Wall clock time and date at job start Wed Apr 1 2020 02:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38260 * 120.00057 * 2 1 4 4 C 1.38213 * 120.00145 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00134 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00216 * 179.97438 * 5 4 3 7 7 C 1.38215 * 119.99814 * 359.94965 * 5 4 3 8 8 C 1.50705 * 119.99655 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47012 * 85.00216 * 8 7 5 10 10 O 1.21277 * 120.00139 * 359.97438 * 9 8 7 11 11 N 1.34783 * 119.99869 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99819 * 179.97438 * 11 9 8 13 13 H 1.08997 * 115.56724 * 9.31308 * 12 11 9 14 14 C 1.53037 * 117.49986 * 223.60448 * 12 11 9 15 15 C 1.52844 * 59.98974 * 252.54027 * 14 12 11 16 16 C 1.53188 * 117.65610 * 252.27767 * 15 14 12 17 17 C 1.53347 * 108.76425 * 269.97426 * 16 15 14 18 18 N 1.46842 * 108.81972 * 308.69399 * 17 16 15 19 19 C 1.36940 * 120.38312 * 236.92399 * 18 17 16 20 20 H 1.08002 * 119.99948 * 28.88324 * 19 18 17 21 21 C 1.38809 * 120.00154 * 208.88483 * 19 18 17 22 22 N 1.31615 * 119.99806 * 17.84661 * 21 19 18 23 23 Si 1.86797 * 120.00100 * 197.85059 * 21 19 18 24 24 H 1.48495 * 109.47352 * 59.99686 * 23 21 19 25 25 H 1.48506 * 109.47190 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46973 * 299.99543 * 23 21 19 27 27 C 1.46841 * 119.23592 * 56.89712 * 18 17 16 28 28 C 1.53179 * 117.65815 * 107.70254 * 15 14 12 29 29 C 1.38218 * 120.00249 * 180.20690 * 2 1 3 30 30 H 1.08995 * 109.47020 * 90.00120 * 1 2 3 31 31 H 1.09000 * 109.46990 * 210.00042 * 1 2 3 32 32 H 1.09000 * 109.47426 * 329.99595 * 1 2 3 33 33 H 1.08005 * 119.99776 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.99957 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.47336 * 269.97718 * 6 5 4 36 36 H 1.09007 * 109.46783 * 29.97866 * 6 5 4 37 37 H 1.09000 * 109.47028 * 149.97432 * 6 5 4 38 38 H 1.08999 * 109.47101 * 325.00025 * 8 7 5 39 39 H 1.08999 * 109.46944 * 204.99739 * 8 7 5 40 40 H 0.97000 * 119.99617 * 359.97438 * 11 9 8 41 41 H 1.08996 * 117.49995 * 145.04818 * 14 12 11 42 42 H 1.09001 * 117.50229 * 0.02838 * 14 12 11 43 43 H 1.08999 * 109.58832 * 29.75743 * 16 15 14 44 44 H 1.09002 * 109.58719 * 150.18883 * 16 15 14 45 45 H 1.09005 * 109.57970 * 188.89781 * 17 16 15 46 46 H 1.09001 * 109.58164 * 68.49621 * 17 16 15 47 47 H 0.96999 * 120.00309 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58536 * 183.30253 * 27 18 17 49 49 H 1.09001 * 109.57959 * 62.89730 * 27 18 17 50 50 H 1.09000 * 109.58974 * 209.80454 * 28 15 14 51 51 H 1.09001 * 109.58960 * 330.22947 * 28 15 14 52 52 H 1.07997 * 119.99985 * 0.02788 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 5.7787 0.0001 -0.0028 7 6 3.5806 -1.1969 -0.0011 8 6 4.3342 -2.5020 -0.0017 9 6 4.6937 -2.8751 1.4135 10 8 4.3702 -2.1522 2.3320 11 7 5.3746 -4.0122 1.6583 12 6 5.7246 -4.3746 3.0340 13 1 5.2674 -3.7635 3.8122 14 6 7.1390 -4.9006 3.2881 15 6 5.9474 -5.8564 3.3386 16 6 5.5099 -6.3754 4.7119 17 6 6.2691 -7.6731 5.0137 18 7 6.1192 -8.5858 3.8732 19 6 5.5928 -9.8373 4.0522 20 1 4.8834 -10.0162 4.8467 21 6 5.9711 -10.8759 3.2126 22 7 7.0651 -10.7715 2.4884 23 14 4.9275 -12.4218 3.1106 24 1 3.5612 -12.0671 2.6494 25 1 5.5435 -13.3725 2.1503 26 1 4.8485 -13.0551 4.4514 27 6 6.5395 -8.1409 2.5385 28 6 5.7857 -6.8527 2.1864 29 6 2.1981 -1.1970 -0.0043 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6582 2.1327 0.0004 34 1 4.1204 2.1327 -0.0010 35 1 6.1413 0.0002 -1.0307 36 1 6.1424 0.8901 0.5109 37 1 6.1424 -0.8899 0.5108 38 1 5.2445 -2.3957 -0.5918 39 1 3.7090 -3.2823 -0.4355 40 1 5.6330 -4.5905 0.9237 41 1 7.6122 -4.6356 4.2336 42 1 7.8093 -4.9765 2.4319 43 1 5.7406 -5.6313 5.4743 44 1 4.4379 -6.5727 4.7034 45 1 5.8571 -8.1374 5.9097 46 1 7.3251 -7.4511 5.1675 47 1 7.3293 -11.4971 1.9014 48 1 6.3056 -8.9130 1.8055 49 1 7.6123 -7.9478 2.5389 50 1 4.7286 -7.0758 2.0419 51 1 6.1992 -6.4253 1.2730 52 1 1.6581 -2.1323 -0.0082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016805374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:42 Heat of formation + Delta-G solvation = 18.101476 kcal Electronic energy + Delta-G solvation = -29538.746999 eV Core-core repulsion = 25696.567120 eV Total energy + Delta-G solvation = -3842.179879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.42624 -39.43529 -38.23314 -35.48593 -34.36971 -33.19472 -32.46484 -31.44089 -30.11912 -29.48582 -28.51705 -27.76159 -24.98411 -24.34963 -22.86910 -22.46209 -21.94949 -21.07072 -20.42380 -19.89508 -18.22193 -17.18487 -16.62400 -16.28667 -16.10000 -15.77859 -14.94772 -14.87040 -14.74452 -14.33747 -14.10109 -13.85751 -13.57703 -13.46775 -13.33458 -13.23126 -13.05475 -12.95820 -12.87026 -12.61483 -12.28539 -12.22766 -12.11012 -11.70721 -11.67149 -11.50204 -11.35540 -11.13267 -11.10176 -10.95493 -10.72698 -10.51937 -10.30340 -10.01561 -9.88795 -9.71812 -9.58967 -9.36548 -8.90545 -8.52699 -8.47424 -8.42456 -6.64964 -5.80319 -3.23115 1.16872 1.25369 2.59870 3.10887 3.37216 3.42918 3.44632 3.62942 4.18520 4.41579 4.48833 4.57069 4.69756 4.81848 4.84375 4.98692 5.00196 5.02564 5.15128 5.15943 5.20588 5.29781 5.35740 5.37798 5.38031 5.42621 5.51200 5.54871 5.57312 5.63195 5.73710 5.87556 5.95198 6.04933 6.05001 6.10282 6.12589 6.27742 6.28015 6.42781 6.44309 6.49397 6.56104 6.59736 6.65499 6.70770 6.82811 6.87878 6.99341 7.32355 7.53821 7.62988 7.78479 8.24967 8.45359 9.20765 9.84392 10.41139 11.27509 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017519 B = 0.002144 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.846880 B =13054.761577 C =13695.962473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.116 4.116 7 C -0.059 4.059 8 C -0.106 4.106 9 C 0.516 3.484 10 O -0.533 6.533 11 N -0.697 5.697 12 C 0.070 3.930 13 H 0.130 0.870 14 C -0.183 4.183 15 C -0.097 4.097 16 C -0.098 4.098 17 C 0.149 3.851 18 N -0.590 5.590 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.173 3.827 28 C -0.104 4.104 29 C -0.103 4.103 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.402 0.598 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.052 0.948 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.019 0.981 47 H 0.254 0.746 48 H 0.090 0.910 49 H 0.018 0.982 50 H 0.060 0.940 51 H 0.043 0.957 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.791 22.122 -8.119 24.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.074 4.074 6 C -0.173 4.173 7 C -0.060 4.060 8 C -0.145 4.145 9 C 0.303 3.697 10 O -0.409 6.409 11 N -0.347 5.347 12 C -0.036 4.036 13 H 0.147 0.853 14 C -0.221 4.221 15 C -0.098 4.098 16 C -0.137 4.137 17 C 0.023 3.977 18 N -0.312 5.312 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.047 3.953 28 C -0.143 4.143 29 C -0.121 4.121 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.237 0.763 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.037 0.963 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.036 0.964 50 H 0.079 0.921 51 H 0.062 0.938 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.949 22.506 -7.564 24.477 hybrid contribution -0.249 -1.111 -0.449 1.224 sum -6.198 21.395 -8.014 23.673 Atomic orbital electron populations 1.20769 0.91280 1.02794 1.02114 1.19832 0.95978 0.93076 1.00424 1.20971 0.94144 0.97371 1.01173 1.20938 0.94146 0.97271 1.01175 1.19670 0.95867 0.92571 0.99306 1.20818 0.91439 1.03095 1.01910 1.19086 0.93300 0.93074 1.00531 1.20709 1.02159 0.96564 0.95118 1.20433 0.77606 0.80716 0.90974 1.90712 1.53200 1.50877 1.46147 1.45437 1.57109 1.23567 1.08592 1.21872 0.99087 0.97998 0.84637 0.85255 1.23521 0.91401 1.04147 1.03057 1.21961 1.00140 0.89266 0.98481 1.21688 1.00801 0.98639 0.92612 1.20858 0.96167 0.89325 0.91378 1.43962 1.73281 1.12270 1.01654 1.19156 1.18016 0.85267 1.15813 0.91828 1.25039 0.96131 0.97377 1.01081 1.70022 1.21706 1.32847 1.30072 0.86389 0.80091 0.82855 0.77570 1.21050 1.21654 1.20867 1.20748 0.94173 0.91926 0.88422 1.21804 1.01533 0.97392 0.93602 1.20858 0.93252 0.97697 1.00309 0.91328 0.91541 0.91663 0.86304 0.86194 0.91188 0.91486 0.91596 0.87851 0.87906 0.76306 0.88567 0.88964 0.92902 0.91872 0.92676 0.96263 0.93605 0.89230 0.96423 0.92098 0.93794 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.00 0.36 -0.50 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.15 9.70 -39.58 -0.38 -1.54 16 4 C -0.12 -1.18 9.70 -39.59 -0.38 -1.56 16 5 C -0.07 -0.80 5.88 -104.62 -0.62 -1.42 16 6 C -0.12 -1.05 9.22 36.01 0.33 -0.72 16 7 C -0.06 -0.67 4.37 -104.62 -0.46 -1.13 16 8 C -0.11 -1.03 5.15 -29.03 -0.15 -1.18 16 9 C 0.52 6.78 7.05 -10.98 -0.08 6.70 16 10 O -0.53 -9.10 15.60 5.56 0.09 -9.01 16 11 N -0.70 -8.78 5.35 -53.83 -0.29 -9.06 16 12 C 0.07 1.01 6.14 -67.95 -0.42 0.59 16 13 H 0.13 2.04 7.40 -51.93 -0.38 1.66 16 14 C -0.18 -2.62 9.86 -26.79 -0.26 -2.89 16 15 C -0.10 -1.58 1.94 -154.44 -0.30 -1.88 16 16 C -0.10 -1.70 5.83 -26.45 -0.15 -1.85 16 17 C 0.15 3.09 6.51 -3.68 -0.02 3.07 16 18 N -0.59 -14.47 2.94 -172.26 -0.51 -14.98 16 19 C -0.25 -6.84 9.54 -15.06 -0.14 -6.99 16 20 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 21 C 0.00 0.06 4.88 -17.43 -0.09 -0.02 16 22 N -0.90 -25.71 11.23 55.49 0.62 -25.09 16 23 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.17 3.97 5.40 -3.68 -0.02 3.95 16 28 C -0.10 -1.86 5.37 -26.46 -0.14 -2.00 16 29 C -0.10 -1.14 9.34 -39.58 -0.37 -1.51 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.07 0.66 6.16 -51.93 -0.32 0.34 16 38 H 0.10 0.79 6.99 -51.93 -0.36 0.42 16 39 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 40 H 0.40 4.31 7.12 -40.82 -0.29 4.01 16 41 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.09 2.31 5.93 -51.93 -0.31 2.00 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 51 H 0.04 0.67 6.75 -51.93 -0.35 0.31 16 52 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 412.01 15.07 6.21 6.21 Total: -1.00 -32.07 412.01 -11.54 -43.61 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -8.73 Total: 4.36 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -3.91 Total: -12.43 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.17 Total: -49.13 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.07 -11.54 -43.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016805374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.710 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds