Wall clock time and date at job start Wed Apr 1 2020 02:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38237 * 120.00168 * 2 1 4 4 C 1.38230 * 120.00336 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.00302 * 180.02562 * 4 3 2 6 6 C 1.38240 * 119.99887 * 0.02562 * 4 3 2 7 7 C 1.38237 * 119.99837 * 359.95912 * 6 4 3 8 8 C 1.50700 * 120.00110 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47214 * 89.99636 * 8 7 6 10 10 O 1.21285 * 120.00114 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00604 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00365 * 179.72785 * 11 9 8 13 13 H 1.08993 * 115.55372 * 9.57001 * 12 11 9 14 14 C 1.53029 * 117.49957 * 223.88124 * 12 11 9 15 15 C 1.52817 * 117.50072 * 155.30120 * 12 11 9 16 16 C 1.53182 * 117.71674 * 359.85498 * 15 12 11 17 17 C 1.53343 * 108.77270 * 158.89273 * 16 15 12 18 18 N 1.46841 * 108.82055 * 51.30524 * 17 16 15 19 19 C 1.36941 * 120.38383 * 123.11868 * 18 17 16 20 20 H 1.08002 * 119.99903 * 208.88535 * 19 18 17 21 21 C 1.38813 * 119.99659 * 28.89152 * 19 18 17 22 22 N 1.31618 * 120.00309 * 17.85604 * 21 19 18 23 23 Si 1.86799 * 119.99507 * 197.85989 * 21 19 18 24 24 H 1.48499 * 109.47329 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47306 * 120.00008 * 23 21 19 26 26 H 1.48501 * 109.47146 * 239.99530 * 23 21 19 27 27 C 1.46845 * 119.23299 * 303.10880 * 18 17 16 28 28 C 1.53187 * 117.71276 * 215.10014 * 15 12 11 29 29 C 1.38234 * 119.99873 * 180.21022 * 2 1 3 30 30 H 1.09000 * 109.46925 * 90.00135 * 1 2 3 31 31 H 1.08999 * 109.46925 * 210.00204 * 1 2 3 32 32 H 1.09002 * 109.47104 * 330.00052 * 1 2 3 33 33 H 1.08002 * 119.99515 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.47372 * 270.02035 * 5 4 3 35 35 H 1.09001 * 109.47298 * 30.01818 * 5 4 3 36 36 H 1.09001 * 109.47468 * 150.02122 * 5 4 3 37 37 H 1.07998 * 119.99961 * 179.97438 * 6 4 3 38 38 H 1.09000 * 109.47120 * 329.99907 * 8 7 6 39 39 H 1.08993 * 109.47382 * 210.00199 * 8 7 6 40 40 H 0.97002 * 119.99546 * 359.97438 * 11 9 8 41 41 H 1.08997 * 117.50884 * 359.97438 * 14 12 11 42 42 H 1.09004 * 117.50315 * 145.01643 * 14 12 11 43 43 H 1.09002 * 109.58691 * 278.67915 * 16 15 12 44 44 H 1.09003 * 109.58728 * 39.10916 * 16 15 12 45 45 H 1.09003 * 109.58399 * 291.50789 * 17 16 15 46 46 H 1.09002 * 109.58399 * 171.10761 * 17 16 15 47 47 H 0.97000 * 119.99819 * 180.02562 * 22 21 19 48 48 H 1.09007 * 109.57765 * 297.09860 * 27 18 17 49 49 H 1.09000 * 109.58377 * 176.69948 * 27 18 17 50 50 H 1.09000 * 109.58484 * 320.89684 * 28 15 12 51 51 H 1.08995 * 109.59252 * 81.32739 * 28 15 12 52 52 H 1.07998 * 120.00603 * 0.04299 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5022 0.0011 6 6 4.2717 0.0000 0.0005 7 6 3.5805 -1.1972 0.0009 8 6 4.3340 -2.5023 0.0003 9 6 4.5861 -2.9374 1.4208 10 8 4.1923 -2.2552 2.3430 11 7 5.2492 -4.0847 1.6667 12 6 5.4995 -4.5047 3.0477 13 1 4.9829 -3.9285 3.8153 14 6 6.8946 -5.0370 3.3826 15 6 5.7075 -5.9966 3.3049 16 6 5.6361 -6.9435 2.1029 17 6 6.3685 -8.2439 2.4549 18 7 5.8536 -8.7459 3.7352 19 6 5.3227 -10.0053 3.8223 20 1 4.5580 -10.2195 4.5543 21 6 5.7674 -11.0064 2.9697 22 7 6.9111 -10.8686 2.3330 23 14 4.7427 -12.5491 2.7262 24 1 3.5101 -12.4598 3.5496 25 1 4.3733 -12.6770 1.2936 26 1 5.5303 -13.7373 3.1422 27 6 5.9147 -7.8821 4.9210 28 6 5.1729 -6.5743 4.6190 29 6 2.1982 -1.1971 -0.0044 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6582 2.1324 -0.0004 34 1 4.5158 2.8173 -1.0264 35 1 3.7449 3.2617 0.5152 36 1 5.2864 2.3717 0.5150 37 1 5.3517 0.0000 0.0005 38 1 5.2861 -2.3719 -0.5142 39 1 3.7446 -3.2618 -0.5133 40 1 5.5639 -4.6306 0.9292 41 1 7.6260 -5.0751 2.5754 42 1 7.2958 -4.8109 4.3705 43 1 4.5937 -7.1623 1.8715 44 1 6.1137 -6.4769 1.2413 45 1 7.4374 -8.0491 2.5424 46 1 6.1930 -8.9848 1.6749 47 1 7.2216 -11.5681 1.7370 48 1 6.9555 -7.6646 5.1613 49 1 5.4406 -8.3847 5.7641 50 1 5.3431 -5.8627 5.4270 51 1 4.1056 -6.7734 4.5233 52 1 1.6583 -2.1325 -0.0085 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016806228.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:51 Heat of formation + Delta-G solvation = 15.897167 kcal Electronic energy + Delta-G solvation = -29207.783738 eV Core-core repulsion = 25365.508274 eV Total energy + Delta-G solvation = -3842.275465 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.31147 -39.45741 -38.26950 -35.48600 -33.70750 -33.69354 -33.08105 -31.48430 -30.11929 -28.81745 -28.07436 -27.16886 -26.88225 -24.35263 -22.68424 -22.43862 -21.30311 -20.92696 -20.54962 -20.06608 -18.22365 -17.18584 -16.62864 -16.46324 -16.12402 -15.86604 -14.88120 -14.80404 -14.62779 -14.32608 -14.09194 -13.89071 -13.56376 -13.45382 -13.36212 -13.20000 -13.14684 -13.00752 -12.77126 -12.67812 -12.51955 -12.27288 -11.94567 -11.70893 -11.66292 -11.49904 -11.35715 -11.20741 -11.15926 -10.96519 -10.74760 -10.49833 -10.28324 -10.01330 -9.88348 -9.70425 -9.58911 -9.36220 -8.75402 -8.68380 -8.48189 -8.42644 -6.65142 -5.80593 -3.23337 1.17838 1.23549 2.60480 3.10487 3.35308 3.43801 3.46214 3.63215 4.18889 4.40484 4.48595 4.54838 4.59068 4.82947 4.94705 5.00539 5.02670 5.07362 5.12833 5.15648 5.16137 5.30383 5.31853 5.36603 5.37898 5.38860 5.40245 5.51270 5.61505 5.63066 5.64032 5.87804 5.96553 6.01503 6.05158 6.10355 6.12826 6.27804 6.37119 6.37533 6.44227 6.47374 6.56128 6.59788 6.65583 6.70791 6.82854 6.87423 6.99344 7.32356 7.54135 7.63084 7.78970 8.25214 8.45068 9.20562 9.84195 10.40870 11.27199 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018519 B = 0.002022 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.588669 B =13847.549756 C =14451.464145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 C -0.123 4.123 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.055 4.055 8 C -0.104 4.104 9 C 0.516 3.484 10 O -0.535 6.535 11 N -0.697 5.697 12 C 0.070 3.930 13 H 0.130 0.870 14 C -0.183 4.183 15 C -0.097 4.097 16 C -0.104 4.104 17 C 0.173 3.827 18 N -0.590 5.590 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.902 5.902 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.149 3.851 28 C -0.098 4.098 29 C -0.110 4.110 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.402 0.598 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.060 0.940 44 H 0.044 0.956 45 H 0.018 0.982 46 H 0.090 0.910 47 H 0.253 0.747 48 H 0.019 0.981 49 H 0.055 0.945 50 H 0.052 0.948 51 H 0.063 0.937 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 23.264 -7.575 25.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.129 4.129 7 C -0.055 4.055 8 C -0.144 4.144 9 C 0.302 3.698 10 O -0.411 6.411 11 N -0.347 5.347 12 C -0.036 4.036 13 H 0.147 0.853 14 C -0.222 4.222 15 C -0.098 4.098 16 C -0.143 4.143 17 C 0.047 3.953 18 N -0.312 5.312 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.023 3.977 28 C -0.137 4.137 29 C -0.128 4.128 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.136 0.864 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.237 0.763 41 H 0.110 0.890 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.036 0.964 46 H 0.108 0.892 47 H 0.063 0.937 48 H 0.037 0.963 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.081 0.919 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.052 23.633 -7.011 25.383 hybrid contribution -0.128 -1.159 -0.536 1.283 sum -6.180 22.475 -7.547 24.500 Atomic orbital electron populations 1.20783 0.91231 1.02851 1.02171 1.19837 0.95973 0.93015 0.99456 1.20859 0.93492 0.97410 1.02343 1.19823 0.93811 0.95148 0.99602 1.20774 0.99968 0.94090 1.02130 1.20813 0.99445 0.91443 1.01178 1.19212 0.93489 0.93459 0.99354 1.20690 1.02349 0.96369 0.94993 1.20455 0.77601 0.80587 0.91108 1.90712 1.50554 1.53672 1.46176 1.45430 1.57589 1.23581 1.08074 1.21856 0.99846 0.97434 0.84452 0.85257 1.23522 0.91641 1.04181 1.02823 1.21944 1.00036 0.89130 0.98724 1.21803 1.01474 0.97719 0.93329 1.20748 0.93582 0.91272 0.89688 1.43982 1.71536 1.12614 1.03059 1.19245 1.14302 0.85853 1.18681 0.91721 1.25048 0.95773 0.97418 1.01482 1.70045 1.18362 1.34047 1.32179 0.86256 0.79931 0.83118 0.77677 1.20244 1.21571 1.21757 1.20861 0.96446 0.89744 0.90692 1.21687 1.00427 0.98458 0.93170 1.20843 0.93354 0.97652 1.00964 0.91254 0.91461 0.91628 0.86353 0.91288 0.91635 0.91545 0.86371 0.87918 0.87790 0.76291 0.88964 0.88560 0.92084 0.93784 0.96421 0.89221 0.93719 0.96263 0.92671 0.92896 0.91859 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.08 -0.85 5.88 -104.62 -0.62 -1.46 16 3 C -0.12 -1.21 9.36 -39.58 -0.37 -1.58 16 4 C -0.08 -0.84 5.88 -104.63 -0.62 -1.45 16 5 C -0.11 -0.82 10.01 36.00 0.36 -0.46 16 6 C -0.11 -1.19 9.36 -39.58 -0.37 -1.56 16 7 C -0.05 -0.61 4.37 -104.62 -0.46 -1.07 16 8 C -0.10 -1.00 5.83 -29.04 -0.17 -1.17 16 9 C 0.52 6.83 7.82 -10.99 -0.09 6.74 16 10 O -0.53 -9.23 15.60 5.55 0.09 -9.14 16 11 N -0.70 -8.84 5.35 -53.89 -0.29 -9.13 16 12 C 0.07 1.02 6.14 -68.01 -0.42 0.60 16 13 H 0.13 2.05 7.40 -51.93 -0.38 1.67 16 14 C -0.18 -2.65 9.86 -26.80 -0.26 -2.91 16 15 C -0.10 -1.58 1.94 -154.49 -0.30 -1.88 16 16 C -0.10 -1.86 5.37 -26.46 -0.14 -2.00 16 17 C 0.17 3.97 5.40 -3.68 -0.02 3.95 16 18 N -0.59 -14.48 2.94 -172.26 -0.51 -14.98 16 19 C -0.25 -6.80 9.54 -15.06 -0.14 -6.94 16 20 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.03 4.88 -17.43 -0.09 -0.05 16 22 N -0.90 -25.74 11.23 55.49 0.62 -25.12 16 23 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.15 3.09 6.51 -3.67 -0.02 3.07 16 28 C -0.10 -1.70 5.83 -26.45 -0.15 -1.86 16 29 C -0.11 -1.22 9.36 -39.58 -0.37 -1.59 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 36 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 37 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 40 H 0.40 4.33 7.12 -40.82 -0.29 4.03 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.67 6.75 -51.93 -0.35 0.32 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.32 5.93 -51.93 -0.31 2.01 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 49 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 50 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 51 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 52 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 416.63 15.07 6.28 6.28 Total: -1.00 -32.27 416.63 -11.60 -43.87 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -8.88 Total: 3.98 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -3.88 Total: -12.16 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.17 Total: -49.23 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.27 -11.60 -43.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016806228.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.770 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds