Wall clock time and date at job start Wed Apr 1 2020 03:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.47015 * 2 1 4 4 C 1.38236 * 120.00235 * 89.99758 * 3 2 1 5 5 C 1.38232 * 120.00204 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.00078 * 359.96503 * 5 4 3 7 7 C 1.50703 * 120.00202 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47386 * 89.99497 * 7 6 5 9 9 O 1.21289 * 120.00086 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00434 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00555 * 180.02562 * 10 8 7 12 12 H 1.08998 * 115.56468 * 9.28690 * 11 10 8 13 13 C 1.53032 * 117.50461 * 223.58626 * 11 10 8 14 14 C 1.52819 * 117.50650 * 154.99763 * 11 10 8 15 15 C 1.53181 * 117.71619 * 215.10222 * 14 11 10 16 16 C 1.53347 * 108.76987 * 201.11637 * 15 14 11 17 17 N 1.46845 * 108.81309 * 308.68997 * 16 15 14 18 18 C 1.36939 * 120.37920 * 236.87244 * 17 16 15 19 19 H 1.08005 * 119.99625 * 150.77889 * 18 17 16 20 20 C 1.38804 * 120.00017 * 330.77651 * 18 17 16 21 21 N 1.31622 * 120.00247 * 342.52028 * 20 18 17 22 22 Si 1.86810 * 119.99877 * 162.51981 * 20 18 17 23 23 H 1.48499 * 109.47137 * 59.99982 * 22 20 18 24 24 H 1.48496 * 109.47053 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46625 * 300.00079 * 22 20 18 26 26 C 1.46839 * 119.23743 * 57.15175 * 17 16 15 27 27 C 1.53184 * 117.71227 * 359.86359 * 14 11 10 28 28 C 1.38234 * 120.00405 * 0.26471 * 6 5 4 29 29 C 1.38234 * 120.00186 * 270.01940 * 3 2 1 30 30 H 1.08999 * 109.47223 * 300.00044 * 1 2 3 31 31 H 1.09002 * 109.46644 * 60.00037 * 1 2 3 32 32 H 1.09002 * 109.46891 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47223 * 239.99956 * 2 1 3 34 34 H 1.08994 * 109.46937 * 120.00109 * 2 1 3 35 35 H 1.07998 * 119.99766 * 0.02562 * 4 3 2 36 36 H 1.08006 * 120.00021 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.47044 * 329.99492 * 7 6 5 38 38 H 1.09000 * 109.47237 * 209.99850 * 7 6 5 39 39 H 0.97005 * 119.99697 * 359.97438 * 10 8 7 40 40 H 1.08995 * 117.51032 * 145.04420 * 13 11 10 41 41 H 1.09003 * 117.49958 * 359.97438 * 13 11 10 42 42 H 1.09000 * 109.58652 * 81.32451 * 15 14 11 43 43 H 1.09003 * 109.70293 * 320.96822 * 15 14 11 44 44 H 1.08997 * 109.58011 * 188.89460 * 16 15 14 45 45 H 1.09001 * 109.69419 * 68.55564 * 16 15 14 46 46 H 0.97001 * 120.00021 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.58254 * 62.64867 * 26 17 16 48 48 H 1.08998 * 109.58004 * 183.05220 * 26 17 16 49 49 H 1.09001 * 109.58807 * 278.67171 * 27 14 11 50 50 H 1.09002 * 109.58899 * 38.95125 * 27 14 11 51 51 H 1.07998 * 120.00456 * 179.72814 * 28 6 5 52 52 H 1.08005 * 120.00057 * 0.02562 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7229 3.3759 1.1971 6 6 2.9535 4.0275 0.0000 7 6 3.4559 5.4483 0.0000 8 6 4.9628 5.4484 0.0004 9 8 5.5694 4.3981 0.0012 10 7 5.6367 6.6156 0.0010 11 6 7.1016 6.6157 0.0008 12 1 7.5721 5.6455 -0.1585 13 6 7.8084 7.5984 0.9370 14 6 7.8073 7.8445 -0.5715 15 6 9.1202 7.6238 -1.3290 16 6 9.9065 8.9402 -1.3476 17 7 9.0257 10.0111 -1.8309 18 6 9.3781 10.7573 -2.9237 19 1 8.6131 11.1827 -3.5565 20 6 10.7182 10.9670 -3.2181 21 7 11.6347 10.7602 -2.2963 22 14 11.2211 11.5428 -4.9226 23 1 10.5812 12.8512 -5.2119 24 1 12.6977 11.6898 -4.9797 25 1 10.7841 10.5442 -5.9311 26 6 7.7657 10.2767 -1.1251 27 6 6.9333 8.9836 -1.1055 28 6 2.7187 3.3775 -1.1972 29 6 2.2623 2.0726 -1.1971 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.0831 1.5633 2.1324 36 1 2.9025 3.8853 2.1325 37 1 3.0923 5.9623 0.8898 38 1 3.0927 5.9621 -0.8901 39 1 5.1516 7.4557 0.0007 40 1 8.7437 7.2748 1.3936 41 1 7.1833 8.2451 1.5528 42 1 8.9045 7.3124 -2.3511 43 1 9.7081 6.8541 -0.8289 44 1 10.7640 8.8441 -2.0135 45 1 10.2506 9.1767 -0.3407 46 1 12.5712 10.9071 -2.5019 47 1 7.9786 10.5928 -0.1039 48 1 7.2142 11.0603 -1.6447 49 1 6.5997 8.7456 -2.1155 50 1 6.0676 9.1151 -0.4563 51 1 2.8947 3.8881 -2.1324 52 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016859780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:16 Heat of formation + Delta-G solvation = 17.405858 kcal Electronic energy + Delta-G solvation = -28930.599178 eV Core-core repulsion = 25088.389135 eV Total energy + Delta-G solvation = -3842.210043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.29437 -39.42327 -38.27355 -35.50736 -34.82672 -33.15610 -31.75895 -31.25284 -31.09365 -29.98287 -28.34896 -27.37922 -24.35298 -23.78171 -22.92695 -22.48141 -22.08544 -21.08553 -20.58128 -20.20652 -18.22802 -17.24357 -16.67928 -16.35648 -16.07759 -15.85551 -15.27745 -14.88449 -14.81428 -14.18313 -14.06496 -13.97472 -13.94459 -13.52599 -13.51412 -13.36176 -13.15103 -13.08120 -12.72776 -12.33145 -12.28441 -12.22233 -11.94281 -11.63753 -11.58443 -11.48319 -11.30466 -11.09178 -11.04160 -10.95339 -10.72127 -10.45410 -10.34067 -9.98813 -9.94552 -9.68137 -9.62784 -9.35158 -9.05684 -8.69286 -8.44810 -8.43821 -6.63620 -5.78949 -3.22913 1.12585 1.26923 2.58464 3.08607 3.37996 3.44128 3.45405 3.64628 4.18752 4.38795 4.49475 4.53554 4.57218 4.76922 4.82677 4.84152 4.99533 5.02652 5.06635 5.15160 5.15911 5.20861 5.21329 5.32223 5.39315 5.41482 5.49615 5.55703 5.63055 5.64035 5.78402 5.86706 5.90890 5.91221 6.06620 6.07269 6.11131 6.23336 6.27745 6.41610 6.43421 6.43816 6.59173 6.61850 6.64864 6.69968 6.83308 6.84300 6.96021 7.36821 7.51357 7.67524 7.79091 8.23191 8.46732 9.21739 9.85211 10.42066 11.28593 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.001789 C = 0.001747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.956506 B =15649.170402 C =16020.325780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.067 4.067 7 C -0.103 4.103 8 C 0.515 3.485 9 O -0.534 6.534 10 N -0.697 5.697 11 C 0.069 3.931 12 H 0.131 0.869 13 C -0.183 4.183 14 C -0.096 4.096 15 C -0.106 4.106 16 C 0.173 3.827 17 N -0.589 5.589 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.004 3.996 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.150 3.850 27 C -0.097 4.097 28 C -0.101 4.101 29 C -0.117 4.117 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.400 0.600 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.090 0.910 45 H 0.018 0.982 46 H 0.254 0.746 47 H 0.019 0.981 48 H 0.054 0.946 49 H 0.063 0.937 50 H 0.045 0.955 51 H 0.120 0.880 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.421 -15.861 7.280 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.136 4.136 5 C -0.120 4.120 6 C -0.068 4.068 7 C -0.143 4.143 8 C 0.301 3.699 9 O -0.410 6.410 10 N -0.347 5.347 11 C -0.036 4.036 12 H 0.148 0.852 13 C -0.222 4.222 14 C -0.098 4.098 15 C -0.145 4.145 16 C 0.047 3.953 17 N -0.311 5.311 18 C -0.385 4.385 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.023 3.977 27 C -0.136 4.136 28 C -0.119 4.119 29 C -0.135 4.135 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.235 0.765 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.036 0.964 46 H 0.064 0.936 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.063 0.937 51 H 0.138 0.862 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.803 -16.588 7.262 27.580 hybrid contribution 0.203 0.823 -0.744 1.128 sum -20.600 -15.765 6.518 26.746 Atomic orbital electron populations 1.21746 0.94772 1.01609 1.02193 1.20540 0.96095 0.92799 1.02844 1.19872 0.99238 0.96110 0.93261 1.20938 1.00409 0.94754 0.97454 1.20942 0.98830 0.94910 0.97317 1.19237 0.99253 0.94681 0.93620 1.20684 0.92566 0.95755 1.05303 1.20483 0.89514 0.83756 0.76116 1.90721 1.70171 1.31225 1.48857 1.45431 1.06344 1.08421 1.74538 1.21890 0.79200 0.96887 1.05644 0.85178 1.23525 1.02234 1.02580 0.93821 1.21947 0.98223 0.95272 0.94320 1.21872 0.93360 1.00622 0.98653 1.20755 0.92874 0.83507 0.98130 1.43968 1.19235 1.35893 1.32010 1.19139 0.90926 1.27426 1.01013 0.91877 1.25058 0.96762 0.99874 0.97805 1.70021 1.00506 1.52569 1.31415 0.86391 0.77232 0.78677 0.84587 1.20884 1.21636 1.21029 1.20925 0.88333 0.93058 0.95392 1.21701 0.96123 0.96145 0.99678 1.20976 0.98652 0.94898 0.97405 1.20957 1.00307 0.94730 0.97490 0.92586 0.92566 0.92481 0.91074 0.91104 0.86268 0.86294 0.87992 0.87876 0.76462 0.88409 0.89105 0.92163 0.93054 0.89234 0.96355 0.93565 0.96294 0.92742 0.91792 0.93674 0.86184 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.09 -0.60 6.06 -27.88 -0.17 -0.77 16 3 C -0.08 -0.79 5.13 -104.63 -0.54 -1.33 16 4 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 5 C -0.10 -1.04 9.70 -39.59 -0.38 -1.42 16 6 C -0.07 -0.71 4.37 -104.62 -0.46 -1.17 16 7 C -0.10 -0.93 5.83 -29.03 -0.17 -1.09 16 8 C 0.52 6.61 7.82 -10.99 -0.09 6.52 16 9 O -0.53 -9.14 15.60 5.55 0.09 -9.05 16 10 N -0.70 -8.48 5.35 -53.89 -0.29 -8.77 16 11 C 0.07 1.01 6.14 -68.01 -0.42 0.60 16 12 H 0.13 2.12 7.40 -51.93 -0.38 1.73 16 13 C -0.18 -2.65 9.87 -26.79 -0.26 -2.91 16 14 C -0.10 -1.57 1.94 -154.49 -0.30 -1.87 16 15 C -0.11 -2.02 5.83 -26.46 -0.15 -2.17 16 16 C 0.17 4.07 5.39 -3.67 -0.02 4.05 16 17 N -0.59 -14.46 2.93 -171.99 -0.50 -14.96 16 18 C -0.26 -6.92 9.54 -15.06 -0.14 -7.06 16 19 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 20 C 0.00 0.10 4.89 -17.43 -0.09 0.02 16 21 N -0.90 -25.94 11.23 55.49 0.62 -25.32 16 22 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.15 3.02 6.54 -3.44 -0.02 3.00 16 27 C -0.10 -1.58 5.39 -26.22 -0.14 -1.72 16 28 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 29 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 38 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.40 3.92 7.11 -40.82 -0.29 3.63 16 40 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.05 0.90 8.11 -51.93 -0.42 0.47 16 44 H 0.09 2.37 5.95 -51.93 -0.31 2.06 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.05 1.08 7.92 -51.93 -0.41 0.66 16 49 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 50 H 0.04 0.59 6.74 -51.93 -0.35 0.24 16 51 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 52 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 416.75 15.07 6.28 6.28 Total: -1.00 -32.27 416.75 -11.86 -44.13 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -8.89 Total: 3.47 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -4.14 Total: -12.30 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -0.17 Total: -49.05 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.27 -11.86 -44.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016859780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.533 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds