Wall clock time and date at job start Wed Apr 1 2020 03:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50704 * 109.46770 * 2 1 4 4 C 1.38238 * 120.00108 * 90.00280 * 3 2 1 5 5 C 1.38230 * 119.99871 * 180.02562 * 4 3 2 6 6 C 1.38233 * 120.00567 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00316 * 179.69907 * 6 5 4 8 8 C 1.50699 * 109.46879 * 89.99840 * 7 6 5 9 9 O 1.21276 * 120.00111 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99744 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99757 * 179.97438 * 10 8 7 12 12 H 1.08993 * 115.55329 * 350.70982 * 11 10 8 13 13 C 1.53030 * 117.49895 * 136.39406 * 11 10 8 14 14 C 1.52820 * 117.50162 * 204.97294 * 11 10 8 15 15 C 1.53184 * 117.71122 * 144.89910 * 14 11 10 16 16 C 1.53352 * 108.76919 * 158.89254 * 15 14 11 17 17 N 1.46841 * 108.81695 * 51.30701 * 16 15 14 18 18 C 1.36933 * 120.38338 * 123.11527 * 17 16 15 19 19 H 1.07999 * 120.00519 * 208.88203 * 18 17 16 20 20 C 1.38813 * 119.99685 * 28.88923 * 18 17 16 21 21 N 1.31623 * 120.00027 * 17.86250 * 20 18 17 22 22 Si 1.86800 * 120.00010 * 197.85699 * 20 18 17 23 23 H 1.48499 * 109.46895 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47031 * 120.00146 * 22 20 18 25 25 H 1.48506 * 109.47213 * 240.00097 * 22 20 18 26 26 C 1.46853 * 119.23268 * 303.10647 * 17 16 15 27 27 C 1.53187 * 117.71131 * 0.14750 * 14 11 10 28 28 C 1.38237 * 119.99541 * 359.97438 * 6 5 4 29 29 C 1.38235 * 119.99923 * 270.02318 * 3 2 1 30 30 H 1.09005 * 109.46515 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47117 * 299.99539 * 1 2 3 32 32 H 1.08997 * 109.47486 * 60.00029 * 1 2 3 33 33 H 1.09002 * 109.47117 * 240.00461 * 2 1 3 34 34 H 1.08997 * 109.47486 * 119.99971 * 2 1 3 35 35 H 1.08002 * 119.99659 * 359.97438 * 4 3 2 36 36 H 1.08007 * 119.99672 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47155 * 210.00152 * 7 6 5 38 38 H 1.08998 * 109.46669 * 330.00284 * 7 6 5 39 39 H 0.96994 * 119.99930 * 0.02562 * 10 8 7 40 40 H 1.09001 * 117.50465 * 214.95828 * 13 11 10 41 41 H 1.09000 * 117.50479 * 359.97217 * 13 11 10 42 42 H 1.08996 * 109.59035 * 278.68200 * 15 14 11 43 43 H 1.09007 * 109.58532 * 39.11081 * 15 14 11 44 44 H 1.09006 * 109.57848 * 291.51413 * 16 15 14 45 45 H 1.08993 * 109.58155 * 171.10834 * 16 15 14 46 46 H 0.96995 * 120.00127 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.57592 * 297.09964 * 26 17 16 48 48 H 1.09002 * 109.57659 * 176.69880 * 26 17 16 49 49 H 1.08996 * 109.58488 * 320.89437 * 27 14 11 50 50 H 1.08991 * 109.58898 * 81.32884 * 27 14 11 51 51 H 1.08001 * 119.99702 * 179.97438 * 28 6 5 52 52 H 1.07997 * 120.00184 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1972 5 6 2.7229 3.3760 1.1971 6 6 2.9522 4.0281 0.0000 7 6 3.4474 5.4514 0.0000 8 6 4.9544 5.4589 0.0028 9 8 5.5660 4.4116 0.0041 10 7 5.6224 6.6295 0.0027 11 6 7.0874 6.6367 0.0060 12 1 7.5620 5.6689 0.1670 13 6 7.7912 7.6219 -0.9300 14 6 7.7857 7.8697 0.5782 15 6 9.0982 7.6563 1.3387 16 6 9.8779 8.9767 1.3575 17 7 8.9908 10.0438 1.8376 18 6 9.3370 10.7928 2.9305 19 1 8.5686 11.2197 3.5579 20 6 10.6755 11.0036 3.2317 21 7 11.5965 10.8018 2.3132 22 14 11.1698 11.5735 4.9405 23 1 9.9558 11.7252 5.7822 24 1 12.0750 10.5693 5.5547 25 1 11.8716 12.8787 4.8433 26 6 7.7283 10.2986 1.1322 27 6 6.9049 9.0051 1.1091 28 6 2.7218 3.3764 -1.1971 29 6 2.2622 2.0727 -1.1972 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.0823 1.5635 2.1325 36 1 2.9025 3.8853 2.1325 37 1 3.0831 5.9629 -0.8909 38 1 3.0799 5.9639 0.8890 39 1 5.1333 7.4670 0.0013 40 1 8.7291 7.3023 -1.3842 41 1 7.1642 8.2642 -1.5484 42 1 8.8819 7.3451 2.3607 43 1 9.6899 6.8896 0.8384 44 1 10.2210 9.2127 0.3501 45 1 10.7345 8.8856 2.0253 46 1 12.5318 10.9494 2.5235 47 1 7.9383 10.6163 0.1109 48 1 7.1703 11.0775 1.6518 49 1 6.0414 9.1332 0.4565 50 1 6.5706 8.7666 2.1187 51 1 2.9005 3.8860 -2.1324 52 1 2.0814 1.5639 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016859777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:11 Heat of formation + Delta-G solvation = 17.386308 kcal Electronic energy + Delta-G solvation = -28930.936332 eV Core-core repulsion = 25088.725441 eV Total energy + Delta-G solvation = -3842.210891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.29743 -39.42808 -38.28391 -35.51527 -34.82775 -33.15922 -31.76899 -31.25950 -31.09530 -30.00145 -28.36023 -27.38109 -24.35484 -23.78220 -22.92765 -22.47933 -22.08791 -21.09014 -20.58629 -20.20885 -18.22815 -17.24584 -16.68247 -16.35888 -16.07916 -15.85906 -15.27830 -14.88670 -14.82220 -14.18192 -14.06721 -13.97471 -13.94569 -13.52725 -13.52444 -13.37244 -13.15253 -13.08315 -12.73246 -12.33561 -12.28260 -12.23044 -11.94615 -11.64246 -11.58784 -11.48468 -11.31499 -11.09306 -11.04244 -10.96245 -10.74576 -10.43772 -10.31479 -9.98769 -9.94551 -9.67254 -9.63050 -9.35788 -9.05838 -8.69381 -8.45766 -8.44102 -6.64638 -5.79437 -3.22631 1.12452 1.26832 2.58339 3.08506 3.36492 3.44809 3.46758 3.64429 4.18518 4.38704 4.49182 4.53445 4.57094 4.76801 4.82580 4.83932 4.99335 5.02571 5.06511 5.14818 5.15500 5.20780 5.21231 5.32145 5.38906 5.41383 5.49252 5.55593 5.62971 5.63507 5.78288 5.86503 5.90780 5.91052 6.06472 6.06727 6.10811 6.23228 6.28606 6.41511 6.43299 6.43414 6.58859 6.61487 6.64442 6.69662 6.83029 6.84066 6.95700 7.36625 7.51213 7.67123 7.79442 8.23035 8.45983 9.21315 9.84961 10.41509 11.28272 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.001789 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.308792 B =15645.820622 C =16020.102273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.067 4.067 7 C -0.103 4.103 8 C 0.515 3.485 9 O -0.534 6.534 10 N -0.698 5.698 11 C 0.069 3.931 12 H 0.131 0.869 13 C -0.183 4.183 14 C -0.096 4.096 15 C -0.106 4.106 16 C 0.173 3.827 17 N -0.589 5.589 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.150 3.850 27 C -0.097 4.097 28 C -0.102 4.102 29 C -0.118 4.118 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.400 0.600 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.090 0.910 46 H 0.253 0.747 47 H 0.019 0.981 48 H 0.054 0.946 49 H 0.045 0.955 50 H 0.064 0.936 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.416 -15.995 -7.308 27.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.068 4.068 7 C -0.143 4.143 8 C 0.301 3.699 9 O -0.410 6.410 10 N -0.347 5.347 11 C -0.036 4.036 12 H 0.148 0.852 13 C -0.222 4.222 14 C -0.098 4.098 15 C -0.145 4.145 16 C 0.047 3.953 17 N -0.311 5.311 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.023 3.977 27 C -0.136 4.136 28 C -0.120 4.120 29 C -0.136 4.136 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.235 0.765 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.036 0.964 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.810 -16.720 -7.284 27.671 hybrid contribution 0.218 0.812 0.734 1.116 sum -20.592 -15.908 -6.550 26.833 Atomic orbital electron populations 1.21746 0.94773 1.01610 1.02194 1.20543 0.96096 0.92795 1.02843 1.19876 0.99240 0.96104 0.93261 1.20954 1.00292 0.94756 0.97490 1.20972 0.98617 0.94909 0.97415 1.19239 0.99288 0.94644 0.93619 1.20687 0.92600 0.95721 1.05304 1.20483 0.89551 0.83718 0.76114 1.90718 1.69863 1.31534 1.48848 1.45432 1.06366 1.08399 1.74548 1.21890 0.79249 0.96835 1.05640 0.85175 1.23523 1.02235 1.02587 0.93814 1.21950 0.98256 0.95248 0.94331 1.21881 0.93352 1.00669 0.98626 1.20764 0.92871 0.83494 0.98157 1.43977 1.18841 1.36149 1.32174 1.19224 0.90981 1.27064 1.01035 0.91766 1.25047 0.96741 0.99960 0.97849 1.70043 1.00342 1.52750 1.31360 0.86260 0.78298 0.77914 0.84521 1.20267 1.21548 1.21744 1.20842 0.88349 0.93125 0.95407 1.21625 0.96137 0.96181 0.99700 1.20946 0.98836 0.94910 0.97316 1.20939 1.00415 0.94755 0.97454 0.92482 0.92564 0.92585 0.91103 0.91073 0.86216 0.86187 0.87989 0.87872 0.76463 0.88410 0.89102 0.92145 0.93045 0.96365 0.89181 0.93676 0.96327 0.92751 0.93627 0.91780 0.86292 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.09 -0.60 6.06 -27.88 -0.17 -0.77 16 3 C -0.08 -0.79 5.13 -104.62 -0.54 -1.32 16 4 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 5 C -0.10 -1.06 9.70 -39.59 -0.38 -1.44 16 6 C -0.07 -0.71 4.37 -104.62 -0.46 -1.17 16 7 C -0.10 -0.92 5.83 -29.03 -0.17 -1.09 16 8 C 0.52 6.60 7.82 -10.99 -0.09 6.51 16 9 O -0.53 -9.12 15.60 5.56 0.09 -9.04 16 10 N -0.70 -8.47 5.35 -53.88 -0.29 -8.75 16 11 C 0.07 1.01 6.14 -68.01 -0.42 0.60 16 12 H 0.13 2.12 7.40 -51.93 -0.38 1.73 16 13 C -0.18 -2.65 9.86 -26.80 -0.26 -2.91 16 14 C -0.10 -1.58 1.94 -154.49 -0.30 -1.87 16 15 C -0.11 -2.02 5.83 -26.45 -0.15 -2.18 16 16 C 0.17 4.07 5.40 -3.67 -0.02 4.05 16 17 N -0.59 -14.46 2.94 -172.25 -0.51 -14.96 16 18 C -0.25 -6.86 9.54 -15.06 -0.14 -7.01 16 19 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.07 4.88 -17.43 -0.09 -0.01 16 21 N -0.90 -25.95 11.23 55.49 0.62 -25.32 16 22 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 26 C 0.15 3.02 6.52 -3.67 -0.02 2.99 16 27 C -0.10 -1.57 5.37 -26.45 -0.14 -1.72 16 28 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 29 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.10 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.10 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.40 3.91 7.12 -40.82 -0.29 3.62 16 40 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 2.39 5.93 -51.93 -0.31 2.08 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.05 1.07 7.92 -51.93 -0.41 0.66 16 49 H 0.05 0.59 6.75 -51.93 -0.35 0.24 16 50 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 52 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 416.70 15.07 6.28 6.28 Total: -1.00 -32.32 416.70 -11.86 -44.19 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.89 Total: 3.38 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -4.14 Total: -12.28 kcal Atomic # 7 Polarization: -48.87 SS G_CDS: -0.17 Total: -49.04 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.32 -11.86 -44.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016859777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.573 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds