Wall clock time and date at job start Wed Apr 1 2020 03:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 109.47255 * 2 1 4 4 C 1.38236 * 119.99881 * 90.00784 * 3 2 1 5 5 C 1.38232 * 119.99842 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00351 * 359.97438 * 5 4 3 7 7 C 1.50694 * 120.00369 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47462 * 89.99878 * 7 6 5 9 9 O 1.21283 * 119.99417 * 0.02562 * 8 7 6 10 10 N 1.34765 * 120.00539 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00445 * 179.97438 * 10 8 7 12 12 C 1.53144 * 109.43722 * 204.99725 * 11 10 8 13 13 C 1.53707 * 108.87755 * 186.03980 * 12 11 10 14 14 H 1.09005 * 112.09978 * 187.61957 * 13 12 11 15 15 C 1.54604 * 108.37266 * 311.98036 * 13 12 11 16 16 C 1.54305 * 104.75306 * 88.89460 * 15 13 12 17 17 C 1.54617 * 104.75063 * 359.97438 * 16 15 13 18 18 H 1.08999 * 112.18558 * 146.80088 * 17 16 15 19 19 C 1.53613 * 110.01196 * 83.97301 * 11 10 8 20 20 N 1.48287 * 104.25627 * 25.14096 * 17 16 15 21 21 C 1.36940 * 128.20937 * 138.41753 * 20 17 16 22 22 H 1.07999 * 120.00241 * 195.11742 * 21 20 17 23 23 C 1.38816 * 119.99959 * 15.10863 * 21 20 17 24 24 N 1.31615 * 119.99892 * 9.27541 * 23 21 20 25 25 Si 1.86801 * 119.99995 * 189.27163 * 23 21 20 26 26 H 1.48506 * 109.46753 * 90.00222 * 25 23 21 27 27 H 1.48499 * 109.47074 * 210.00047 * 25 23 21 28 28 H 1.48501 * 109.46971 * 330.00552 * 25 23 21 29 29 C 1.38238 * 119.99764 * 0.25418 * 6 5 4 30 30 C 1.38238 * 119.99948 * 270.01929 * 3 2 1 31 31 H 1.09008 * 109.46969 * 300.00260 * 1 2 3 32 32 H 1.09005 * 109.47176 * 59.99351 * 1 2 3 33 33 H 1.08991 * 109.47536 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47027 * 239.99965 * 2 1 3 35 35 H 1.09004 * 109.46549 * 120.00226 * 2 1 3 36 36 H 1.07997 * 120.00211 * 359.97438 * 4 3 2 37 37 H 1.08007 * 120.00093 * 179.97438 * 5 4 3 38 38 H 1.09001 * 109.47130 * 330.00375 * 7 6 5 39 39 H 1.08997 * 109.47446 * 209.99700 * 7 6 5 40 40 H 0.97001 * 120.00172 * 359.97438 * 10 8 7 41 41 H 1.08997 * 109.39867 * 324.89367 * 11 10 8 42 42 H 1.08999 * 109.56534 * 66.22506 * 12 11 10 43 43 H 1.09001 * 109.67220 * 305.92300 * 12 11 10 44 44 H 1.09003 * 110.38536 * 330.07435 * 15 13 12 45 45 H 1.08998 * 110.38517 * 207.71138 * 15 13 12 46 46 H 1.09010 * 110.38390 * 241.18295 * 16 15 13 47 47 H 1.09002 * 110.38895 * 118.81840 * 16 15 13 48 48 H 1.08999 * 108.59409 * 53.84525 * 19 11 10 49 49 H 1.08995 * 110.13482 * 293.73701 * 19 11 10 50 50 H 0.96995 * 119.99815 * 179.97438 * 24 23 21 51 51 H 1.07997 * 119.99774 * 179.72477 * 29 6 5 52 52 H 1.07999 * 120.00199 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2629 2.0723 1.1972 5 6 2.7232 3.3757 1.1972 6 6 2.9535 4.0275 0.0000 7 6 3.4547 5.4486 0.0000 8 6 4.9618 5.4499 0.0005 9 8 5.5689 4.4000 0.0003 10 7 5.6348 6.6174 0.0011 11 6 7.0998 6.6186 0.0021 12 6 7.6079 7.9278 0.6129 13 6 9.1374 7.9826 0.4700 14 1 9.5691 8.8289 1.0044 15 6 9.7199 6.6322 0.9468 16 6 9.7311 5.7421 -0.3135 17 6 9.1535 6.6381 -1.4334 18 1 9.5985 6.4213 -2.4046 19 6 7.6266 6.4676 -1.4330 20 7 9.4421 8.0203 -0.9805 21 6 9.8849 9.0807 -1.7254 22 1 10.2841 9.9561 -1.2348 23 6 9.8207 9.0303 -3.1112 24 7 9.1721 8.0509 -3.7047 25 14 10.6547 10.3527 -4.1335 26 1 12.0503 9.9415 -4.4311 27 1 9.9111 10.5376 -5.4055 28 1 10.6659 11.6302 -3.3763 29 6 2.7184 3.3775 -1.1971 30 6 2.2624 2.0725 -1.1972 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5140 -0.8900 33 1 -0.3634 -1.0275 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 2.0826 1.5633 2.1325 37 1 2.9030 3.8850 2.1325 38 1 3.0908 5.9623 0.8899 39 1 3.0914 5.9621 -0.8901 40 1 5.1492 7.4572 0.0008 41 1 7.4620 5.7778 0.5935 42 1 7.3382 7.9672 1.6682 43 1 7.1619 8.7740 0.0902 44 1 9.0831 6.1941 1.7154 45 1 10.7333 6.7681 1.3245 46 1 9.0996 4.8660 -0.1652 47 1 10.7499 5.4400 -0.5561 48 1 7.1726 7.2407 -2.0530 49 1 7.3690 5.4841 -1.8257 50 1 9.1269 8.0160 -4.6730 51 1 2.8941 3.8882 -2.1324 52 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021395673.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:32 Heat of formation + Delta-G solvation = -0.894213 kcal Electronic energy + Delta-G solvation = -30084.856068 eV Core-core repulsion = 26241.852474 eV Total energy + Delta-G solvation = -3843.003593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.14365 -39.44537 -38.34185 -34.81316 -34.28890 -32.62203 -31.51485 -30.94320 -30.23703 -29.63411 -29.15964 -27.14637 -24.63026 -23.47421 -23.30712 -22.77291 -21.72330 -20.68344 -20.01943 -19.25605 -18.58919 -17.15507 -16.53381 -16.32356 -15.91906 -15.78308 -15.17439 -14.70948 -14.59639 -14.07258 -14.00190 -13.87519 -13.78602 -13.36866 -13.04760 -13.01887 -12.93689 -12.79348 -12.27956 -12.13659 -11.96168 -11.81063 -11.79852 -11.46939 -11.37128 -11.33009 -11.02567 -10.94469 -10.90070 -10.78873 -10.65930 -10.60894 -10.09788 -9.75016 -9.63946 -9.54816 -9.39144 -9.30126 -8.90715 -8.70946 -8.51866 -8.34093 -6.81965 -5.75724 -3.11009 1.28841 1.41918 2.96465 3.37957 3.44005 3.45304 3.46717 3.88221 4.46764 4.55473 4.67133 4.74174 4.91459 4.97244 5.12007 5.13856 5.23901 5.29500 5.33138 5.39436 5.41333 5.48428 5.54546 5.56124 5.65392 5.75636 5.76193 5.81196 5.90403 5.93611 5.98304 6.03822 6.04917 6.05853 6.24326 6.32403 6.38469 6.48881 6.54690 6.56894 6.59219 6.69832 6.71426 6.79229 6.89410 6.98485 7.00224 7.07757 7.24335 7.58842 7.61673 7.79082 7.91668 8.25264 8.59726 9.14253 9.76472 10.55796 11.36293 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.019482 B = 0.002300 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.892462 B =12169.049945 C =12693.361957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.118 4.118 5 C -0.103 4.103 6 C -0.063 4.063 7 C -0.105 4.105 8 C 0.510 3.490 9 O -0.535 6.535 10 N -0.724 5.724 11 C 0.146 3.854 12 C -0.133 4.133 13 C 0.151 3.849 14 H 0.068 0.932 15 C -0.130 4.130 16 C -0.145 4.145 17 C 0.183 3.817 18 H 0.110 0.890 19 C -0.119 4.119 20 N -0.584 5.584 21 C -0.223 4.223 22 H 0.074 0.926 23 C -0.005 4.005 24 N -0.910 5.910 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.101 4.101 30 C -0.117 4.117 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.394 0.606 41 H 0.079 0.921 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.071 0.929 49 H 0.043 0.957 50 H 0.252 0.748 51 H 0.120 0.880 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.024 -9.661 9.493 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.087 4.087 4 C -0.136 4.136 5 C -0.121 4.121 6 C -0.064 4.064 7 C -0.145 4.145 8 C 0.296 3.704 9 O -0.412 6.412 10 N -0.374 5.374 11 C 0.043 3.957 12 C -0.173 4.173 13 C 0.042 3.958 14 H 0.086 0.914 15 C -0.169 4.169 16 C -0.184 4.184 17 C 0.075 3.925 18 H 0.127 0.873 19 C -0.159 4.159 20 N -0.305 5.305 21 C -0.351 4.351 22 H 0.092 0.908 23 C -0.202 4.202 24 N -0.556 5.556 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.119 4.119 30 C -0.135 4.135 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.227 0.773 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.138 0.862 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.532 -10.298 9.229 20.796 hybrid contribution 0.107 1.186 -0.630 1.347 sum -15.425 -9.112 8.599 19.872 Atomic orbital electron populations 1.21745 0.94872 1.01514 1.02167 1.20529 0.96009 0.92888 1.02784 1.19843 0.99546 0.96055 0.93279 1.20915 1.00559 0.94773 0.97366 1.20929 0.98978 0.94902 0.97314 1.19274 0.98725 0.94841 0.93530 1.20716 0.93455 0.95419 1.04946 1.20395 0.89237 0.84191 0.76602 1.90711 1.70104 1.31251 1.49090 1.46333 1.08440 1.07846 1.74756 1.21329 0.77083 0.98331 0.98919 1.22464 0.99818 0.96784 0.98281 1.21499 0.91002 0.95292 0.88016 0.91359 1.22620 0.99857 0.97181 0.97269 1.22810 1.00324 0.98146 0.97123 1.21466 0.91091 0.83094 0.96815 0.87277 1.22428 0.99304 1.00343 0.93831 1.45204 1.76082 1.06978 1.02253 1.18977 1.33072 0.95131 0.87969 0.90775 1.24840 1.00184 0.98547 0.96664 1.69884 1.44262 1.32947 1.08516 0.86176 0.79004 0.81049 0.79830 1.21659 1.21836 1.20740 1.20988 0.98550 0.94888 0.97501 1.20946 1.00342 0.94740 0.97432 0.92621 0.92583 0.92553 0.91109 0.91163 0.86382 0.86382 0.88346 0.88156 0.77315 0.90308 0.93447 0.91657 0.92729 0.92740 0.92491 0.92954 0.91033 0.93874 0.93734 0.86181 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.08 -0.70 6.06 -27.89 -0.17 -0.87 16 3 C -0.09 -0.94 5.13 -104.63 -0.54 -1.48 16 4 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 5 C -0.10 -1.22 9.70 -39.58 -0.38 -1.60 16 6 C -0.06 -0.79 4.37 -104.63 -0.46 -1.25 16 7 C -0.11 -1.19 5.83 -29.03 -0.17 -1.36 16 8 C 0.51 7.96 7.79 -10.99 -0.09 7.87 16 9 O -0.54 -10.60 15.70 5.55 0.09 -10.51 16 10 N -0.72 -11.05 5.11 -53.43 -0.27 -11.33 16 11 C 0.15 2.68 2.10 -67.54 -0.14 2.53 16 12 C -0.13 -2.35 5.12 -26.29 -0.13 -2.49 16 13 C 0.15 2.99 4.28 -65.75 -0.28 2.71 16 14 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 15 C -0.13 -2.37 5.99 -25.21 -0.15 -2.52 16 16 C -0.14 -2.91 5.99 -25.20 -0.15 -3.06 16 17 C 0.18 4.28 3.13 -65.76 -0.21 4.07 16 18 H 0.11 2.94 6.35 -51.93 -0.33 2.61 16 19 C -0.12 -2.60 5.13 -26.08 -0.13 -2.73 16 20 N -0.58 -14.13 2.81 -152.81 -0.43 -14.56 16 21 C -0.22 -5.95 10.38 -15.06 -0.16 -6.10 16 22 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 23 C -0.01 -0.14 5.42 -17.43 -0.09 -0.24 16 24 N -0.91 -25.63 10.60 55.49 0.59 -25.04 16 25 Si 0.91 21.56 29.56 -169.99 -5.03 16.54 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 30 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 31 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 38 H 0.10 0.86 8.09 -51.93 -0.42 0.44 16 39 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 40 H 0.39 4.94 8.60 -40.82 -0.35 4.59 16 41 H 0.08 1.54 5.05 -51.93 -0.26 1.28 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.05 0.90 7.08 -51.93 -0.37 0.53 16 45 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 1.11 7.09 -51.92 -0.37 0.74 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.07 1.77 8.01 -51.93 -0.42 1.35 16 49 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 52 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 406.72 15.07 6.13 6.13 Total: -1.00 -31.37 406.72 -11.78 -43.14 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.82 Total: 7.83 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -4.04 Total: -12.20 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.11 Total: -50.93 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.37 -11.78 -43.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021395673.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.250 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds