Wall clock time and date at job start Wed Apr 1 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38233 * 120.00342 * 2 1 4 4 C 1.38229 * 120.00630 * 179.97438 * 3 2 1 5 5 C 1.38241 * 119.99528 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99771 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47309 * 90.00380 * 6 5 4 8 8 O 1.21284 * 119.99763 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99994 * 179.97438 * 7 6 5 10 10 C 1.46946 * 120.84489 * 359.72175 * 9 7 6 11 11 C 1.53615 * 108.77118 * 125.93527 * 10 9 7 12 12 C 1.53120 * 109.40174 * 54.31435 * 11 10 9 13 13 C 1.52851 * 109.34499 * 299.21106 * 12 11 10 14 14 H 1.09004 * 108.58745 * 302.88850 * 13 12 11 15 15 C 1.52850 * 109.62163 * 182.81815 * 13 12 11 16 16 N 1.46886 * 109.75434 * 291.90492 * 15 13 12 17 17 C 1.36933 * 120.77297 * 127.08263 * 16 15 13 18 18 H 1.08005 * 120.00076 * 207.53262 * 17 16 15 19 19 C 1.38810 * 120.00172 * 27.53014 * 17 16 15 20 20 N 1.31623 * 119.99897 * 17.32374 * 19 17 16 21 21 Si 1.86800 * 120.00090 * 197.32726 * 19 17 16 22 22 H 1.48491 * 109.47436 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47274 * 119.99970 * 21 19 17 24 24 H 1.48506 * 109.47131 * 239.99710 * 21 19 17 25 25 C 1.46972 * 118.45681 * 307.10126 * 16 15 13 26 26 C 1.53104 * 108.61711 * 54.31027 * 25 16 15 27 27 C 1.47305 * 120.84107 * 179.97438 * 9 7 6 28 28 H 1.08996 * 110.07353 * 355.06559 * 27 9 7 29 29 C 1.38230 * 120.00415 * 0.27987 * 5 4 3 30 30 C 1.38238 * 119.99598 * 359.53246 * 29 5 4 31 31 H 1.08996 * 109.47004 * 89.99659 * 1 2 3 32 32 H 1.08999 * 109.47031 * 210.00087 * 1 2 3 33 33 H 1.09002 * 109.46809 * 329.99586 * 1 2 3 34 34 H 1.08002 * 119.99591 * 0.02562 * 3 2 1 35 35 H 1.08000 * 120.00894 * 180.02562 * 4 3 2 36 36 H 1.09003 * 109.46730 * 210.00543 * 6 5 4 37 37 H 1.09000 * 109.47181 * 329.99721 * 6 5 4 38 38 H 1.08994 * 109.54439 * 245.84735 * 10 9 7 39 39 H 1.09004 * 109.54569 * 6.12255 * 10 9 7 40 40 H 1.08995 * 109.61915 * 294.26659 * 11 10 9 41 41 H 1.08999 * 109.39570 * 174.22397 * 11 10 9 42 42 H 1.08997 * 109.49189 * 179.25014 * 12 11 10 43 43 H 1.09000 * 109.48981 * 59.17279 * 12 11 10 44 44 H 1.09001 * 108.88592 * 172.03366 * 15 13 12 45 45 H 1.09000 * 109.64041 * 52.23963 * 15 13 12 46 46 H 0.97003 * 119.99703 * 179.97438 * 20 19 17 47 47 H 1.08992 * 109.61602 * 294.57061 * 25 16 15 48 48 H 1.09003 * 109.75454 * 174.13218 * 25 16 15 49 49 H 1.09001 * 109.45140 * 184.61653 * 26 25 16 50 50 H 1.08998 * 109.45005 * 64.68228 * 26 25 16 51 51 H 1.07994 * 120.00299 * 179.72564 * 29 5 4 52 52 H 1.08003 * 120.00027 * 180.23290 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 5.7787 0.0000 0.0028 7 6 6.2800 0.0005 1.4239 8 8 5.4911 0.0013 2.3452 9 7 7.6049 0.0001 1.6712 10 6 8.5769 -0.0070 0.5692 11 6 9.5456 1.1704 0.7569 12 6 10.1697 1.0980 2.1533 13 6 9.0659 1.1913 3.2066 14 1 8.5117 2.1165 3.0480 15 6 9.6876 1.1903 4.6030 16 7 10.2830 -0.1236 4.8803 17 6 11.5851 -0.2302 5.2906 18 1 12.1477 -1.1264 5.0746 19 6 12.1820 0.8137 5.9841 20 7 11.4367 1.7432 6.5437 21 14 14.0428 0.8993 6.1231 22 1 14.6460 -0.2569 5.4130 23 1 14.5272 2.1634 5.5124 24 1 14.4346 0.8594 7.5550 25 6 9.4489 -1.3211 4.7069 26 6 8.8686 -1.3116 3.2901 27 6 8.1152 0.0012 3.0530 28 1 7.2881 0.0903 3.7572 29 6 3.5806 -1.1972 -0.0037 30 6 2.1982 -1.1972 -0.0003 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6582 2.1324 0.0004 35 1 4.1206 2.1324 0.0010 36 1 6.1424 -0.8903 -0.5105 37 1 6.1425 0.8897 -0.5112 38 1 9.1321 -0.9449 0.5788 39 1 8.0524 0.0982 -0.3805 40 1 9.0044 2.1103 0.6491 41 1 10.3321 1.1156 0.0042 42 1 10.8673 1.9253 2.2832 43 1 10.7007 0.1527 2.2658 44 1 8.9086 1.3992 5.3362 45 1 10.4582 1.9590 4.6615 46 1 11.8539 2.4724 7.0286 47 1 8.6375 -1.3105 5.4346 48 1 10.0551 -2.2160 4.8479 49 1 8.1824 -2.1504 3.1733 50 1 9.6780 -1.4015 2.5657 51 1 4.1206 -2.1324 -0.0073 52 1 1.6582 -2.1325 -0.0007 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021621938.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:13 Heat of formation + Delta-G solvation = -14.635036 kcal Electronic energy + Delta-G solvation = -30665.058514 eV Core-core repulsion = 26821.459074 eV Total energy + Delta-G solvation = -3843.599440 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.69157 -40.36161 -39.21262 -37.05584 -34.82977 -34.23084 -33.93727 -31.98149 -31.78370 -31.22865 -30.30911 -27.38220 -26.73324 -25.75868 -23.97991 -23.60935 -23.52709 -22.81028 -21.84652 -20.32091 -19.39214 -18.51785 -18.09210 -17.20208 -16.95305 -16.75926 -16.49724 -16.06356 -15.90055 -15.79198 -15.38866 -15.15487 -15.01746 -14.64477 -14.42283 -14.27661 -14.19188 -14.05830 -13.84033 -13.60921 -13.51412 -13.28761 -13.15649 -12.92780 -12.71639 -12.68201 -12.60521 -12.49137 -12.20448 -11.98583 -11.94179 -11.81622 -11.79358 -11.75782 -11.43222 -11.31930 -11.07161 -10.73653 -10.53583 -9.78044 -9.51094 -9.36131 -8.69801 -7.86816 -5.32114 0.41540 0.54774 1.46545 1.48649 1.59079 1.68842 2.04237 2.51445 2.87690 3.28789 3.59948 3.65736 3.73371 3.91443 3.96775 3.97622 4.03899 4.10760 4.13690 4.17169 4.24749 4.30438 4.38768 4.49879 4.56433 4.61723 4.63467 4.64730 4.67895 4.73354 4.84543 4.87741 4.88861 4.96456 4.98696 5.00633 5.04626 5.13105 5.16005 5.22309 5.23408 5.30936 5.31463 5.45966 5.52496 5.60139 5.64296 5.67979 5.70325 5.70781 5.73048 6.16553 6.38275 6.55765 7.13798 7.25085 7.83874 8.38156 9.20383 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.002396 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.260411 B =11684.056786 C =11912.663301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.134 4.134 4 C -0.118 4.118 5 C -0.086 4.086 6 C -0.091 4.091 7 C 0.509 3.491 8 O -0.588 6.588 9 N -0.605 5.605 10 C 0.103 3.897 11 C -0.126 4.126 12 C -0.099 4.099 13 C -0.104 4.104 14 H 0.052 0.948 15 C 0.188 3.812 16 N -0.600 5.600 17 C -0.252 4.252 18 H 0.071 0.929 19 C -0.052 4.052 20 N -0.939 5.939 21 Si 0.966 3.034 22 H -0.263 1.263 23 H -0.290 1.290 24 H -0.297 1.297 25 C 0.142 3.858 26 C -0.121 4.121 27 C 0.163 3.837 28 H 0.056 0.944 29 C -0.116 4.116 30 C -0.132 4.132 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.063 0.937 44 H -0.023 1.023 45 H 0.062 0.938 46 H 0.249 0.751 47 H 0.003 0.997 48 H 0.064 0.936 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.130 0.870 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 -3.976 -22.017 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.151 4.151 4 C -0.136 4.136 5 C -0.086 4.086 6 C -0.130 4.130 7 C 0.299 3.701 8 O -0.469 6.469 9 N -0.337 5.337 10 C -0.019 4.019 11 C -0.164 4.164 12 C -0.137 4.137 13 C -0.125 4.125 14 H 0.071 0.929 15 C 0.062 3.938 16 N -0.323 5.323 17 C -0.382 4.382 18 H 0.089 0.911 19 C -0.247 4.247 20 N -0.585 5.585 21 Si 0.794 3.206 22 H -0.187 1.187 23 H -0.217 1.217 24 H -0.224 1.224 25 C 0.015 3.985 26 C -0.161 4.161 27 C 0.060 3.940 28 H 0.075 0.925 29 C -0.134 4.134 30 C -0.150 4.150 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.143 0.857 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.083 0.917 41 H 0.117 0.883 42 H 0.063 0.937 43 H 0.081 0.919 44 H -0.005 1.005 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.021 0.979 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.147 0.853 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.693 -3.873 -21.467 26.301 hybrid contribution 0.974 0.534 1.302 1.711 sum -13.720 -3.339 -20.165 24.617 Atomic orbital electron populations 1.20817 0.89524 1.03321 1.03130 1.20281 0.97510 0.93119 0.99187 1.21252 0.94149 0.98455 1.01289 1.21212 0.94883 0.97839 0.99712 1.19518 0.94569 0.93784 1.00728 1.20754 0.92292 1.07480 0.92450 1.21246 0.81417 0.75078 0.92330 1.90698 1.55960 1.51888 1.48320 1.48543 1.05679 1.72190 1.07277 1.22137 0.90802 0.99396 0.89528 1.22004 0.99279 0.98603 0.96491 1.21370 0.96442 1.01884 0.94011 1.21784 0.96556 0.96636 0.97487 0.92910 1.20417 0.94566 0.88482 0.90357 1.44208 1.09448 1.01142 1.77510 1.19516 0.87579 1.02966 1.28131 0.91083 1.25802 1.02073 0.99389 0.97467 1.70219 1.35153 1.15630 1.37510 0.85223 0.80809 0.77726 0.76796 1.18669 1.21703 1.22428 1.20997 0.93145 0.90362 0.93956 1.22161 0.99490 0.95999 0.98428 1.20881 0.94755 0.95348 0.83042 0.92543 1.21221 0.94836 0.97812 0.99545 1.21271 0.94180 0.98414 1.01168 0.89947 0.91000 0.91135 0.84764 0.85653 0.85183 0.85542 0.90176 0.86190 0.91700 0.88289 0.93685 0.91869 1.00451 0.91999 0.94237 0.97949 0.91761 0.91588 0.90322 0.85255 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 71.24 0.71 -0.75 16 2 C -0.10 -1.96 5.88 -19.87 -0.12 -2.07 16 3 C -0.13 -2.73 9.70 22.27 0.22 -2.51 16 4 C -0.12 -2.62 9.70 22.27 0.22 -2.40 16 5 C -0.09 -1.89 4.37 -19.86 -0.09 -1.97 16 6 C -0.09 -1.63 4.18 29.10 0.12 -1.51 16 7 C 0.51 14.42 7.70 87.66 0.67 15.09 16 8 O -0.59 -22.89 15.49 -3.04 -0.05 -22.94 16 9 N -0.61 -16.44 2.65 -793.06 -2.10 -18.54 16 10 C 0.10 1.89 5.89 86.50 0.51 2.40 16 11 C -0.13 -2.65 6.10 30.84 0.19 -2.46 16 12 C -0.10 -3.21 4.84 30.58 0.15 -3.06 16 13 C -0.10 -3.98 2.50 -10.86 -0.03 -4.01 16 14 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 15 C 0.19 9.36 4.65 86.26 0.40 9.76 16 16 N -0.60 -30.05 2.67 -699.92 -1.87 -31.92 16 17 C -0.25 -13.59 9.60 84.03 0.81 -12.78 16 18 H 0.07 3.70 7.89 -2.91 -0.02 3.68 16 19 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 20 N -0.94 -56.19 11.18 21.65 0.24 -55.95 16 21 Si 0.97 44.49 29.59 68.60 2.03 46.52 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 C 0.14 6.02 6.51 86.32 0.56 6.58 16 26 C -0.12 -4.15 5.04 30.70 0.15 -3.99 16 27 C 0.16 5.83 2.61 44.94 0.12 5.95 16 28 H 0.06 2.43 7.06 -2.39 -0.02 2.42 16 29 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16 30 C -0.13 -2.63 9.70 22.27 0.22 -2.42 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 33 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 34 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 35 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.13 1.55 7.87 -2.39 -0.02 1.53 16 37 H 0.13 1.61 7.67 -2.39 -0.02 1.59 16 38 H 0.08 1.38 7.25 -2.39 -0.02 1.36 16 39 H 0.12 1.25 5.96 -2.39 -0.01 1.24 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 2.21 6.22 -2.39 -0.01 2.19 16 44 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 16 45 H 0.06 3.44 6.03 -2.39 -0.01 3.42 16 46 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 47 H 0.00 0.11 8.14 -2.39 -0.02 0.10 16 48 H 0.06 2.60 7.94 -2.39 -0.02 2.58 16 49 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.08 2.51 5.41 -2.39 -0.01 2.50 16 51 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 52 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -73.77 397.66 4.60 -69.17 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.89 Total: 18.57 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 5.45 Total: -4.92 kcal Atomic # 7 Polarization: -102.68 SS G_CDS: -3.73 Total: -106.41 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -73.77 4.60 -69.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021621938.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.537 kcal (2) G-P(sol) polarization free energy of solvation -73.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds