Wall clock time and date at job start Wed Apr 1 2020 02:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38262 * 119.99661 * 2 1 4 4 C 1.38219 * 119.99730 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00094 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00036 * 179.97438 * 5 4 3 7 7 C 1.38209 * 120.00221 * 0.02562 * 5 4 3 8 8 C 1.50692 * 120.00108 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47240 * 85.00023 * 8 7 5 10 10 O 1.21279 * 119.99907 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99993 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99861 * 179.97438 * 11 9 8 13 13 H 1.08997 * 115.55326 * 350.71342 * 12 11 9 14 14 C 1.53027 * 117.50042 * 136.39274 * 12 11 9 15 15 C 1.52821 * 117.50296 * 204.97682 * 12 11 9 16 16 C 1.53182 * 117.71175 * 144.90435 * 15 12 11 17 17 C 1.53343 * 108.77051 * 158.89119 * 16 15 12 18 18 N 1.46841 * 108.81841 * 51.30584 * 17 16 15 19 19 C 1.36932 * 120.38540 * 123.07844 * 18 17 16 20 20 H 1.08006 * 119.99965 * 208.95878 * 19 18 17 21 21 C 1.38819 * 119.99980 * 28.95392 * 19 18 17 22 22 N 1.31616 * 119.99677 * 17.86055 * 21 19 18 23 23 Si 1.86799 * 119.99811 * 197.85963 * 21 19 18 24 24 H 1.48490 * 109.47357 * 90.00350 * 23 21 19 25 25 H 1.48505 * 109.46849 * 210.00357 * 23 21 19 26 26 H 1.48501 * 109.47314 * 329.99747 * 23 21 19 27 27 C 1.46845 * 119.23086 * 303.10180 * 18 17 16 28 28 C 1.53176 * 117.71281 * 0.14561 * 15 12 11 29 29 C 1.38212 * 120.00173 * 180.28055 * 2 1 3 30 30 H 1.08996 * 109.47198 * 90.00124 * 1 2 3 31 31 H 1.08993 * 109.46556 * 209.99977 * 1 2 3 32 32 H 1.09001 * 109.46934 * 329.99626 * 1 2 3 33 33 H 1.07999 * 120.00205 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.99857 * 179.97438 * 4 3 2 35 35 H 1.09001 * 109.47228 * 270.02508 * 6 5 4 36 36 H 1.09008 * 109.47276 * 30.02048 * 6 5 4 37 37 H 1.09000 * 109.47272 * 150.02390 * 6 5 4 38 38 H 1.09006 * 109.46959 * 204.99448 * 8 7 5 39 39 H 1.08995 * 109.47499 * 324.99638 * 8 7 5 40 40 H 0.97000 * 120.00171 * 0.02562 * 11 9 8 41 41 H 1.08991 * 117.50938 * 214.95857 * 14 12 11 42 42 H 1.09007 * 117.50463 * 0.02562 * 14 12 11 43 43 H 1.09007 * 109.58713 * 278.67844 * 16 15 12 44 44 H 1.09008 * 109.59140 * 39.10255 * 16 15 12 45 45 H 1.09003 * 109.58024 * 291.50630 * 17 16 15 46 46 H 1.09002 * 109.69138 * 171.17237 * 17 16 15 47 47 H 0.97001 * 119.99692 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58223 * 297.10577 * 27 18 17 49 49 H 1.09004 * 109.57950 * 176.70219 * 27 18 17 50 50 H 1.09000 * 109.59029 * 320.90130 * 28 15 12 51 51 H 1.08997 * 109.59110 * 81.18498 * 28 15 12 52 52 H 1.07993 * 120.00338 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2718 0.0001 -0.0016 6 6 5.7787 0.0002 -0.0028 7 6 3.5808 -1.1968 -0.0027 8 6 4.3343 -2.5018 -0.0044 9 6 4.6933 -2.8765 1.4105 10 8 4.3696 -2.1547 2.3297 11 7 5.3741 -4.0139 1.6543 12 6 5.7236 -4.3778 3.0297 13 1 5.5402 -3.6092 3.7804 14 6 5.5223 -5.8361 3.4476 15 6 6.9333 -5.2893 3.2328 16 6 7.8014 -5.0550 4.4729 17 6 8.5918 -6.3348 4.7709 18 7 9.2762 -6.7651 3.5451 19 6 10.6358 -6.9275 3.5316 20 1 11.1882 -6.7799 2.6153 21 6 11.3041 -7.2818 4.6956 22 7 10.6375 -7.7989 5.7057 23 14 13.1496 -7.0244 4.8281 24 1 13.4226 -5.6724 5.3781 25 1 13.7291 -8.0520 5.7301 26 1 13.7641 -7.1446 3.4816 27 6 8.4858 -7.0187 2.3338 28 6 7.6934 -5.7526 1.9863 29 6 2.1981 -1.1969 -0.0059 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3632 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6582 2.1327 0.0004 34 1 4.1204 2.1328 -0.0010 35 1 6.1413 0.0011 -1.0307 36 1 6.1425 0.8898 0.5115 37 1 6.1425 -0.8902 0.5100 38 1 3.7092 -3.2818 -0.4393 39 1 5.2447 -2.3950 -0.5941 40 1 5.6334 -4.5910 0.9191 41 1 5.2070 -6.0269 4.4733 42 1 5.1302 -6.5247 2.6990 43 1 8.4932 -4.2337 4.2849 44 1 7.1651 -4.8119 5.3240 45 1 7.9088 -7.1172 5.1018 46 1 9.3278 -6.1388 5.5507 47 1 11.1045 -8.0468 6.5190 48 1 7.7961 -7.8434 2.5137 49 1 9.1523 -7.2706 1.5088 50 1 6.9854 -5.9724 1.1872 51 1 8.3775 -4.9681 1.6627 52 1 1.6582 -2.1322 -0.0100 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016805373.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:38 Heat of formation + Delta-G solvation = 18.213540 kcal Electronic energy + Delta-G solvation = -29516.487252 eV Core-core repulsion = 25674.312233 eV Total energy + Delta-G solvation = -3842.175019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.44389 -39.45085 -38.24424 -35.49219 -34.38151 -33.18066 -32.46365 -31.55869 -30.02568 -29.48808 -28.52315 -27.79981 -24.98640 -24.35303 -22.88374 -22.47188 -21.94369 -21.07898 -20.44291 -19.91964 -18.21967 -17.23109 -16.55100 -16.29716 -16.14885 -15.84005 -15.01323 -14.82991 -14.71290 -14.35202 -14.07452 -13.86970 -13.52715 -13.48510 -13.33285 -13.25212 -13.11236 -12.93037 -12.91649 -12.68915 -12.25742 -12.22699 -12.11984 -11.68843 -11.64040 -11.57743 -11.32016 -11.14012 -11.11535 -10.95630 -10.75168 -10.43865 -10.32302 -9.98906 -9.94649 -9.68010 -9.63143 -9.35917 -8.92264 -8.53532 -8.45536 -8.44181 -6.64960 -5.79443 -3.22846 1.15605 1.23893 2.58068 3.08446 3.37402 3.44604 3.45331 3.61443 4.18373 4.39291 4.49044 4.55508 4.68465 4.80959 4.82302 4.97867 4.99366 4.99769 5.14521 5.15141 5.18616 5.27365 5.33599 5.36465 5.38583 5.45510 5.49022 5.54265 5.55555 5.63440 5.74685 5.86646 5.93684 6.05125 6.06384 6.06701 6.10873 6.26758 6.28299 6.40935 6.43318 6.48596 6.58821 6.61403 6.64233 6.69604 6.83185 6.86611 6.95491 7.36250 7.51060 7.67186 7.79107 8.23072 8.45993 9.21202 9.84788 10.41418 11.28226 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023006 B = 0.002040 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.804750 B =13720.594773 C =14247.760203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.072 4.072 6 C -0.117 4.117 7 C -0.060 4.060 8 C -0.105 4.105 9 C 0.516 3.484 10 O -0.531 6.531 11 N -0.698 5.698 12 C 0.069 3.931 13 H 0.131 0.869 14 C -0.183 4.183 15 C -0.096 4.096 16 C -0.105 4.105 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.150 3.850 28 C -0.096 4.096 29 C -0.104 4.104 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.018 0.982 46 H 0.090 0.910 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.054 0.946 50 H 0.045 0.955 51 H 0.063 0.937 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.597 13.560 -13.880 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.072 4.072 6 C -0.174 4.174 7 C -0.061 4.061 8 C -0.145 4.145 9 C 0.302 3.698 10 O -0.407 6.407 11 N -0.348 5.348 12 C -0.036 4.036 13 H 0.148 0.852 14 C -0.221 4.221 15 C -0.098 4.098 16 C -0.145 4.145 17 C 0.047 3.953 18 N -0.311 5.311 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.023 3.977 28 C -0.136 4.136 29 C -0.122 4.122 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.235 0.765 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.036 0.964 46 H 0.108 0.892 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.072 0.928 50 H 0.063 0.937 51 H 0.082 0.918 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.756 14.012 -13.065 26.121 hybrid contribution 0.990 -0.272 -0.144 1.037 sum -16.766 13.739 -13.209 25.384 Atomic orbital electron populations 1.20762 0.91308 1.02749 1.02068 1.19823 0.95942 0.93093 1.00574 1.20976 0.94148 0.97376 1.01108 1.20960 0.94145 0.97338 1.01041 1.19691 0.95943 0.92562 0.99031 1.20832 0.91312 1.03271 1.01983 1.19081 0.93278 0.93089 1.00645 1.20701 1.02154 0.96484 0.95129 1.20442 0.77660 0.80747 0.90977 1.90722 1.53072 1.50837 1.46095 1.45434 1.56928 1.23872 1.08536 1.21890 1.03513 0.93703 0.84498 0.85173 1.23522 1.00322 0.95792 1.02514 1.21945 0.88700 1.00277 0.98835 1.21874 0.97535 1.01780 0.93305 1.20765 0.94432 0.90089 0.90043 1.43969 1.03245 1.77164 1.06758 1.19191 0.82133 1.40693 0.96313 0.91789 1.25056 0.97881 0.98578 0.98119 1.70034 1.35019 1.43580 1.05859 0.86306 0.85476 0.77524 0.77561 1.21426 1.21791 1.20446 1.20838 0.93439 0.92687 0.90738 1.21620 0.97927 1.00489 0.93559 1.20825 0.93210 0.97603 1.00529 0.91363 0.91621 0.91658 0.86293 0.86135 0.91130 0.91392 0.91510 0.88081 0.87782 0.76481 0.88416 0.89109 0.92152 0.93057 0.96381 0.89169 0.93617 0.96327 0.92752 0.93663 0.91800 0.86312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.01 36.01 0.36 -0.44 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.13 9.70 -39.58 -0.38 -1.52 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 5 C -0.07 -0.79 5.88 -104.63 -0.62 -1.41 16 6 C -0.12 -1.13 9.22 36.00 0.33 -0.80 16 7 C -0.06 -0.66 4.37 -104.63 -0.46 -1.12 16 8 C -0.10 -0.97 5.15 -29.04 -0.15 -1.12 16 9 C 0.52 6.61 7.05 -10.98 -0.08 6.53 16 10 O -0.53 -9.04 15.60 5.56 0.09 -8.95 16 11 N -0.70 -8.44 5.35 -53.88 -0.29 -8.73 16 12 C 0.07 1.01 6.14 -68.01 -0.42 0.59 16 13 H 0.13 2.11 7.40 -51.93 -0.38 1.72 16 14 C -0.18 -2.64 9.86 -26.80 -0.26 -2.90 16 15 C -0.10 -1.56 1.94 -154.49 -0.30 -1.86 16 16 C -0.11 -2.01 5.83 -26.46 -0.15 -2.16 16 17 C 0.17 4.05 5.41 -3.68 -0.02 4.03 16 18 N -0.59 -14.43 2.94 -172.26 -0.51 -14.93 16 19 C -0.25 -6.85 9.54 -15.06 -0.14 -7.00 16 20 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 21 C 0.00 0.07 4.88 -17.43 -0.09 -0.02 16 22 N -0.90 -25.93 11.23 55.49 0.62 -25.31 16 23 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.15 3.01 6.52 -3.67 -0.02 2.99 16 28 C -0.10 -1.56 5.37 -26.46 -0.14 -1.70 16 29 C -0.10 -1.08 9.34 -39.58 -0.37 -1.45 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 32 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.62 8.09 -51.92 -0.42 0.20 16 37 H 0.07 0.72 6.16 -51.93 -0.32 0.40 16 38 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.10 0.78 6.99 -51.93 -0.36 0.42 16 40 H 0.40 3.91 7.12 -40.82 -0.29 3.62 16 41 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 42 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 43 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 44 H 0.05 0.89 8.10 -51.92 -0.42 0.47 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 2.39 5.93 -51.93 -0.31 2.08 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.05 1.07 7.92 -51.93 -0.41 0.66 16 50 H 0.04 0.58 6.75 -51.93 -0.35 0.23 16 51 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 52 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 412.00 15.07 6.21 6.21 Total: -1.00 -32.31 412.00 -11.54 -43.85 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.73 Total: 3.82 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -3.91 Total: -12.46 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.17 Total: -48.97 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.31 -11.54 -43.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016805373.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.063 kcal (2) G-P(sol) polarization free energy of solvation -32.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds