Wall clock time and date at job start Wed Apr 1 2020 01:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38238 * 120.00241 * 2 1 4 4 C 1.38234 * 120.00244 * 180.02562 * 3 2 1 5 5 C 1.38232 * 119.99823 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99938 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47227 * 89.99903 * 6 5 4 8 8 O 1.21278 * 120.00132 * 359.97438 * 7 6 5 9 9 N 1.34782 * 119.99746 * 180.02562 * 7 6 5 10 10 C 1.47062 * 120.84420 * 354.95087 * 9 7 6 11 11 C 1.53127 * 109.05654 * 126.56760 * 10 9 7 12 12 C 1.53144 * 109.61362 * 53.98949 * 11 10 9 13 13 C 1.52813 * 109.25937 * 299.15160 * 12 11 10 14 14 H 1.09004 * 109.46807 * 302.01832 * 13 12 11 15 15 C 1.53057 * 110.34648 * 181.48912 * 13 12 11 16 16 N 1.47076 * 108.33362 * 184.53106 * 15 13 12 17 17 C 1.36936 * 120.47822 * 233.30843 * 16 15 13 18 18 H 1.07999 * 119.99983 * 144.17545 * 17 16 15 19 19 C 1.38807 * 119.99805 * 324.17643 * 17 16 15 20 20 N 1.31628 * 120.00211 * 359.37986 * 19 17 16 21 21 Si 1.86804 * 120.00068 * 179.38514 * 19 17 16 22 22 H 1.48500 * 109.46957 * 59.99952 * 21 19 17 23 23 H 1.48505 * 109.47196 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.46907 * 299.99795 * 21 19 17 25 25 C 1.46863 * 119.04572 * 53.32457 * 16 15 13 26 26 C 1.53310 * 109.11329 * 307.34892 * 25 16 15 27 27 C 1.46718 * 120.84087 * 174.92910 * 9 7 6 28 28 H 1.09001 * 109.53018 * 114.57227 * 27 9 7 29 29 C 1.38236 * 120.00111 * 0.25352 * 5 4 3 30 30 C 1.38232 * 120.00070 * 359.49871 * 29 5 4 31 31 H 1.09007 * 109.46908 * 90.00465 * 1 2 3 32 32 H 1.09000 * 109.47158 * 209.99796 * 1 2 3 33 33 H 1.08994 * 109.47316 * 330.00169 * 1 2 3 34 34 H 1.08001 * 119.99202 * 359.97438 * 3 2 1 35 35 H 1.07991 * 119.99781 * 179.97438 * 4 3 2 36 36 H 1.09003 * 109.46851 * 329.99546 * 6 5 4 37 37 H 1.09001 * 109.47124 * 210.00338 * 6 5 4 38 38 H 1.09004 * 109.54104 * 6.68898 * 10 9 7 39 39 H 1.08997 * 109.61056 * 246.48556 * 10 9 7 40 40 H 1.09006 * 109.44240 * 293.94572 * 11 10 9 41 41 H 1.08999 * 109.44541 * 174.03611 * 11 10 9 42 42 H 1.09003 * 109.50404 * 59.08848 * 12 11 10 43 43 H 1.08994 * 109.50559 * 179.21423 * 12 11 10 44 44 H 1.09000 * 109.69309 * 64.82166 * 15 13 12 45 45 H 1.09001 * 109.69243 * 304.24175 * 15 13 12 46 46 H 0.97000 * 119.99542 * 180.02562 * 20 19 17 47 47 H 1.09002 * 109.52978 * 187.45314 * 25 16 15 48 48 H 1.09009 * 109.53053 * 67.23868 * 25 16 15 49 49 H 1.08999 * 109.55274 * 294.25701 * 26 25 16 50 50 H 1.09001 * 109.56080 * 173.94187 * 26 25 16 51 51 H 1.07999 * 119.99837 * 179.72314 * 29 5 4 52 52 H 1.08000 * 120.00229 * 180.22584 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2716 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 6.2821 0.0006 1.4187 8 8 5.4948 0.0015 2.3411 9 7 7.6074 0.0012 1.6639 10 6 8.5777 -0.1098 0.5643 11 6 9.5735 1.0497 0.6572 12 6 10.1997 1.0788 2.0545 13 6 9.1005 1.2887 3.0952 14 1 8.5700 2.2166 2.8811 15 6 9.7040 1.3588 4.5000 16 7 8.6040 1.4510 5.4720 17 6 8.5795 2.4580 6.3996 18 1 7.6379 2.8963 6.6959 19 6 9.7646 2.9154 6.9589 20 7 10.9110 2.3729 6.6068 21 14 9.7327 4.3008 8.2116 22 1 8.9180 3.8900 9.3833 23 1 11.1184 4.6007 8.6535 24 1 9.1362 5.5125 7.5943 25 6 7.5326 0.4473 5.4336 26 6 6.9693 0.3685 4.0099 27 6 8.1188 0.1132 3.0345 28 1 8.6315 -0.8088 3.3086 29 6 3.5805 -1.1971 -0.0053 30 6 2.1981 -1.1972 0.0004 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 1.6581 2.1324 -0.0004 35 1 4.1204 2.1324 -0.0010 36 1 6.1416 0.8897 -0.5163 37 1 6.1416 -0.8902 -0.5155 38 1 8.0536 -0.0648 -0.3904 39 1 9.1121 -1.0566 0.6423 40 1 9.0539 1.9899 0.4727 41 1 10.3569 0.9159 -0.0888 42 1 10.7064 0.1329 2.2460 43 1 10.9184 1.8960 2.1143 44 1 10.3416 2.2390 4.5823 45 1 10.2904 0.4605 4.6931 46 1 11.7392 2.6923 6.9980 47 1 6.7395 0.7344 6.1240 48 1 7.9334 -0.5248 5.7213 49 1 6.4797 1.3094 3.7587 50 1 6.2493 -0.4475 3.9469 51 1 4.1205 -2.1324 -0.0098 52 1 1.6581 -2.1325 0.0004 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021621940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:17 Heat of formation + Delta-G solvation = -4.001776 kcal Electronic energy + Delta-G solvation = -30826.289566 eV Core-core repulsion = 26983.151219 eV Total energy + Delta-G solvation = -3843.138347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.76722 -40.26987 -38.95467 -37.31113 -34.98330 -34.27006 -34.07474 -32.03364 -31.77635 -31.03167 -30.17409 -27.35854 -26.72627 -25.62518 -24.04433 -23.83188 -23.60007 -21.98393 -21.43922 -21.06007 -19.88742 -18.72665 -17.68066 -17.32290 -16.89230 -16.78990 -16.46674 -16.03521 -15.87328 -15.54376 -15.41774 -15.25965 -15.06760 -14.71169 -14.39246 -14.31220 -14.21513 -13.92463 -13.80450 -13.63815 -13.38296 -13.24571 -13.11552 -12.78417 -12.76027 -12.68281 -12.64079 -12.54628 -12.16411 -12.10335 -12.03816 -11.90636 -11.78877 -11.69115 -11.61210 -11.45782 -11.03587 -10.58526 -10.09472 -9.77295 -9.45844 -9.34005 -8.54476 -7.89074 -5.46462 0.42663 0.55517 1.42947 1.45462 1.52265 1.72846 2.08827 2.46826 2.88565 3.24848 3.62914 3.67232 3.76090 3.89303 3.93453 3.98563 4.09676 4.11653 4.17280 4.19112 4.30814 4.31408 4.36615 4.51510 4.56512 4.62150 4.64114 4.65933 4.73140 4.80449 4.84475 4.87474 4.88589 4.93907 4.97315 5.00415 5.02455 5.14606 5.20238 5.22864 5.31296 5.34688 5.39969 5.44262 5.53441 5.54205 5.62314 5.71409 5.72559 5.73718 5.79757 6.17261 6.41825 6.60173 7.14975 7.33462 7.81406 8.36478 9.14470 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.002889 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.413003 B = 9689.589011 C =10974.268933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.135 4.135 4 C -0.119 4.119 5 C -0.083 4.083 6 C -0.092 4.092 7 C 0.507 3.493 8 O -0.567 6.567 9 N -0.609 5.609 10 C 0.102 3.898 11 C -0.125 4.125 12 C -0.109 4.109 13 C -0.106 4.106 14 H 0.040 0.960 15 C 0.191 3.809 16 N -0.614 5.614 17 C -0.273 4.273 18 H 0.054 0.946 19 C -0.040 4.040 20 N -0.930 5.930 21 Si 0.970 3.030 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.137 3.863 26 C -0.098 4.098 27 C 0.167 3.833 28 H 0.061 0.939 29 C -0.114 4.114 30 C -0.131 4.131 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.059 0.941 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.060 0.940 45 H -0.001 1.001 46 H 0.253 0.747 47 H 0.043 0.957 48 H 0.013 0.987 49 H 0.034 0.966 50 H 0.083 0.917 51 H 0.132 0.868 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 -7.414 -22.411 26.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.153 4.153 4 C -0.137 4.137 5 C -0.083 4.083 6 C -0.132 4.132 7 C 0.296 3.704 8 O -0.446 6.446 9 N -0.342 5.342 10 C -0.019 4.019 11 C -0.163 4.163 12 C -0.148 4.148 13 C -0.127 4.127 14 H 0.058 0.942 15 C 0.066 3.934 16 N -0.338 5.338 17 C -0.403 4.403 18 H 0.071 0.929 19 C -0.236 4.236 20 N -0.575 5.575 21 Si 0.797 3.203 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.203 1.203 25 C 0.011 3.989 26 C -0.137 4.137 27 C 0.063 3.937 28 H 0.079 0.921 29 C -0.132 4.132 30 C -0.149 4.149 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.136 0.864 39 H 0.102 0.898 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.017 0.983 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.031 0.969 49 H 0.053 0.947 50 H 0.102 0.898 51 H 0.150 0.850 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.321 -7.385 -21.870 25.710 hybrid contribution 0.379 0.964 1.473 1.801 sum -10.942 -6.421 -20.397 24.021 Atomic orbital electron populations 1.20815 0.89584 1.03292 1.03110 1.20267 0.97471 0.93114 0.99247 1.21236 0.94165 0.98445 1.01411 1.21180 0.94863 0.97842 0.99847 1.19489 0.94551 0.93666 1.00599 1.20775 0.92257 1.07202 0.92917 1.21196 0.81551 0.75377 0.92234 1.90729 1.56556 1.50787 1.46536 1.48366 1.05918 1.72270 1.07646 1.22087 0.90685 0.99415 0.89741 1.21890 0.99261 0.98731 0.96429 1.21463 0.96743 1.02034 0.94520 1.21996 0.96839 0.96745 0.97150 0.94162 1.20621 0.89035 0.98780 0.85007 1.44299 1.24995 1.28778 1.35691 1.19371 0.92825 1.11763 1.16388 0.92879 1.26033 0.95644 1.02116 0.99833 1.70080 0.97432 1.44466 1.45551 0.85328 0.76586 0.79024 0.79372 1.20355 1.21215 1.20320 1.21228 0.90632 0.91103 0.95903 1.22221 0.96194 1.01409 0.93855 1.20918 0.94281 0.97145 0.81333 0.92057 1.21213 0.94748 0.97773 0.99446 1.21270 0.94234 0.98326 1.01098 0.89948 0.90913 0.91291 0.85054 0.86120 0.86130 0.85120 0.86355 0.89793 0.92237 0.87564 0.91508 0.92333 0.92157 0.98319 0.93791 0.93830 0.96926 0.94717 0.89846 0.85017 0.84455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.23 0.71 -0.85 16 2 C -0.10 -2.03 5.88 -19.87 -0.12 -2.15 16 3 C -0.13 -2.93 9.70 22.27 0.22 -2.71 16 4 C -0.12 -2.79 9.70 22.27 0.22 -2.57 16 5 C -0.08 -1.86 4.37 -19.87 -0.09 -1.94 16 6 C -0.09 -1.69 4.19 29.10 0.12 -1.57 16 7 C 0.51 14.34 7.58 87.66 0.66 15.01 16 8 O -0.57 -21.33 11.70 -3.02 -0.04 -21.36 16 9 N -0.61 -16.61 2.97 -795.34 -2.36 -18.97 16 10 C 0.10 1.75 6.35 86.31 0.55 2.30 16 11 C -0.13 -2.41 6.07 30.68 0.19 -2.23 16 12 C -0.11 -3.16 5.24 30.58 0.16 -3.00 16 13 C -0.11 -4.12 2.20 -10.75 -0.02 -4.14 16 14 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 15 C 0.19 9.58 4.55 86.29 0.39 9.97 16 16 N -0.61 -33.54 2.99 -698.90 -2.09 -35.63 16 17 C -0.27 -16.12 9.53 84.03 0.80 -15.32 16 18 H 0.05 3.13 7.83 -2.91 -0.02 3.11 16 19 C -0.04 -2.33 5.23 84.86 0.44 -1.89 16 20 N -0.93 -55.73 10.86 21.65 0.24 -55.49 16 21 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 C 0.14 6.63 6.50 86.41 0.56 7.19 16 26 C -0.10 -4.14 3.82 30.66 0.12 -4.02 16 27 C 0.17 6.01 2.64 45.01 0.12 6.13 16 28 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 29 C -0.11 -2.42 9.70 22.27 0.22 -2.20 16 30 C -0.13 -2.64 9.70 22.27 0.22 -2.42 16 31 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 0.90 8.09 -2.39 -0.02 0.89 16 33 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 34 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 35 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.12 1.70 7.85 -2.39 -0.02 1.68 16 37 H 0.13 1.52 7.69 -2.39 -0.02 1.50 16 38 H 0.12 1.16 5.96 -2.39 -0.01 1.15 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 3.40 6.14 -2.39 -0.01 3.38 16 45 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.04 2.13 7.93 -2.39 -0.02 2.11 16 48 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 49 H 0.03 1.63 7.46 -2.39 -0.02 1.61 16 50 H 0.08 3.54 6.12 -2.39 -0.01 3.53 16 51 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 52 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -75.12 397.47 4.12 -71.00 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.88 Total: 18.51 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: 5.47 Total: -6.43 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -4.22 Total: -110.09 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.04 Total: -21.36 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.12 4.12 -71.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021621940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.994 kcal (2) G-P(sol) polarization free energy of solvation -75.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds