Wall clock time and date at job start Wed Apr 1 2020 02:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38228 * 119.99736 * 2 1 4 4 C 1.38234 * 120.00059 * 180.22233 * 3 2 1 5 5 C 1.38243 * 120.00073 * 359.81437 * 4 3 2 6 6 C 1.38236 * 119.99432 * 359.97060 * 5 4 3 7 7 C 1.50696 * 119.99824 * 180.02562 * 6 5 4 8 8 C 1.38231 * 120.00196 * 179.77648 * 2 1 3 9 9 C 1.50707 * 119.99957 * 0.02562 * 8 2 1 10 10 C 1.50701 * 109.46927 * 269.72379 * 9 8 2 11 11 O 1.21277 * 120.00108 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99361 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99636 * 179.97438 * 12 10 9 14 14 C 1.53143 * 109.43450 * 205.00022 * 13 12 10 15 15 C 1.53707 * 108.87723 * 186.04263 * 14 13 12 16 16 H 1.09001 * 112.10018 * 187.61854 * 15 14 13 17 17 C 1.54606 * 107.83054 * 312.22725 * 15 14 13 18 18 C 1.54309 * 104.75260 * 88.66489 * 17 15 14 19 19 C 1.54615 * 104.74902 * 0.02562 * 18 17 15 20 20 H 1.08996 * 112.19150 * 146.79634 * 19 18 17 21 21 C 1.53142 * 109.43547 * 84.77601 * 13 12 10 22 22 N 1.48291 * 107.27694 * 64.00593 * 15 14 13 23 23 C 1.36935 * 128.21005 * 107.39926 * 22 15 14 24 24 H 1.08005 * 119.99923 * 15.13948 * 23 22 15 25 25 C 1.38809 * 120.00040 * 195.15079 * 23 22 15 26 26 N 1.31618 * 120.00056 * 9.26657 * 25 23 22 27 27 Si 1.86800 * 119.99941 * 189.27222 * 25 23 22 28 28 H 1.48498 * 109.47297 * 89.99933 * 27 25 23 29 29 H 1.48501 * 109.47038 * 209.99685 * 27 25 23 30 30 H 1.48500 * 109.47149 * 329.99350 * 27 25 23 31 31 H 1.08995 * 109.47497 * 270.21574 * 1 2 3 32 32 H 1.09002 * 109.47469 * 30.22229 * 1 2 3 33 33 H 1.09004 * 109.46906 * 150.21421 * 1 2 3 34 34 H 1.08001 * 120.00493 * 0.05434 * 3 2 1 35 35 H 1.08002 * 120.00362 * 179.82801 * 4 3 2 36 36 H 1.07992 * 120.00273 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47184 * 269.98250 * 7 6 5 38 38 H 1.08998 * 109.47208 * 29.97620 * 7 6 5 39 39 H 1.08995 * 109.47206 * 149.98370 * 7 6 5 40 40 H 1.09000 * 109.47129 * 149.72114 * 9 8 2 41 41 H 1.08997 * 109.46576 * 29.72513 * 9 8 2 42 42 H 0.96997 * 120.00646 * 0.02562 * 12 10 9 43 43 H 1.09000 * 109.43324 * 324.91081 * 13 12 10 44 44 H 1.09003 * 109.56863 * 66.22332 * 14 13 12 45 45 H 1.08998 * 109.67067 * 305.91547 * 14 13 12 46 46 H 1.09010 * 110.38354 * 329.84731 * 17 15 14 47 47 H 1.09000 * 110.38350 * 207.48577 * 17 15 14 48 48 H 1.09002 * 110.38436 * 241.18456 * 18 17 15 49 49 H 1.09002 * 110.38166 * 118.81879 * 18 17 15 50 50 H 1.09006 * 109.56743 * 54.13849 * 21 13 12 51 51 H 1.09004 * 109.57138 * 293.78134 * 21 13 12 52 52 H 0.97002 * 119.99877 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5804 1.1972 -0.0046 5 6 4.2717 0.0000 -0.0054 6 6 3.5805 -1.1971 -0.0009 7 6 4.3340 -2.5022 -0.0012 8 6 2.1982 -1.1971 0.0047 9 6 1.4447 -2.5023 0.0092 10 6 1.1989 -2.9355 1.4315 11 8 1.5969 -2.2520 2.3509 12 7 0.5378 -4.0830 1.6816 13 6 0.2994 -4.5044 3.0644 14 6 0.1267 -6.0254 3.1109 15 6 -0.2722 -6.4372 4.5370 16 1 -0.2798 -7.5198 4.6642 17 6 0.6870 -5.7279 5.5204 18 6 0.0130 -4.3719 5.8174 19 6 -1.2905 -4.3897 4.9861 20 1 -2.1003 -3.8516 5.4786 21 6 -0.9672 -3.8250 3.5930 22 7 -1.5962 -5.8306 4.8165 23 6 -2.8129 -6.4535 4.8985 24 1 -2.8641 -7.5279 4.9961 25 6 -3.9805 -5.7040 4.8560 26 7 -3.9301 -4.4236 4.5554 27 14 -5.6233 -6.5127 5.2256 28 1 -5.9074 -6.4144 6.6799 29 1 -6.6964 -5.8243 4.4641 30 1 -5.5723 -7.9422 4.8267 31 1 -0.3634 0.0039 1.0276 32 1 -0.3634 0.8880 -0.5173 33 1 -0.3633 -0.8919 -0.5105 34 1 1.6581 2.1325 0.0009 35 1 4.1204 2.1325 -0.0075 36 1 5.3516 0.0001 -0.0086 37 1 4.5119 -2.8188 -1.0289 38 1 5.2884 -2.3708 0.5088 39 1 3.7469 -3.2608 0.5162 40 1 2.0318 -3.2625 -0.5060 41 1 0.4904 -2.3725 -0.5012 42 1 0.2205 -4.6302 0.9463 43 1 1.1496 -4.2168 3.6829 44 1 1.0661 -6.5079 2.8408 45 1 -0.6532 -6.3277 2.4120 46 1 1.6612 -5.5739 5.0561 47 1 0.7898 -6.3095 6.4365 48 1 0.6554 -3.5508 5.4993 49 1 -0.2158 -4.2864 6.8797 50 1 -1.7981 -4.0246 2.9163 51 1 -0.8022 -2.7498 3.6641 52 1 -4.7460 -3.8999 4.5260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021271511.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:51 Heat of formation + Delta-G solvation = 4.428889 kcal Electronic energy + Delta-G solvation = -31040.634776 eV Core-core repulsion = 27197.862010 eV Total energy + Delta-G solvation = -3842.772766 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.36555 -39.53861 -38.24182 -34.38424 -33.62272 -33.34409 -32.60368 -30.23942 -30.07356 -29.16792 -28.55451 -26.68583 -26.53615 -24.57874 -23.29540 -22.13511 -20.91730 -20.72588 -19.96313 -19.26233 -18.57673 -17.14476 -16.57195 -16.33551 -16.18318 -15.79173 -14.72647 -14.65159 -14.39342 -14.18050 -14.01116 -13.70074 -13.24907 -13.01948 -12.97755 -12.93614 -12.84274 -12.80184 -12.70021 -12.45138 -12.02045 -11.90791 -11.66025 -11.52867 -11.45867 -11.34829 -11.03625 -10.93104 -10.86681 -10.77620 -10.65762 -10.61520 -10.10215 -9.75098 -9.64807 -9.55054 -9.38844 -9.30763 -8.71653 -8.55395 -8.53028 -8.34419 -6.82243 -5.76118 -3.11418 1.34121 1.38648 2.96792 3.37753 3.43839 3.45088 3.48150 3.86011 4.46433 4.59057 4.73556 4.87249 4.92961 5.07031 5.11861 5.23839 5.29646 5.30446 5.40415 5.41513 5.49921 5.54411 5.61141 5.62823 5.72555 5.77227 5.78126 5.80847 5.88609 5.93275 5.98368 6.03947 6.12460 6.21509 6.22986 6.32138 6.47360 6.48638 6.52570 6.55089 6.66811 6.69952 6.70963 6.78523 6.88934 6.98882 7.02850 7.07138 7.23936 7.58355 7.61112 7.78738 7.91906 8.24895 8.60331 9.13876 9.76096 10.55380 11.35803 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.002869 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.486290 B = 9756.544251 C =10544.803832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.065 4.065 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.129 4.129 6 C -0.069 4.069 7 C -0.116 4.116 8 C -0.061 4.061 9 C -0.111 4.111 10 C 0.513 3.487 11 O -0.533 6.533 12 N -0.725 5.725 13 C 0.147 3.853 14 C -0.134 4.134 15 C 0.151 3.849 16 H 0.069 0.931 17 C -0.131 4.131 18 C -0.145 4.145 19 C 0.182 3.818 20 H 0.109 0.891 21 C -0.118 4.118 22 N -0.584 5.584 23 C -0.224 4.224 24 H 0.074 0.926 25 C -0.004 4.004 26 N -0.909 5.909 27 Si 0.908 3.092 28 H -0.289 1.289 29 H -0.292 1.292 30 H -0.282 1.282 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.393 0.607 43 H 0.081 0.919 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.073 0.927 51 H 0.041 0.959 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.101 5.592 -11.554 19.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.065 4.065 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.069 4.069 7 C -0.173 4.173 8 C -0.062 4.062 9 C -0.151 4.151 10 C 0.298 3.702 11 O -0.409 6.409 12 N -0.375 5.375 13 C 0.044 3.956 14 C -0.175 4.175 15 C 0.042 3.958 16 H 0.087 0.913 17 C -0.170 4.170 18 C -0.184 4.184 19 C 0.075 3.925 20 H 0.127 0.873 21 C -0.159 4.159 22 N -0.305 5.305 23 C -0.352 4.352 24 H 0.092 0.908 25 C -0.202 4.202 26 N -0.556 5.556 27 Si 0.739 3.261 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.207 1.207 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.136 0.864 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.226 0.774 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.091 0.909 51 H 0.060 0.940 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.089 6.098 -10.873 18.812 hybrid contribution -1.028 -0.534 -0.280 1.192 sum 13.061 5.564 -11.152 18.053 Atomic orbital electron populations 1.20888 0.91269 1.02462 1.03027 1.19705 0.95960 0.92550 0.98320 1.20930 0.94236 0.97257 1.02091 1.21045 0.94285 0.97763 1.00304 1.20908 0.99416 0.91986 1.02357 1.19663 0.92959 0.95389 0.98884 1.20818 0.99990 0.94583 1.01863 1.18963 0.92693 0.93253 1.01260 1.20798 1.02185 0.96218 0.95901 1.20325 0.78068 0.81170 0.90656 1.90708 1.50773 1.53178 1.46274 1.46374 1.57642 1.23660 1.09849 1.21309 0.99352 0.94330 0.80604 1.22494 0.99750 0.94189 1.01041 1.21511 0.87305 0.96150 0.90829 0.91274 1.22633 0.97750 0.97362 0.99218 1.22816 0.99257 0.96086 1.00263 1.21488 0.93243 0.86236 0.91551 0.87301 1.22373 0.95597 0.97477 1.00432 1.45202 1.01163 1.03291 1.80824 1.18981 0.81534 0.91530 1.43182 0.90778 1.24831 0.97489 0.96290 1.01548 1.69887 1.26652 1.06091 1.52927 0.86181 0.83751 0.78300 0.77854 1.21660 1.21831 1.20744 0.90543 0.91633 0.91411 0.86291 0.86363 0.86383 0.91262 0.91514 0.91507 0.88337 0.87956 0.77388 0.90092 0.93479 0.91691 0.92722 0.92773 0.92467 0.92975 0.90873 0.93996 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.60 36.01 0.35 -1.04 16 2 C -0.07 -0.84 5.88 -104.63 -0.62 -1.46 16 3 C -0.13 -1.50 9.70 -39.59 -0.38 -1.88 16 4 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 5 C -0.13 -1.46 9.70 -39.58 -0.38 -1.84 16 6 C -0.07 -0.84 5.88 -104.63 -0.62 -1.46 16 7 C -0.12 -1.17 9.19 36.00 0.33 -0.83 16 8 C -0.06 -0.80 4.37 -104.62 -0.46 -1.25 16 9 C -0.11 -1.30 4.75 -29.03 -0.14 -1.44 16 10 C 0.51 7.94 7.38 -10.99 -0.08 7.85 16 11 O -0.53 -10.45 15.70 5.56 0.09 -10.36 16 12 N -0.73 -10.97 5.08 -53.66 -0.27 -11.24 16 13 C 0.15 2.66 2.10 -67.78 -0.14 2.52 16 14 C -0.13 -2.35 5.09 -26.29 -0.13 -2.49 16 15 C 0.15 2.98 4.32 -65.73 -0.28 2.69 16 16 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.13 -2.36 5.98 -25.20 -0.15 -2.51 16 18 C -0.15 -2.90 5.98 -25.20 -0.15 -3.05 16 19 C 0.18 4.24 3.14 -65.71 -0.21 4.03 16 20 H 0.11 2.92 6.35 -51.93 -0.33 2.59 16 21 C -0.12 -2.56 5.11 -26.26 -0.13 -2.70 16 22 N -0.58 -14.05 2.82 -152.74 -0.43 -14.48 16 23 C -0.22 -5.95 10.38 -15.06 -0.16 -6.11 16 24 H 0.07 1.92 7.85 -52.48 -0.41 1.51 16 25 C 0.00 -0.12 5.42 -17.43 -0.09 -0.21 16 26 N -0.91 -25.45 10.61 55.49 0.59 -24.86 16 27 Si 0.91 21.48 29.56 -169.99 -5.03 16.45 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 30 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.07 0.72 5.94 -51.93 -0.31 0.41 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 39 H 0.07 0.73 6.37 -51.93 -0.33 0.40 16 40 H 0.10 0.92 6.70 -51.93 -0.35 0.57 16 41 H 0.10 1.04 5.94 -51.93 -0.31 0.73 16 42 H 0.39 4.92 8.60 -40.82 -0.35 4.57 16 43 H 0.08 1.57 4.96 -51.93 -0.26 1.31 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.05 0.90 7.04 -51.92 -0.37 0.53 16 47 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.06 1.11 7.04 -51.93 -0.37 0.75 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 50 H 0.07 1.79 8.01 -51.93 -0.42 1.37 16 51 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 52 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -31.20 397.69 -11.33 -42.53 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.42 Total: 8.83 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: -3.85 Total: -12.86 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.11 Total: -50.58 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.20 -11.33 -42.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021271511.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.956 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds