40 H 0.97005 * 120.00026 * 0.02562 * 11 9 8 41 41 H 1.08997 * 117.50740 * 359.97438 * 14 12 11 42 42 H 1.09004 * 117.50327 * 145.04755 * 14 12 11 43 43 H 1.08996 * 109.58967 * 278.67071 * 16 15 12 44 44 H 1.09007 * 109.58471 * 39.10488 * 16 15 12 45 45 H 1.09005 * 109.57472 * 291.51106 * 17 16 15 46 46 H 1.08994 * 109.57918 * 171.10875 * 17 16 15 47 47 H 0.97001 * 119.99943 * 179.97438 * 22 21 19 48 48 H 1.09005 * 109.58437 * 297.10878 * 27 18 17 49 49 H 1.08999 * 109.58147 * 176.70855 * 27 18 17 50 50 H 1.09000 * 109.58919 * 320.90576 * 28 15 12 51 51 H 1.09001 * 109.58844 * 81.33375 * 28 15 12 52 52 H 1.08010 * 120.00035 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2627 2.0726 1.1972 5 6 2.7183 3.3775 1.1972 6 6 2.9534 4.0276 -0.0001 7 6 2.7239 3.3757 -1.1970 8 6 2.9764 4.0857 -2.5021 9 6 1.7210 4.7958 -2.9388 10 8 0.7199 4.7321 -2.2572 11 7 1.7108 5.5017 -4.0869 12 6 0.4905 6.1925 -4.5111 13 1 -0.3132 6.2216 -3.7755 14 6 0.0959 6.0884 -5.9860 15 6 0.6481 7.4016 -5.4323 16 6 2.0680 7.8049 -5.8419 17 6 1.9924 8.6444 -7.1231 18 7 1.0194 9.7260 -6.9238 19 6 1.3935 11.0330 -7.0884 20 1 0.8950 11.8116 -6.5301 21 6 2.4133 11.3570 -7.9725 22 7 2.7808 10.4957 -8.8975 23 14 3.2642 13.0154 -7.8498 24 1 3.8930 13.1512 -6.5114 25 1 4.3088 13.1149 -8.9005 26 1 2.2666 14.0989 -8.0402 27 6 -0.3594 9.3899 -6.5466 28 6 -0.3314 8.5658 -5.2536 29 6 2.2630 2.0722 -1.1970 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0823 1.5636 2.1326 36 1 2.8940 3.8882 2.1326 37 1 3.3136 5.0457 -0.0001 38 1 3.7781 4.8124 -2.3713 39 1 3.2653 3.3587 -3.2611 40 1 2.5114 5.5524 -4.6323 41 1 0.7444 5.5062 -6.6407 42 1 -0.9678 6.0488 -6.2210 43 1 2.5247 8.3933 -5.0461 44 1 2.6633 6.9104 -6.0257 45 1 1.6736 8.0148 -7.9539 46 1 2.9723 9.0697 -7.3394 47 1 3.4932 10.7222 -9.5155 48 1 -0.8238 8.8065 -7.3416 49 1 -0.9272 10.3059 -6.3837 50 1 -1.3282 8.1762 -5.0470 51 1 -0.0040 9.1952 -4.4261 52 1 2.0838 1.5628 -2.1324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016696417.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:07 Heat of formation + Delta-G solvation = 17.237769 kcal Electronic energy + Delta-G solvation = -29191.603803 eV Core-core repulsion = 25349.386472 eV Total energy + Delta-G solvation = -3842.217332 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -40.29012 -39.41243 -38.26179 -35.49466 -34.63309 -33.21617 -32.51140 -31.43977 -30.11902 -29.72993 -28.42596 -27.59231 -24.35001 -24.16995 -22.83189 -22.46107 -21.89595 -21.10946 -20.47273 -20.02372 -18.22546 -17.19876 -16.76355 -16.53129 -16.02944 -15.87527 -15.21334 -14.89635 -14.83104 -14.18772 -14.16498 -13.95296 -13.76276 -13.59027 -13.40396 -13.24593 -13.19751 -13.00275 -12.64154 -12.31912 -12.27843 -12.20692 -11.94934 -11.70629 -11.51529 -11.49231 -11.35359 -11.07598 -10.98190 -10.95155 -10.72679 -10.52001 -10.30389 -10.01875 -9.89333 -9.71846 -9.59016 -9.36621 -8.93497 -8.75992 -8.47460 -8.42857 -6.64939 -5.80338 -3.23108 1.16920 1.25435 2.59858 3.10881 3.37206 3.42930 3.44626 3.66286 4.18609 4.39786 4.48746 4.49201 4.64605 4.82419 4.89710 4.93199 5.00289 5.03462 5.09256 5.15116 5.15787 5.23295 5.25762 5.35002 5.37954 5.42407 5.51180 5.61875 5.62821 5.63566 5.85434 5.89119 5.92190 5.97326 6.04899 6.10188 6.12447 6.27721 6.30468 6.40192 6.44150 6.45145 6.56019 6.59524 6.65367 6.70680 6.82778 6.85331 6.99298 7.32344 7.53633 7.63015 7.78485 8.24573 8.45362 9.20751 9.84377 10.41132 11.27469 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.001969 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.321459 B =14215.115368 C =14775.124966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.083 4.083 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.059 4.059 8 C -0.105 4.105 9 C 0.516 3.484 10 O -0.535 6.535 11 N -0.697 5.697 12 C 0.070 3.930 13 H 0.130 0.870 14 C -0.183 4.183 15 C -0.097 4.097 16 C -0.104 4.104 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.149 3.851 28 C -0.098 4.098 29 C -0.103 4.103 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.402 0.598 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.018 0.982 46 H 0.090 0.910 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.063 0.937 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.608 -19.711 15.767 25.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.083 4.083 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.060 4.060 8 C -0.144 4.144 9 C 0.302 3.698 10 O -0.411 6.411 11 N -0.347 5.347 12 C -0.036 4.036 13 H 0.147 0.853 14 C -0.221 4.221 15 C -0.098 4.098 16 C -0.143 4.143 17 C 0.047 3.953 18 N -0.311 5.311 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.023 3.977 28 C -0.137 4.137 29 C -0.121 4.121 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.237 0.763 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.108 0.892 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.081 0.919 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.012 -19.728 16.119 25.476 hybrid contribution 0.861 0.898 -0.376 1.299 sum 0.873 -18.831 15.743 24.560 Atomic orbital electron populations 1.21750 0.94649 1.01553 1.02527 1.20530 0.96302 0.92625 1.02633 1.19827 0.99102 0.96289 0.93094 1.20981 1.00410 0.95071 0.97367 1.21069 0.99611 0.94883 0.97863 1.20981 1.00265 0.99472 0.92002 1.19236 0.99191 0.93962 0.93584 1.20695 0.96959 1.00471 0.96317 1.20458 0.89903 0.78788 0.80609 1.90710 1.35175 1.61545 1.53707 1.45431 1.14347 1.51106 1.23778 1.21856 0.89495 0.99324 0.92923 0.85260 1.23522 1.01760 1.01180 0.95686 1.21946 0.98431 0.89106 1.00358 1.21808 0.91789 0.98971 1.01775 1.20749 0.96113 0.88046 0.90363 1.43961 1.03926 1.02848 1.80411 1.19156 1.17326 0.83925 1.17841 0.91823 1.25044 1.01665 0.97632 0.95306 1.70027 1.31192 1.35944 1.17489 0.86386 0.79369 0.83941 0.77184 1.21048 1.21662 1.20873 1.20858 0.87948 0.96371 0.92555 1.21689 0.95804 0.95545 1.00711 1.20821 0.99324 0.94332 0.97584 0.92355 0.92489 0.92555 0.91133 0.91173 0.86371 0.86120 0.86230 0.87773 0.87945 0.76287 0.88959 0.88558 0.92090 0.93790 0.96424 0.89229 0.93607 0.96267 0.92673 0.92902 0.91864 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.89 37.16 0.37 -0.75 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.08 -0.81 5.13 -104.63 -0.54 -1.34 16 4 C -0.12 -1.13 9.70 -39.59 -0.38 -1.52 16 5 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 6 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 7 C -0.06 -0.65 4.37 -104.63 -0.46 -1.10 16 8 C -0.10 -0.99 5.83 -29.04 -0.17 -1.16 16 9 C 0.52 6.75 7.82 -10.99 -0.09 6.67 16 10 O -0.54 -9.14 15.60 5.56 0.09 -9.05 16 11 N -0.70 -8.78 5.35 -53.88 -0.29 -9.07 16 12 C 0.07 1.01 6.14 -68.01 -0.42 0.60 16 13 H 0.13 2.04 7.40 -51.93 -0.38 1.66 16 14 C -0.18 -2.64 9.86 -26.79 -0.26 -2.90 16 15 C -0.10 -1.58 1.94 -154.49 -0.30 -1.88 16 16 C -0.10 -1.86 5.37 -26.45 -0.14 -2.00 16 17 C 0.17 3.97 5.40 -3.67 -0.02 3.95 16 18 N -0.59 -14.46 2.94 -172.26 -0.51 -14.96 16 19 C -0.25 -6.84 9.54 -15.06 -0.14 -6.99 16 20 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 21 C 0.00 0.06 4.88 -17.43 -0.09 -0.03 16 22 N -0.90 -25.72 11.23 55.49 0.62 -25.09 16 23 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.15 3.09 6.52 -3.67 -0.02 3.07 16 28 C -0.10 -1.70 5.83 -26.45 -0.15 -1.85 16 29 C -0.10 -1.08 9.36 -39.59 -0.37 -1.45 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.12 0.93 8.06 -52.48 -0.42 0.50 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.40 4.30 7.12 -40.82 -0.29 4.01 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.67 6.75 -51.93 -0.35 0.32 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.31 5.93 -51.93 -0.31 2.00 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.05 1.13 7.92 -51.93 -0.41 0.71 16 50 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 51 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 52 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 416.71 15.07 6.28 6.28 Total: -1.00 -31.95 416.71 -11.86 -43.81 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.89 Total: 4.25 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -4.14 Total: -12.56 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.17 Total: -49.13 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.95 -11.86 -43.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016696417.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.046 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds