Wall clock time and date at job start Wed Apr 1 2020 02:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38229 * 120.00389 * 2 1 4 4 C 1.38234 * 120.00692 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00587 * 179.97438 * 4 3 2 6 6 C 1.38239 * 119.99354 * 0.02562 * 4 3 2 7 7 C 1.38234 * 120.00259 * 359.95356 * 6 4 3 8 8 C 1.50699 * 120.00022 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47057 * 90.00231 * 8 7 6 10 10 O 1.21279 * 120.00022 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00216 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00336 * 179.97438 * 11 9 8 13 13 C 1.53150 * 109.43456 * 119.92593 * 12 11 9 14 14 C 1.54244 * 108.84515 * 66.08771 * 13 12 11 15 15 H 1.08998 * 112.33477 * 187.68866 * 14 13 12 16 16 C 1.54613 * 107.85807 * 312.47601 * 14 13 12 17 17 C 1.53800 * 104.85031 * 88.46517 * 16 14 13 18 18 C 1.54608 * 104.84943 * 0.02562 * 17 16 14 19 19 H 1.08994 * 112.69609 * 146.96362 * 18 17 16 20 20 C 1.53139 * 109.43850 * 240.15284 * 12 11 9 21 21 N 1.48296 * 106.99026 * 64.13086 * 14 13 12 22 22 C 1.36938 * 128.21335 * 107.53388 * 21 14 13 23 23 H 1.07998 * 119.99988 * 164.58800 * 22 21 14 24 24 C 1.38816 * 119.99356 * 344.58830 * 22 21 14 25 25 N 1.31614 * 120.00501 * 351.61008 * 24 22 21 26 26 Si 1.86803 * 119.99702 * 171.61888 * 24 22 21 27 27 H 1.48500 * 109.46779 * 269.99774 * 26 24 22 28 28 H 1.48497 * 109.47098 * 29.99202 * 26 24 22 29 29 H 1.48492 * 109.47357 * 149.99756 * 26 24 22 30 30 C 1.38233 * 119.99848 * 180.21167 * 2 1 3 31 31 H 1.09000 * 109.47725 * 90.00006 * 1 2 3 32 32 H 1.09001 * 109.47308 * 210.00017 * 1 2 3 33 33 H 1.09007 * 109.47311 * 329.99729 * 1 2 3 34 34 H 1.08006 * 119.99606 * 0.02562 * 3 2 1 35 35 H 1.08993 * 109.47439 * 270.02324 * 5 4 3 36 36 H 1.09001 * 109.46774 * 30.02264 * 5 4 3 37 37 H 1.09005 * 109.47530 * 150.02256 * 5 4 3 38 38 H 1.08002 * 119.99503 * 179.97438 * 6 4 3 39 39 H 1.09003 * 109.47200 * 330.00154 * 8 7 6 40 40 H 1.09000 * 109.47149 * 210.00605 * 8 7 6 41 41 H 0.97002 * 119.99891 * 359.97438 * 11 9 8 42 42 H 1.09008 * 109.39736 * 0.04516 * 12 11 9 43 43 H 1.09001 * 109.56826 * 185.99404 * 13 12 11 44 44 H 1.09003 * 109.57001 * 306.35920 * 13 12 11 45 45 H 1.08995 * 110.38576 * 207.17391 * 16 14 13 46 46 H 1.09007 * 110.37793 * 329.42656 * 16 14 13 47 47 H 1.08999 * 110.43196 * 241.10268 * 17 16 14 48 48 H 1.09002 * 110.23089 * 118.80378 * 17 16 14 49 49 H 1.09004 * 109.57360 * 174.00509 * 20 12 11 50 50 H 1.08995 * 109.66926 * 53.69770 * 20 12 11 51 51 H 0.96992 * 120.00382 * 180.02562 * 25 24 22 52 52 H 1.07999 * 120.00103 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.3340 2.5021 -0.0011 6 6 4.2716 -0.0001 -0.0016 7 6 3.5804 -1.1972 -0.0012 8 6 4.3339 -2.5023 -0.0018 9 6 4.5860 -2.9374 1.4189 10 8 4.1922 -2.2552 2.3410 11 7 5.2491 -4.0847 1.6647 12 6 5.4947 -4.5074 3.0457 13 6 4.8360 -5.8689 3.2866 14 6 5.5483 -6.9274 2.4199 15 1 5.0414 -7.8920 2.4443 16 6 5.6788 -6.3583 0.9883 17 6 7.0089 -5.5862 0.9908 18 6 7.5641 -5.7580 2.4235 19 1 8.6530 -5.7963 2.4507 20 6 7.0034 -4.6146 3.2852 21 7 6.9463 -7.0164 2.9064 22 6 7.5303 -8.0248 3.6257 23 1 8.6062 -8.0810 3.7014 24 6 6.7394 -8.9747 4.2574 25 7 5.4336 -8.8170 4.3059 26 14 7.5284 -10.4767 5.0390 27 1 7.6087 -11.5708 4.0382 28 1 8.8952 -10.1315 5.5056 29 1 6.7086 -10.9218 6.1943 30 6 2.1981 -1.1971 -0.0044 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6581 2.1324 0.0004 35 1 4.5150 2.8168 -1.0288 36 1 3.7453 3.2618 0.5131 37 1 5.2869 2.3718 0.5120 38 1 5.3516 -0.0001 -0.0024 39 1 5.2860 -2.3720 -0.5162 40 1 3.7445 -3.2619 -0.5153 41 1 5.5638 -4.6306 0.9272 42 1 5.0700 -3.7729 3.7301 43 1 4.9254 -6.1365 4.3395 44 1 3.7831 -5.8193 3.0088 45 1 5.7142 -7.1680 0.2595 46 1 4.8479 -5.6874 0.7693 47 1 6.8373 -4.5319 0.7737 48 1 7.6965 -6.0175 0.2632 49 1 7.1920 -4.8248 4.3380 50 1 7.4864 -3.6777 3.0078 51 1 4.8810 -9.4805 4.7476 52 1 1.6581 -2.1324 -0.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021368768.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:00 Heat of formation + Delta-G solvation = 72.163634 kcal Electronic energy + Delta-G solvation = -30755.125171 eV Core-core repulsion = 26915.289604 eV Total energy + Delta-G solvation = -3839.835567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.07079 -39.73728 -38.13322 -34.15700 -33.59445 -33.52345 -32.15012 -31.30300 -30.25910 -29.22536 -28.20738 -27.03443 -26.76144 -24.57527 -23.30864 -22.10651 -20.84527 -20.80770 -20.14149 -19.59884 -19.06894 -17.36722 -16.70398 -16.35693 -15.95927 -15.08364 -14.83310 -14.50480 -14.41776 -14.17605 -14.06396 -13.66985 -13.36049 -13.20734 -13.02816 -12.95916 -12.90629 -12.68800 -12.65439 -12.52634 -12.10575 -12.06970 -11.67549 -11.66313 -11.60718 -11.46836 -11.06614 -11.03061 -10.97330 -10.92124 -10.66437 -10.37910 -10.28550 -10.04738 -9.75667 -9.49833 -9.39734 -9.37335 -8.64872 -8.59427 -8.55984 -8.14803 -6.85117 -5.80320 -3.15860 1.32370 1.36108 2.99818 3.36155 3.42313 3.43738 3.51326 3.93866 4.43209 4.58256 4.67804 4.70488 5.07068 5.12282 5.15748 5.19956 5.23231 5.24837 5.31942 5.41102 5.43395 5.46298 5.48092 5.51823 5.52120 5.61878 5.63500 5.71668 5.73419 5.80829 5.85287 5.99122 6.02644 6.08927 6.13524 6.17339 6.31092 6.49528 6.50873 6.51914 6.55010 6.58615 6.60982 6.66278 6.78786 6.89128 6.99824 7.02023 7.15211 7.50651 7.53225 7.71486 7.97006 8.19522 8.65150 9.09645 9.71700 10.49755 11.31901 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024758 B = 0.002433 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.660594 B =11505.022155 C =11960.365827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.050 4.050 8 C -0.107 4.107 9 C 0.496 3.504 10 O -0.547 6.547 11 N -0.738 5.738 12 C 0.142 3.858 13 C -0.123 4.123 14 C 0.181 3.819 15 H 0.113 0.887 16 C -0.173 4.173 17 C -0.160 4.160 18 C 0.150 3.850 19 H 0.068 0.932 20 C -0.137 4.137 21 N -0.583 5.583 22 C -0.224 4.224 23 H 0.075 0.925 24 C -0.004 4.004 25 N -0.912 5.912 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.281 1.281 29 H -0.291 1.291 30 C -0.111 4.111 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.117 0.883 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.426 0.574 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.042 0.958 45 H 0.059 0.941 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.059 0.941 49 H 0.072 0.928 50 H 0.046 0.954 51 H 0.253 0.747 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.735 16.770 -12.515 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.085 4.085 5 C -0.169 4.169 6 C -0.129 4.129 7 C -0.050 4.050 8 C -0.147 4.147 9 C 0.282 3.718 10 O -0.425 6.425 11 N -0.410 5.410 12 C 0.038 3.962 13 C -0.163 4.163 14 C 0.074 3.926 15 H 0.131 0.869 16 C -0.212 4.212 17 C -0.200 4.200 18 C 0.041 3.959 19 H 0.086 0.914 20 C -0.177 4.177 21 N -0.304 5.304 22 C -0.353 4.353 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.558 5.558 26 Si 0.741 3.259 27 H -0.217 1.217 28 H -0.207 1.207 29 H -0.218 1.218 30 C -0.129 4.129 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.286 0.714 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.013 16.957 -11.725 21.216 hybrid contribution 0.500 -1.031 0.244 1.171 sum -4.513 15.926 -11.481 20.145 Atomic orbital electron populations 1.20772 0.91330 1.02792 1.02057 1.19818 0.95893 0.93049 0.99615 1.20827 0.93479 0.97331 1.02666 1.19812 0.93806 0.95117 0.99725 1.20765 0.99975 0.94127 1.02031 1.20811 0.99439 0.91449 1.01222 1.19249 0.93476 0.93614 0.98677 1.20735 1.01953 0.96107 0.95923 1.20627 0.78528 0.81982 0.90671 1.90671 1.51318 1.54520 1.45982 1.49069 1.56778 1.23491 1.11708 1.21061 0.95618 0.97248 0.82230 1.22454 0.97099 0.93428 1.03320 1.21633 0.86746 0.97795 0.86436 0.86933 1.23322 0.96064 0.99629 1.02198 1.23172 0.97799 0.99149 0.99869 1.21539 0.96172 0.87422 0.90719 0.91426 1.22502 0.95078 0.98293 1.01862 1.45156 1.07527 1.16086 1.61652 1.18989 0.90983 1.01802 1.23492 0.90706 1.24840 0.95746 0.99972 0.99569 1.69839 1.03030 1.35429 1.47470 0.86149 0.78203 0.82987 0.78569 1.21668 1.20706 1.21758 1.20833 0.93406 0.97572 1.01057 0.91349 0.91494 0.91703 0.86470 0.91371 0.91705 0.91563 0.86414 0.88319 0.88227 0.71433 0.90084 0.89818 0.93948 0.92256 0.90510 0.90353 0.92175 0.90962 0.93485 0.93636 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 2 C -0.08 -0.96 5.88 -104.63 -0.62 -1.57 16 3 C -0.12 -1.37 9.36 -39.59 -0.37 -1.74 16 4 C -0.08 -0.95 5.88 -104.63 -0.62 -1.57 16 5 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 6 C -0.11 -1.36 9.36 -39.58 -0.37 -1.73 16 7 C -0.05 -0.64 4.37 -104.62 -0.46 -1.09 16 8 C -0.11 -1.25 5.83 -29.04 -0.17 -1.42 16 9 C 0.50 7.83 7.82 -10.99 -0.09 7.74 16 10 O -0.55 -10.83 15.36 5.56 0.09 -10.75 16 11 N -0.74 -11.58 2.78 -53.66 -0.15 -11.73 16 12 C 0.14 2.66 3.15 -67.78 -0.21 2.45 16 13 C -0.12 -2.58 5.44 -26.00 -0.14 -2.72 16 14 C 0.18 3.94 3.19 -65.44 -0.21 3.74 16 15 H 0.11 2.85 6.29 -51.93 -0.33 2.52 16 16 C -0.17 -2.95 5.73 -25.47 -0.15 -3.09 16 17 C -0.16 -2.55 5.73 -25.47 -0.15 -2.69 16 18 C 0.15 2.88 4.33 -65.71 -0.28 2.60 16 19 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 20 C -0.14 -2.53 5.49 -26.26 -0.14 -2.68 16 21 N -0.58 -13.65 2.81 -152.42 -0.43 -14.08 16 22 C -0.22 -5.89 10.38 -15.06 -0.16 -6.04 16 23 H 0.08 1.93 7.84 -52.49 -0.41 1.51 16 24 C 0.00 -0.11 5.43 -17.43 -0.09 -0.21 16 25 N -0.91 -25.12 10.62 55.49 0.59 -24.53 16 26 Si 0.91 21.32 29.56 -169.99 -5.03 16.30 16 27 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 C -0.11 -1.38 9.36 -39.58 -0.37 -1.75 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 37 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 38 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 40 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.43 6.04 1.90 -65.56 -0.12 5.91 16 42 H 0.08 1.64 6.89 -51.92 -0.36 1.28 16 43 H 0.08 2.04 8.05 -51.93 -0.42 1.62 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 1.17 5.28 -51.92 -0.27 0.89 16 47 H 0.08 1.09 5.26 -51.93 -0.27 0.81 16 48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 51 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 52 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -30.69 396.86 -11.31 -42.00 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -8.49 Total: 9.79 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: -3.87 Total: -12.99 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.01 Total: -50.33 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.69 -11.31 -42.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021368768.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.167 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds