Wall clock time and date at job start Wed Apr 1 2020 01:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38238 * 120.00241 * 2 1 4 4 C 1.38234 * 120.00244 * 180.02562 * 3 2 1 5 5 C 1.38232 * 119.99823 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99938 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47227 * 89.99903 * 6 5 4 8 8 O 1.21278 * 120.00132 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99746 * 180.02562 * 7 6 5 10 10 C 1.47062 * 120.84420 * 354.95087 * 9 7 6 11 11 C 1.53127 * 109.05654 * 126.56760 * 10 9 7 12 12 C 1.53144 * 109.61362 * 53.98949 * 11 10 9 13 13 C 1.52813 * 109.25937 * 299.15160 * 12 11 10 14 14 H 1.09004 * 109.46807 * 302.01832 * 13 12 11 15 15 C 1.53057 * 110.34648 * 181.48912 * 13 12 11 16 16 N 1.47076 * 108.33362 * 184.53106 * 15 13 12 17 17 C 1.36936 * 120.47822 * 233.30843 * 16 15 13 18 18 H 1.07999 * 119.99983 * 144.17545 * 17 16 15 19 19 C 1.38807 * 119.99805 * 324.17643 * 17 16 15 20 20 N 1.31628 * 120.00211 * 359.37986 * 19 17 16 21 21 Si 1.86804 * 120.00068 * 179.38514 * 19 17 16 22 22 H 1.48500 * 109.46957 * 59.99952 * 21 19 17 23 23 H 1.48505 * 109.47196 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46907 * 299.99795 * 21 19 17 25 25 C 1.46863 * 119.04572 * 53.32457 * 16 15 13 26 26 C 1.53310 * 109.11329 * 307.34892 * 25 16 15 27 27 C 1.46718 * 120.84087 * 174.92910 * 9 7 6 28 28 H 1.09001 * 109.53018 * 114.57227 * 27 9 7 29 29 C 1.38236 * 120.00111 * 0.25352 * 5 4 3 30 30 C 1.38232 * 120.00070 * 359.49871 * 29 5 4 31 31 H 1.09007 * 109.46908 * 90.00465 * 1 2 3 32 32 H 1.09000 * 109.47158 * 209.99796 * 1 2 3 33 33 H 1.08994 * 109.47316 * 330.00169 * 1 2 3 34 34 H 1.08001 * 119.99202 * 359.97438 * 3 2 1 35 35 H 1.07991 * 119.99781 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.46851 * 329.99546 * 6 5 4 37 37 H 1.09001 * 109.47124 * 210.00338 * 6 5 4 38 38 H 1.09004 * 109.54104 * 6.68898 * 10 9 7 39 39 H 1.08997 * 109.61056 * 246.48556 * 10 9 7 40 40 H 1.09006 * 109.44240 * 293.94572 * 11 10 9 41 41 H 1.08999 * 109.44541 * 174.03611 * 11 10 9 42 42 H 1.09003 * 109.50404 * 59.08848 * 12 11 10 43 43 H 1.08994 * 109.50559 * 179.21423 * 12 11 10 44 44 H 1.09000 * 109.69309 * 64.82166 * 15 13 12 45 45 H 1.09001 * 109.69243 * 304.24175 * 15 13 12 46 46 H 0.97000 * 119.99542 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.52978 * 187.45314 * 25 16 15 48 48 H 1.09009 * 109.53053 * 67.23868 * 25 16 15 49 49 H 1.08999 * 109.55274 * 294.25701 * 26 25 16 50 50 H 1.09001 * 109.56080 * 173.94187 * 26 25 16 51 51 H 1.07999 * 119.99837 * 179.72314 * 29 5 4 52 52 H 1.08000 * 120.00229 * 180.22584 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2716 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 6.2821 0.0006 1.4187 8 8 5.4948 0.0015 2.3411 9 7 7.6074 0.0012 1.6639 10 6 8.5777 -0.1098 0.5643 11 6 9.5735 1.0497 0.6572 12 6 10.1997 1.0788 2.0545 13 6 9.1005 1.2887 3.0952 14 1 8.5700 2.2166 2.8811 15 6 9.7040 1.3588 4.5000 16 7 8.6040 1.4510 5.4720 17 6 8.5795 2.4580 6.3996 18 1 7.6379 2.8963 6.6959 19 6 9.7646 2.9154 6.9589 20 7 10.9110 2.3729 6.6068 21 14 9.7327 4.3008 8.2116 22 1 8.9180 3.8900 9.3833 23 1 11.1184 4.6007 8.6535 24 1 9.1362 5.5125 7.5943 25 6 7.5326 0.4473 5.4336 26 6 6.9693 0.3685 4.0099 27 6 8.1188 0.1132 3.0345 28 1 8.6315 -0.8088 3.3086 29 6 3.5805 -1.1971 -0.0053 30 6 2.1981 -1.1972 0.0004 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 1.6581 2.1324 -0.0004 35 1 4.1204 2.1324 -0.0010 36 1 6.1416 0.8897 -0.5163 37 1 6.1416 -0.8902 -0.5155 38 1 8.0536 -0.0648 -0.3904 39 1 9.1121 -1.0566 0.6423 40 1 9.0539 1.9899 0.4727 41 1 10.3569 0.9159 -0.0888 42 1 10.7064 0.1329 2.2460 43 1 10.9184 1.8960 2.1143 44 1 10.3416 2.2390 4.5823 45 1 10.2904 0.4605 4.6931 46 1 11.7392 2.6923 6.9980 47 1 6.7395 0.7344 6.1240 48 1 7.9334 -0.5248 5.7213 49 1 6.4797 1.3094 3.7587 50 1 6.2493 -0.4475 3.9469 51 1 4.1205 -2.1324 -0.0098 52 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021621940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:19 Heat of formation + Delta-G solvation = 12.603297 kcal Electronic energy + Delta-G solvation = -30825.569516 eV Core-core repulsion = 26983.151219 eV Total energy + Delta-G solvation = -3842.418297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.54905 -39.34842 -37.56695 -35.77249 -33.95290 -32.76724 -32.56586 -30.96996 -30.38385 -29.79351 -28.81728 -25.86280 -25.49654 -24.30774 -22.78725 -22.47673 -22.29869 -21.00666 -20.14321 -19.33435 -18.75638 -16.68243 -16.53811 -16.30374 -15.84209 -15.50138 -15.05019 -14.91305 -14.70050 -14.23565 -14.04745 -13.89879 -13.61151 -13.49326 -13.42283 -13.12671 -12.97610 -12.81568 -12.50887 -12.37804 -12.17433 -12.04260 -11.89674 -11.81447 -11.42467 -11.19307 -11.01029 -10.91544 -10.89135 -10.83512 -10.71883 -10.63352 -10.22913 -9.95827 -9.94710 -9.76696 -9.41012 -8.94179 -8.79094 -8.47574 -8.39308 -8.17110 -6.44927 -5.73866 -3.25901 1.25707 1.38744 2.85251 3.19867 3.41076 3.45255 3.47236 3.73700 4.52209 4.57186 4.69171 4.72389 4.82130 4.92236 4.95460 5.00085 5.07284 5.18384 5.31548 5.34407 5.40584 5.41364 5.43137 5.46984 5.53013 5.60787 5.64767 5.66727 5.73245 5.79289 5.96722 6.00953 6.02047 6.02803 6.19423 6.31024 6.34692 6.40836 6.46585 6.51818 6.52674 6.55499 6.63604 6.73263 6.87832 6.96441 7.03706 7.13056 7.26398 7.44244 7.72552 7.77384 7.84593 8.48613 8.58334 9.30143 9.89589 10.50014 11.33227 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.002889 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.413003 B = 9689.589011 C =10974.268933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.100 4.100 5 C -0.065 4.065 6 C -0.105 4.105 7 C 0.513 3.487 8 O -0.520 6.520 9 N -0.610 5.610 10 C 0.108 3.892 11 C -0.133 4.133 12 C -0.112 4.112 13 C -0.121 4.121 14 H 0.064 0.936 15 C 0.183 3.817 16 N -0.595 5.595 17 C -0.251 4.251 18 H 0.061 0.939 19 C 0.007 3.993 20 N -0.907 5.907 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.139 3.861 26 C -0.120 4.120 27 C 0.159 3.841 28 H 0.062 0.938 29 C -0.102 4.102 30 C -0.120 4.120 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.093 0.907 45 H 0.017 0.983 46 H 0.254 0.746 47 H 0.054 0.946 48 H 0.013 0.987 49 H 0.060 0.940 50 H 0.082 0.918 51 H 0.118 0.882 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 -6.688 -19.687 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.118 4.118 5 C -0.066 4.066 6 C -0.145 4.145 7 C 0.300 3.700 8 O -0.396 6.396 9 N -0.343 5.343 10 C -0.015 4.015 11 C -0.172 4.172 12 C -0.150 4.150 13 C -0.142 4.142 14 H 0.082 0.918 15 C 0.056 3.944 16 N -0.317 5.317 17 C -0.381 4.381 18 H 0.079 0.921 19 C -0.191 4.191 20 N -0.552 5.552 21 Si 0.733 3.267 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.210 1.210 25 C 0.013 3.987 26 C -0.159 4.159 27 C 0.057 3.943 28 H 0.080 0.920 29 C -0.120 4.120 30 C -0.138 4.138 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.072 0.928 48 H 0.031 0.969 49 H 0.079 0.921 50 H 0.100 0.900 51 H 0.136 0.864 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.012 -6.647 -19.096 23.024 hybrid contribution 0.329 0.758 0.595 1.019 sum -10.683 -5.889 -18.501 22.160 Atomic orbital electron populations 1.20773 0.91428 1.02750 1.02015 1.19888 0.95923 0.93293 1.00066 1.20962 0.94070 0.97457 1.01226 1.20960 0.94214 0.97432 0.99218 1.19277 0.93691 0.93530 1.00065 1.20779 0.93107 1.04571 0.96011 1.20401 0.82071 0.76759 0.90729 1.90759 1.55496 1.48747 1.44620 1.48346 1.04989 1.72598 1.08380 1.21711 0.91196 0.99009 0.89634 1.21918 0.98277 0.98438 0.98525 1.21479 0.98204 1.02006 0.93301 1.22295 0.95619 0.97276 0.99012 0.91763 1.20828 0.89755 1.01368 0.82412 1.44034 1.24080 1.28479 1.35126 1.19129 0.92771 1.10772 1.15414 0.92127 1.25304 0.96109 0.99551 0.98138 1.69907 0.97135 1.43225 1.44889 0.86362 0.76563 0.81878 0.81884 1.20850 1.21610 1.20983 1.21147 0.91570 0.91934 0.94079 1.22517 0.95686 1.02838 0.94895 1.21308 0.95746 0.97968 0.79300 0.91970 1.20927 0.94187 0.97293 0.99610 1.20939 0.94050 0.97396 1.01434 0.91411 0.91653 0.91618 0.86242 0.86297 0.88371 0.88505 0.90407 0.91537 0.91807 0.91261 0.92165 0.91602 0.88853 0.96510 0.93582 0.92778 0.96893 0.92130 0.89952 0.86382 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 2 C -0.09 -0.98 5.88 -104.62 -0.62 -1.59 16 3 C -0.12 -1.34 9.70 -39.58 -0.38 -1.72 16 4 C -0.10 -1.21 9.70 -39.59 -0.38 -1.59 16 5 C -0.07 -0.79 4.37 -104.62 -0.46 -1.25 16 6 C -0.10 -1.13 4.19 -29.03 -0.12 -1.25 16 7 C 0.51 7.70 7.58 -10.98 -0.08 7.62 16 8 O -0.52 -9.78 11.70 5.56 0.07 -9.72 16 9 N -0.61 -8.94 2.97 -165.32 -0.49 -9.43 16 10 C 0.11 1.16 6.35 -3.67 -0.02 1.14 16 11 C -0.13 -1.53 6.07 -26.59 -0.16 -1.69 16 12 C -0.11 -1.68 5.24 -26.75 -0.14 -1.82 16 13 C -0.12 -2.30 2.20 -90.55 -0.20 -2.50 16 14 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 15 C 0.18 4.37 4.55 -3.70 -0.02 4.35 16 16 N -0.59 -15.48 2.99 -172.26 -0.52 -16.00 16 17 C -0.25 -7.11 9.53 -15.06 -0.14 -7.25 16 18 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 19 C 0.01 0.21 5.23 -17.43 -0.09 0.12 16 20 N -0.91 -26.35 10.86 55.49 0.60 -25.74 16 21 Si 0.90 22.07 29.55 -169.99 -5.02 17.05 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.14 3.20 6.50 -3.68 -0.02 3.18 16 26 C -0.12 -2.46 3.82 -26.62 -0.10 -2.56 16 27 C 0.16 2.86 2.64 -67.72 -0.18 2.68 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 C -0.10 -1.17 9.70 -39.58 -0.38 -1.56 16 30 C -0.12 -1.30 9.70 -39.58 -0.38 -1.68 16 31 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 33 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.10 0.89 7.85 -51.93 -0.41 0.49 16 37 H 0.10 0.81 7.69 -51.93 -0.40 0.41 16 38 H 0.08 0.62 5.96 -51.93 -0.31 0.31 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.09 2.50 6.14 -51.93 -0.32 2.18 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.05 1.25 7.93 -51.93 -0.41 0.84 16 48 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 49 H 0.06 1.37 7.46 -51.93 -0.39 0.98 16 50 H 0.08 1.70 6.12 -51.93 -0.32 1.38 16 51 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 52 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 397.47 15.07 5.99 5.99 Total: -1.00 -32.44 397.47 -11.76 -44.20 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.86 Total: 1.56 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.53 Total: -7.90 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.40 Total: -51.17 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.72 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.44 -11.76 -44.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021621940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.806 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds