Wall clock time and date at job start Wed Apr 1 2020 02:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38259 * 119.99998 * 2 1 4 4 C 1.38215 * 120.00025 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99794 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99736 * 179.97438 * 5 4 3 7 7 C 1.38211 * 120.00385 * 0.02562 * 5 4 3 8 8 C 1.50698 * 120.00300 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47124 * 84.99681 * 8 7 5 10 10 O 1.21281 * 120.00081 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99895 * 180.27799 * 9 8 7 12 12 C 1.46501 * 119.99909 * 179.72751 * 11 9 8 13 13 C 1.53144 * 109.43774 * 119.95923 * 12 11 9 14 14 C 1.53700 * 108.87500 * 66.17518 * 13 12 11 15 15 H 1.09005 * 112.10042 * 188.25769 * 14 13 12 16 16 C 1.54611 * 107.83288 * 312.23155 * 14 13 12 17 17 C 1.54300 * 104.75286 * 88.66843 * 16 14 13 18 18 C 1.54612 * 104.75117 * 359.97438 * 17 16 14 19 19 H 1.09002 * 112.19003 * 146.80025 * 18 17 16 20 20 C 1.53142 * 109.43435 * 240.14220 * 12 11 9 21 21 N 1.48284 * 107.27597 * 64.00917 * 14 13 12 22 22 C 1.36949 * 128.20980 * 107.37423 * 21 14 13 23 23 H 1.07993 * 119.99708 * 15.34418 * 22 21 14 24 24 C 1.38814 * 119.99674 * 195.35238 * 22 21 14 25 25 N 1.31610 * 120.00303 * 9.24416 * 24 22 21 26 26 Si 1.86800 * 119.99469 * 189.24223 * 24 22 21 27 27 H 1.48499 * 109.47313 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46772 * 120.00038 * 26 24 22 29 29 H 1.48500 * 109.46954 * 240.00017 * 26 24 22 30 30 C 1.38216 * 120.00353 * 180.27227 * 2 1 3 31 31 H 1.09003 * 109.47261 * 90.00098 * 1 2 3 32 32 H 1.09004 * 109.47364 * 210.00052 * 1 2 3 33 33 H 1.09007 * 109.47441 * 330.00329 * 1 2 3 34 34 H 1.07999 * 119.99920 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.99632 * 179.97438 * 4 3 2 36 36 H 1.08997 * 109.46962 * 270.02260 * 6 5 4 37 37 H 1.09002 * 109.47078 * 30.02577 * 6 5 4 38 38 H 1.08998 * 109.46753 * 150.02453 * 6 5 4 39 39 H 1.09000 * 109.47065 * 325.00261 * 8 7 5 40 40 H 1.09000 * 109.47528 * 204.99583 * 8 7 5 41 41 H 0.97001 * 120.00046 * 359.72499 * 11 9 8 42 42 H 1.09009 * 109.43379 * 0.04669 * 12 11 9 43 43 H 1.08996 * 109.57006 * 185.99670 * 13 12 11 44 44 H 1.09005 * 109.56654 * 306.35646 * 13 12 11 45 45 H 1.09005 * 110.38430 * 207.48815 * 16 14 13 46 46 H 1.09007 * 110.38125 * 329.73567 * 16 14 13 47 47 H 1.09004 * 110.38465 * 118.81381 * 17 16 14 48 48 H 1.09006 * 110.38377 * 241.18212 * 17 16 14 49 49 H 1.09002 * 109.57432 * 53.63832 * 20 12 11 50 50 H 1.08998 * 109.57260 * 174.00445 * 20 12 11 51 51 H 0.97002 * 119.99861 * 179.97438 * 25 24 22 52 52 H 1.08008 * 119.99352 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2716 0.0000 -0.0005 6 6 5.7787 0.0001 -0.0017 7 6 3.5806 -1.1969 -0.0005 8 6 4.3341 -2.5020 -0.0011 9 6 4.6931 -2.8754 1.4141 10 8 4.3686 -2.1531 2.3328 11 7 5.3792 -4.0095 1.6584 12 6 5.7334 -4.3694 3.0336 13 6 5.1031 -5.7201 3.3853 14 6 5.7509 -6.8118 2.5188 15 1 5.2438 -7.7713 2.6210 16 6 5.7628 -6.3106 1.0563 17 6 7.0899 -5.5357 0.9173 18 6 7.7549 -5.6410 2.3091 19 1 8.8423 -5.6799 2.2439 20 6 7.2568 -4.4635 3.1595 21 7 7.1841 -6.8789 2.8936 22 6 7.8275 -7.8522 3.6105 23 1 7.3546 -8.8107 3.7651 24 6 9.0876 -7.6067 4.1386 25 7 9.5874 -6.3895 4.1100 26 14 10.0738 -9.0040 4.8899 27 1 9.2946 -10.2648 4.7985 28 1 11.3535 -9.1589 4.1526 29 1 10.3575 -8.6990 6.3153 30 6 2.1981 -1.1969 -0.0057 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1326 -0.0004 35 1 4.1203 2.1327 -0.0010 36 1 6.1412 0.0000 -1.0296 37 1 6.1424 0.8901 0.5119 38 1 6.1424 -0.8899 0.5119 39 1 5.2446 -2.3956 -0.5909 40 1 3.7090 -3.2823 -0.4353 41 1 5.6384 -4.5873 0.9237 42 1 5.3596 -3.6060 3.7161 43 1 5.2753 -5.9401 4.4389 44 1 4.0316 -5.6853 3.1882 45 1 5.7414 -7.1537 0.3657 46 1 4.9148 -5.6503 0.8744 47 1 7.7215 -5.9976 0.1584 48 1 6.8960 -4.4925 0.6675 49 1 7.7105 -3.5390 2.8023 50 1 7.5276 -4.6260 4.2027 51 1 10.4678 -6.2179 4.4794 52 1 1.6580 -2.1323 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021368329.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:55 Heat of formation + Delta-G solvation = 74.291115 kcal Electronic energy + Delta-G solvation = -31149.275040 eV Core-core repulsion = 27309.531727 eV Total energy + Delta-G solvation = -3839.743313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.10638 -39.81843 -38.08385 -34.29368 -34.09621 -32.47944 -32.12137 -31.20364 -30.29592 -29.35555 -29.14075 -27.66853 -24.88511 -24.53746 -23.31926 -22.47719 -21.61663 -20.54414 -20.00639 -19.60288 -19.03465 -17.36838 -16.71944 -16.10778 -15.89945 -15.14503 -14.85107 -14.65570 -14.44831 -14.22984 -13.98373 -13.63696 -13.29224 -13.28302 -12.99325 -12.92976 -12.83260 -12.79031 -12.64338 -12.31053 -12.07401 -11.99954 -11.77944 -11.66676 -11.61500 -11.49273 -10.98944 -10.97414 -10.96098 -10.92856 -10.66817 -10.37471 -10.27704 -10.05718 -9.74193 -9.51037 -9.40498 -9.37589 -8.75833 -8.65325 -8.38495 -8.15020 -6.85611 -5.81174 -3.16036 1.31345 1.38340 2.99035 3.35463 3.42531 3.44200 3.52479 3.92793 4.42937 4.59350 4.70960 4.82136 4.95874 5.10723 5.12785 5.18292 5.21333 5.31462 5.37076 5.41723 5.43005 5.46800 5.49879 5.58692 5.61425 5.63490 5.67331 5.69209 5.79772 5.84928 5.88278 5.99116 6.02095 6.08173 6.17304 6.19709 6.30395 6.41350 6.51254 6.54154 6.54661 6.57583 6.64492 6.65959 6.78371 6.88333 7.00069 7.02105 7.15254 7.50552 7.52896 7.71022 7.96577 8.18438 8.64764 9.09119 9.71319 10.49433 11.31380 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.002572 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.347290 B =10884.205994 C =11289.375274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.121 4.121 4 C -0.117 4.117 5 C -0.073 4.073 6 C -0.117 4.117 7 C -0.055 4.055 8 C -0.108 4.108 9 C 0.497 3.503 10 O -0.545 6.545 11 N -0.738 5.738 12 C 0.142 3.858 13 C -0.137 4.137 14 C 0.150 3.850 15 H 0.067 0.933 16 C -0.161 4.161 17 C -0.173 4.173 18 C 0.183 3.817 19 H 0.111 0.889 20 C -0.122 4.122 21 N -0.583 5.583 22 C -0.224 4.224 23 H 0.076 0.924 24 C -0.004 4.004 25 N -0.911 5.911 26 Si 0.909 3.091 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C -0.105 4.105 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.426 0.574 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.059 0.941 48 H 0.077 0.923 49 H 0.042 0.958 50 H 0.084 0.916 51 H 0.253 0.747 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.614 11.095 -12.105 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.139 4.139 4 C -0.135 4.135 5 C -0.073 4.073 6 C -0.174 4.174 7 C -0.055 4.055 8 C -0.148 4.148 9 C 0.282 3.718 10 O -0.423 6.423 11 N -0.411 5.411 12 C 0.039 3.961 13 C -0.178 4.178 14 C 0.042 3.958 15 H 0.086 0.914 16 C -0.201 4.201 17 C -0.213 4.213 18 C 0.076 3.924 19 H 0.128 0.872 20 C -0.162 4.162 21 N -0.304 5.304 22 C -0.352 4.352 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.557 5.557 26 Si 0.740 3.260 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C -0.123 4.123 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.286 0.714 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.061 0.939 50 H 0.103 0.897 51 H 0.063 0.937 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.577 11.453 -11.344 20.447 hybrid contribution 0.619 -0.857 0.240 1.084 sum -11.959 10.597 -11.104 19.458 Atomic orbital electron populations 1.20755 0.91413 1.02676 1.01974 1.19805 0.95857 0.93123 1.00713 1.20939 0.94140 0.97285 1.01505 1.20938 0.94127 0.97283 1.01198 1.19685 0.95939 0.92548 0.99114 1.20830 0.91374 1.03306 1.01871 1.19123 0.93265 0.93265 0.99869 1.20750 1.01841 0.96195 0.96051 1.20608 0.78539 0.82093 0.90541 1.90673 1.54132 1.51559 1.45953 1.49083 1.55805 1.23991 1.12210 1.21062 0.96503 0.96245 0.82337 1.22500 0.97665 0.95942 1.01670 1.21516 0.87875 0.95473 0.90971 0.91447 1.23267 0.97113 0.99841 0.99840 1.23433 0.97041 0.98707 1.02077 1.21451 0.99362 0.85258 0.86376 0.87180 1.22323 0.91948 0.98420 1.03547 1.45171 1.01453 1.22575 1.61190 1.19024 0.98968 0.91661 1.25571 0.90670 1.24837 0.98869 0.96436 1.00001 1.69866 1.17879 1.17958 1.49988 0.86094 0.80051 0.81324 0.78539 1.20527 1.21764 1.21814 1.20826 0.93280 0.97544 1.00621 0.91446 0.91647 0.91742 0.86428 0.86258 0.91244 0.91512 0.91333 0.88155 0.88453 0.71434 0.90057 0.90937 0.93489 0.92169 0.90392 0.92236 0.90514 0.93928 0.89732 0.93700 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.00 0.36 -0.57 16 2 C -0.09 -1.06 5.88 -104.62 -0.62 -1.68 16 3 C -0.12 -1.31 9.70 -39.58 -0.38 -1.70 16 4 C -0.12 -1.35 9.70 -39.58 -0.38 -1.73 16 5 C -0.07 -0.91 5.88 -104.62 -0.62 -1.53 16 6 C -0.12 -1.30 9.22 36.01 0.33 -0.97 16 7 C -0.05 -0.70 4.37 -104.63 -0.46 -1.16 16 8 C -0.11 -1.27 5.15 -29.03 -0.15 -1.42 16 9 C 0.50 7.75 7.05 -10.98 -0.08 7.67 16 10 O -0.55 -10.67 15.36 5.56 0.09 -10.58 16 11 N -0.74 -11.48 2.78 -53.66 -0.15 -11.62 16 12 C 0.14 2.64 3.15 -67.78 -0.21 2.43 16 13 C -0.14 -2.53 5.49 -26.29 -0.14 -2.68 16 14 C 0.15 2.87 4.32 -65.74 -0.28 2.59 16 15 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.16 -2.55 5.75 -25.20 -0.14 -2.69 16 17 C -0.17 -2.93 5.76 -25.20 -0.15 -3.08 16 18 C 0.18 3.95 3.13 -65.80 -0.21 3.75 16 19 H 0.11 2.77 6.36 -51.93 -0.33 2.44 16 20 C -0.12 -2.54 5.40 -26.37 -0.14 -2.69 16 21 N -0.58 -13.58 2.82 -152.83 -0.43 -14.01 16 22 C -0.22 -5.86 10.38 -15.05 -0.16 -6.02 16 23 H 0.08 1.94 7.85 -52.49 -0.41 1.52 16 24 C 0.00 -0.11 5.42 -17.43 -0.09 -0.21 16 25 N -0.91 -25.01 10.59 55.49 0.59 -24.42 16 26 Si 0.91 21.27 29.56 -169.99 -5.03 16.24 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 C -0.10 -1.27 9.34 -39.58 -0.37 -1.64 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.06 0.47 8.09 -51.93 -0.42 0.06 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.07 0.86 6.16 -51.93 -0.32 0.54 16 39 H 0.10 0.99 6.99 -51.93 -0.36 0.63 16 40 H 0.10 0.92 8.05 -51.93 -0.42 0.50 16 41 H 0.43 5.99 1.90 -65.44 -0.12 5.87 16 42 H 0.08 1.63 6.90 -51.92 -0.36 1.28 16 43 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 1.08 5.27 -51.93 -0.27 0.80 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.08 1.16 5.27 -51.93 -0.27 0.88 16 49 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.08 2.05 7.99 -51.93 -0.41 1.63 16 51 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 52 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -30.48 392.15 -11.25 -41.72 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.33 Total: 10.10 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -3.89 Total: -13.33 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: 0.01 Total: -50.06 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.48 -11.25 -41.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021368329.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.014 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds