Wall clock time and date at job start Wed Apr 1 2020 03:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46835 * 2 1 4 4 C 1.38256 * 120.00304 * 90.00032 * 3 2 1 5 5 C 1.38215 * 120.00275 * 180.02562 * 4 3 2 6 6 C 1.38257 * 119.99715 * 359.97438 * 5 4 3 7 7 C 1.38202 * 120.00118 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99890 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47339 * 90.00339 * 8 7 6 10 10 O 1.21290 * 119.99484 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00293 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00042 * 180.02562 * 11 9 8 13 13 C 1.53153 * 109.39416 * 275.19713 * 12 11 9 14 14 C 1.54249 * 108.84181 * 185.97655 * 13 12 11 15 15 H 1.08994 * 112.32732 * 187.68886 * 14 13 12 16 16 C 1.54608 * 107.85398 * 312.47051 * 14 13 12 17 17 C 1.53794 * 104.84934 * 88.47675 * 16 14 13 18 18 C 1.54608 * 104.85214 * 359.97438 * 17 16 14 19 19 H 1.09001 * 112.69449 * 146.96358 * 18 17 16 20 20 C 1.53145 * 109.43308 * 154.99557 * 12 11 9 21 21 N 1.48290 * 106.99373 * 64.12653 * 14 13 12 22 22 C 1.36943 * 128.20734 * 107.52902 * 21 14 13 23 23 H 1.07999 * 119.99583 * 164.46313 * 22 21 14 24 24 C 1.38805 * 120.00222 * 344.46021 * 22 21 14 25 25 N 1.31629 * 119.99820 * 350.72393 * 24 22 21 26 26 Si 1.86803 * 120.00184 * 170.71962 * 24 22 21 27 27 H 1.48498 * 109.47130 * 180.02562 * 26 24 22 28 28 H 1.48495 * 109.46808 * 300.00219 * 26 24 22 29 29 H 1.48503 * 109.46766 * 60.00201 * 26 24 22 30 30 C 1.38212 * 119.99820 * 270.27752 * 3 2 1 31 31 H 1.09005 * 109.47103 * 60.00437 * 1 2 3 32 32 H 1.09001 * 109.46789 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47051 * 299.99756 * 1 2 3 34 34 H 1.09000 * 109.47051 * 240.00244 * 2 1 3 35 35 H 1.08993 * 109.47144 * 119.99993 * 2 1 3 36 36 H 1.08008 * 119.99556 * 359.97438 * 4 3 2 37 37 H 1.08001 * 119.99839 * 179.97438 * 5 4 3 38 38 H 1.08001 * 119.99282 * 179.97438 * 6 5 4 39 39 H 1.08993 * 109.47382 * 330.00119 * 8 7 6 40 40 H 1.09004 * 109.47029 * 209.99728 * 8 7 6 41 41 H 0.97000 * 120.00255 * 359.97438 * 11 9 8 42 42 H 1.08999 * 109.43547 * 35.08149 * 12 11 9 43 43 H 1.09000 * 109.56651 * 305.87947 * 13 12 11 44 44 H 1.08998 * 109.57241 * 66.24114 * 13 12 11 45 45 H 1.09005 * 110.38076 * 207.17756 * 16 14 13 46 46 H 1.08997 * 110.38290 * 329.42992 * 16 14 13 47 47 H 1.09005 * 110.43080 * 241.09700 * 17 16 14 48 48 H 1.08994 * 110.24351 * 118.80100 * 17 16 14 49 49 H 1.08994 * 109.57202 * 54.09393 * 20 12 11 50 50 H 1.08995 * 109.66608 * 293.78494 * 20 12 11 51 51 H 0.97005 * 119.99626 * 180.02562 * 25 24 22 52 52 H 1.08002 * 120.00647 * 359.97438 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0727 1.1973 5 6 2.7229 3.3760 1.1973 6 6 2.9533 4.0277 -0.0001 7 6 2.7229 3.3761 -1.1969 8 6 2.9735 4.0867 -2.5021 9 6 4.3968 3.8505 -2.9375 10 8 5.1351 3.1723 -2.2549 11 7 4.8495 4.3938 -4.0848 12 6 6.2329 4.1636 -4.5084 13 6 7.1495 5.1852 -3.8287 14 6 8.5754 5.0302 -4.3961 15 1 9.3035 5.6371 -3.8580 16 6 8.9290 3.5251 -4.3850 17 6 8.4235 2.9915 -5.7359 18 6 7.8088 4.2214 -6.4429 19 1 7.9301 4.1883 -7.5256 20 6 6.3318 4.3133 -6.0293 21 7 8.5093 5.3792 -5.8358 22 6 8.9868 6.5018 -6.4580 23 1 9.0963 6.5185 -7.5323 24 6 9.3301 7.6182 -5.7080 25 7 9.0290 7.6688 -4.4276 26 14 10.2195 9.0487 -6.5156 27 1 10.4706 10.1087 -5.5063 28 1 11.5138 8.5771 -7.0701 29 1 9.3814 9.5970 -7.6121 30 6 2.2572 2.0743 -1.1970 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.0824 1.5636 2.1327 37 1 2.9025 3.8852 2.1326 38 1 3.3124 5.0462 0.0000 39 1 2.8061 5.1558 -2.3717 40 1 2.2927 3.7023 -3.2616 41 1 4.2591 4.9365 -4.6306 42 1 6.5371 3.1568 -4.2224 43 1 6.7835 6.1926 -4.0267 44 1 7.1637 5.0047 -2.7538 45 1 10.0077 3.3891 -4.3057 46 1 8.4222 3.0221 -3.5615 47 1 7.6649 2.2240 -5.5820 48 1 9.2541 2.5938 -6.3190 49 1 5.9284 5.2808 -6.3280 50 1 5.7669 3.5169 -6.5137 51 1 9.2685 8.4492 -3.9035 52 1 2.0733 1.5666 -2.1323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021301427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:25 Heat of formation + Delta-G solvation = -0.201964 kcal Electronic energy + Delta-G solvation = -30226.589572 eV Core-core repulsion = 26383.615997 eV Total energy + Delta-G solvation = -3842.973575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.15 seconds Orbital eigenvalues (eV) -40.16564 -39.46731 -38.33137 -34.64511 -34.28907 -32.67375 -32.42157 -30.20868 -29.97104 -29.50802 -29.17501 -27.37563 -24.59915 -24.08244 -23.28733 -22.43011 -21.63889 -20.60245 -19.88974 -19.25204 -18.57583 -17.15037 -16.58606 -16.45181 -16.00880 -15.80566 -15.11970 -14.70920 -14.63623 -14.10180 -14.02448 -13.85508 -13.72975 -13.30493 -13.01862 -12.95451 -12.87855 -12.78792 -12.29425 -12.14533 -11.95739 -11.85212 -11.78599 -11.45365 -11.43474 -11.33164 -11.02661 -10.95203 -10.86093 -10.78631 -10.65919 -10.60826 -10.13032 -9.75144 -9.64712 -9.55873 -9.38414 -9.30626 -8.79976 -8.70543 -8.59639 -8.34267 -6.81341 -5.75718 -3.11030 1.31920 1.39011 2.96447 3.38199 3.44169 3.44527 3.47209 3.88108 4.46858 4.54910 4.60839 4.77651 4.96260 5.06343 5.10829 5.14513 5.19934 5.29785 5.33258 5.40017 5.41074 5.47505 5.53658 5.55827 5.68307 5.71374 5.78376 5.80914 5.91812 5.93613 5.98907 6.03691 6.04298 6.07243 6.22844 6.32797 6.44312 6.48786 6.53893 6.55833 6.59457 6.70470 6.71123 6.79147 6.89266 6.98573 7.00406 7.07532 7.23941 7.58520 7.61000 7.79165 7.91709 8.25529 8.59643 9.14173 9.76499 10.55954 11.36290 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019847 B = 0.002391 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.468522 B =11705.822923 C =12302.221274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.122 4.122 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.056 4.056 8 C -0.106 4.106 9 C 0.511 3.489 10 O -0.535 6.535 11 N -0.724 5.724 12 C 0.147 3.853 13 C -0.119 4.119 14 C 0.182 3.818 15 H 0.110 0.890 16 C -0.144 4.144 17 C -0.130 4.130 18 C 0.151 3.849 19 H 0.069 0.931 20 C -0.134 4.134 21 N -0.584 5.584 22 C -0.224 4.224 23 H 0.074 0.926 24 C -0.005 4.005 25 N -0.910 5.910 26 Si 0.909 3.091 27 H -0.291 1.291 28 H -0.286 1.286 29 H -0.285 1.285 30 C -0.103 4.103 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.394 0.606 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.053 0.947 49 H 0.064 0.936 50 H 0.047 0.953 51 H 0.253 0.747 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.584 -11.326 6.434 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.140 4.140 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.056 4.056 8 C -0.146 4.146 9 C 0.296 3.704 10 O -0.412 6.412 11 N -0.374 5.374 12 C 0.044 3.956 13 C -0.159 4.159 14 C 0.074 3.926 15 H 0.127 0.873 16 C -0.184 4.184 17 C -0.169 4.169 18 C 0.042 3.958 19 H 0.087 0.913 20 C -0.175 4.175 21 N -0.305 5.305 22 C -0.353 4.353 23 H 0.091 0.909 24 C -0.202 4.202 25 N -0.556 5.556 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.212 1.212 29 H -0.212 1.212 30 C -0.121 4.121 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.227 0.773 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.065 0.935 51 H 0.063 0.937 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.938 -11.540 6.952 20.869 hybrid contribution 0.110 1.192 -0.624 1.350 sum -15.828 -10.347 6.328 19.941 Atomic orbital electron populations 1.21747 0.94853 1.01535 1.02147 1.20530 0.96000 0.92842 1.02842 1.19798 0.99448 0.96010 0.93126 1.20959 1.00711 0.95013 0.97298 1.21063 0.99547 0.94966 0.97853 1.20987 0.99514 1.00164 0.92006 1.19269 0.98327 0.94320 0.93733 1.20723 0.95389 1.02427 0.96046 1.20380 0.89001 0.79824 0.81204 1.90714 1.58183 1.38990 1.53281 1.46369 1.14594 1.52790 1.23687 1.21316 0.79563 1.00417 0.94326 1.22472 0.97356 0.98661 0.97455 1.21604 0.94530 0.90188 0.86241 0.87251 1.22703 0.99812 0.99697 0.96148 1.22540 0.99376 0.97635 0.97388 1.21506 0.89405 0.88727 0.96152 0.91279 1.22484 0.99993 1.00811 0.94179 1.45205 1.64340 1.17531 1.03435 1.18921 1.35702 0.89144 0.91485 0.90864 1.24840 1.01730 0.97317 0.96286 1.69880 1.50085 1.29554 1.06083 0.86257 0.79773 0.81985 0.78047 1.21690 1.21237 1.21205 1.20806 0.99903 0.93945 0.97491 0.92576 0.92534 0.92632 0.91070 0.91134 0.86467 0.86181 0.86234 0.88115 0.88351 0.77335 0.90098 0.90862 0.94023 0.92981 0.92446 0.92710 0.92775 0.91687 0.93460 0.93678 0.86491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.08 -0.72 6.06 -27.88 -0.17 -0.89 16 3 C -0.08 -0.92 5.13 -104.62 -0.54 -1.46 16 4 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 5 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 6 C -0.11 -1.36 9.70 -39.59 -0.38 -1.74 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.16 16 8 C -0.11 -1.20 5.83 -29.03 -0.17 -1.37 16 9 C 0.51 7.96 7.78 -10.99 -0.09 7.87 16 10 O -0.54 -10.59 15.70 5.55 0.09 -10.51 16 11 N -0.72 -11.05 5.08 -53.65 -0.27 -11.33 16 12 C 0.15 2.68 2.10 -67.77 -0.14 2.54 16 13 C -0.12 -2.60 5.13 -26.00 -0.13 -2.73 16 14 C 0.18 4.25 3.18 -65.45 -0.21 4.04 16 15 H 0.11 2.95 6.34 -51.93 -0.33 2.62 16 16 C -0.14 -2.90 5.95 -25.47 -0.15 -3.05 16 17 C -0.13 -2.37 5.96 -25.47 -0.15 -2.52 16 18 C 0.15 3.00 4.32 -65.74 -0.28 2.71 16 19 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 20 C -0.13 -2.37 5.09 -26.31 -0.13 -2.51 16 21 N -0.58 -14.13 2.81 -152.45 -0.43 -14.56 16 22 C -0.22 -5.98 10.38 -15.06 -0.16 -6.13 16 23 H 0.07 1.90 7.85 -52.49 -0.41 1.49 16 24 C 0.00 -0.12 5.42 -17.43 -0.09 -0.22 16 25 N -0.91 -25.61 10.61 55.49 0.59 -25.02 16 26 Si 0.91 21.54 29.56 -169.99 -5.03 16.51 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 30 C -0.10 -1.23 9.36 -39.58 -0.37 -1.60 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 36 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 40 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 41 H 0.39 4.94 8.60 -40.82 -0.35 4.59 16 42 H 0.08 1.58 4.97 -51.93 -0.26 1.32 16 43 H 0.07 1.81 8.01 -51.93 -0.42 1.39 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.06 1.12 7.06 -51.93 -0.37 0.75 16 47 H 0.05 0.90 7.04 -51.93 -0.37 0.54 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 52 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 406.51 15.07 6.13 6.13 Total: -1.00 -31.32 406.51 -11.78 -43.09 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.81 Total: 8.00 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -4.04 Total: -12.31 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.11 Total: -50.91 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.32 -11.78 -43.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021301427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.890 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.15 seconds