Wall clock time and date at job start Wed Apr 1 2020 01:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38235 * 120.00151 * 2 1 4 4 C 1.38238 * 119.99666 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00122 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99680 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47131 * 90.00013 * 6 5 4 8 8 O 1.21288 * 120.00138 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99913 * 180.02562 * 7 6 5 10 10 C 1.47065 * 120.84285 * 354.39236 * 9 7 6 11 11 C 1.53126 * 109.04133 * 233.41836 * 10 9 7 12 12 C 1.53145 * 109.61551 * 305.99076 * 11 10 9 13 13 C 1.52825 * 109.27333 * 60.84949 * 12 11 10 14 14 H 1.09000 * 109.47037 * 58.02594 * 13 12 11 15 15 C 1.53067 * 110.33891 * 178.57015 * 13 12 11 16 16 N 1.47068 * 108.33110 * 175.44163 * 15 13 12 17 17 C 1.36936 * 120.46608 * 126.71096 * 16 15 13 18 18 H 1.07997 * 120.00397 * 214.76265 * 17 16 15 19 19 C 1.38819 * 119.99999 * 34.76916 * 17 16 15 20 20 N 1.31623 * 119.99765 * 5.37538 * 19 17 16 21 21 Si 1.86799 * 120.00087 * 185.38118 * 19 17 16 22 22 H 1.48500 * 109.47318 * 89.99501 * 21 19 17 23 23 H 1.48500 * 109.47018 * 209.99717 * 21 19 17 24 24 H 1.48505 * 109.47010 * 329.99523 * 21 19 17 25 25 C 1.46857 * 119.06858 * 306.69465 * 16 15 13 26 26 C 1.53312 * 109.10708 * 52.63074 * 25 16 15 27 27 C 1.46714 * 120.84124 * 174.11987 * 9 7 6 28 28 H 1.08994 * 109.52376 * 245.23176 * 27 9 7 29 29 C 1.38235 * 120.00253 * 0.26888 * 5 4 3 30 30 C 1.38233 * 119.99525 * 359.51622 * 29 5 4 31 31 H 1.09001 * 109.47312 * 89.99591 * 1 2 3 32 32 H 1.08996 * 109.47653 * 209.99749 * 1 2 3 33 33 H 1.09002 * 109.47384 * 330.00363 * 1 2 3 34 34 H 1.07997 * 120.00004 * 359.97438 * 3 2 1 35 35 H 1.08006 * 119.99412 * 180.02562 * 4 3 2 36 36 H 1.08996 * 109.47325 * 329.99565 * 6 5 4 37 37 H 1.08995 * 109.46801 * 209.99767 * 6 5 4 38 38 H 1.09005 * 109.54234 * 353.28868 * 10 9 7 39 39 H 1.09002 * 109.53938 * 113.46389 * 10 9 7 40 40 H 1.09000 * 109.44703 * 66.02933 * 11 10 9 41 41 H 1.08991 * 109.44904 * 185.97413 * 11 10 9 42 42 H 1.08995 * 109.50868 * 180.78995 * 12 11 10 43 43 H 1.09006 * 109.50528 * 300.91284 * 12 11 10 44 44 H 1.09002 * 109.69404 * 295.15462 * 15 13 12 45 45 H 1.09003 * 109.69293 * 55.73282 * 15 13 12 46 46 H 0.97000 * 119.99846 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.53414 * 172.52110 * 25 16 15 48 48 H 1.09001 * 109.53226 * 292.66874 * 25 16 15 49 49 H 1.09007 * 109.55502 * 65.74268 * 26 25 16 50 50 H 1.08997 * 109.56350 * 185.95698 * 26 25 16 51 51 H 1.07996 * 119.99943 * 179.73347 * 29 5 4 52 52 H 1.08003 * 120.00105 * 180.27087 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1970 0.0005 5 6 4.2716 -0.0001 0.0016 6 6 5.7787 -0.0002 0.0016 7 6 6.2810 0.0011 1.4224 8 8 5.4929 0.0024 2.3443 9 7 7.6061 0.0018 1.6687 10 6 8.5770 -0.1220 0.5711 11 6 9.5343 -1.2768 0.8788 12 6 10.1625 -1.0698 2.2600 13 6 9.0596 -1.0490 3.3178 14 1 8.4988 -1.9827 3.2762 15 6 9.6643 -0.8786 4.7136 16 7 8.5645 -0.7542 5.6820 17 6 8.5099 -1.5714 6.7794 18 1 7.5547 -1.9031 7.1588 19 6 9.6824 -1.9736 7.4044 20 7 10.8394 -1.4862 7.0090 21 14 9.6182 -3.2065 8.8062 22 1 9.7299 -4.5830 8.2604 23 1 10.7434 -2.9518 9.7413 24 1 8.3301 -3.0646 9.5315 25 6 7.5258 0.2591 5.4559 26 6 6.9619 0.0924 4.0401 27 6 8.1166 0.1321 3.0380 28 1 8.6638 1.0697 3.1350 29 6 3.5804 -1.1973 -0.0035 30 6 2.1981 -1.1972 0.0005 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1324 -0.0004 35 1 4.1206 2.1324 0.0010 36 1 6.1420 0.8893 -0.5131 37 1 6.1419 -0.8906 -0.5114 38 1 8.0496 -0.3240 -0.3612 39 1 9.1413 0.8059 0.4771 40 1 8.9836 -2.2174 0.8679 41 1 10.3202 -1.3077 0.1242 42 1 10.8540 -1.8853 2.4713 43 1 10.7006 -0.1219 2.2768 44 1 10.2731 -1.7488 4.9589 45 1 10.2802 0.0204 4.7398 46 1 11.6587 -1.7675 7.4455 47 1 6.7256 0.1297 6.1845 48 1 7.9581 1.2541 5.5623 49 1 6.4416 -0.8625 3.9647 50 1 6.2670 0.9044 3.8260 51 1 4.1204 -2.1325 -0.0070 52 1 1.6580 -2.1325 0.0009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021621942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:21 Heat of formation + Delta-G solvation = -4.964304 kcal Electronic energy + Delta-G solvation = -30817.674297 eV Core-core repulsion = 26974.494211 eV Total energy + Delta-G solvation = -3843.180086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -41.75755 -40.26608 -38.94363 -37.30915 -34.97716 -34.26539 -34.08348 -32.02711 -31.77489 -31.03879 -30.17147 -27.35459 -26.72453 -25.61981 -24.05378 -23.82997 -23.60006 -21.96762 -21.45155 -21.07702 -19.87224 -18.73097 -17.63033 -17.30917 -16.90612 -16.78051 -16.46842 -16.05424 -15.87256 -15.54006 -15.47598 -15.27373 -15.06067 -14.72473 -14.39405 -14.28036 -14.12167 -13.93135 -13.82990 -13.63063 -13.41779 -13.23902 -13.13241 -12.79144 -12.77566 -12.69789 -12.66293 -12.50703 -12.17971 -12.09636 -12.03532 -11.90771 -11.79149 -11.71166 -11.57687 -11.42467 -11.03225 -10.60126 -10.14185 -9.77153 -9.44431 -9.33521 -8.56610 -7.89236 -5.45300 0.42825 0.55628 1.42855 1.43551 1.53509 1.74038 2.08488 2.46766 2.88766 3.24668 3.62413 3.67470 3.75944 3.89285 3.93097 3.97864 4.10477 4.12174 4.17108 4.18274 4.30911 4.31920 4.35783 4.51238 4.56870 4.62407 4.64307 4.65885 4.72950 4.80345 4.84381 4.87837 4.88842 4.93111 4.96581 5.00425 5.01715 5.14090 5.17611 5.22974 5.30991 5.33675 5.40231 5.45712 5.52600 5.53552 5.62074 5.70926 5.72153 5.73793 5.78555 6.17376 6.40560 6.60366 7.14221 7.33697 7.81259 8.35846 9.14906 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.002877 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.749430 B = 9729.951066 C =10975.285493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.101 4.101 3 C -0.132 4.132 4 C -0.115 4.115 5 C -0.083 4.083 6 C -0.092 4.092 7 C 0.505 3.495 8 O -0.567 6.567 9 N -0.610 5.610 10 C 0.102 3.898 11 C -0.125 4.125 12 C -0.110 4.110 13 C -0.107 4.107 14 H 0.039 0.961 15 C 0.193 3.807 16 N -0.613 5.613 17 C -0.271 4.271 18 H 0.053 0.947 19 C -0.042 4.042 20 N -0.931 5.931 21 Si 0.970 3.030 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.136 3.864 26 C -0.090 4.090 27 C 0.166 3.834 28 H 0.066 0.934 29 C -0.118 4.118 30 C -0.134 4.134 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.055 0.945 45 H 0.001 0.999 46 H 0.252 0.748 47 H 0.042 0.958 48 H 0.013 0.987 49 H 0.040 0.960 50 H 0.072 0.928 51 H 0.124 0.876 52 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 4.281 -23.640 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.101 4.101 3 C -0.150 4.150 4 C -0.133 4.133 5 C -0.083 4.083 6 C -0.131 4.131 7 C 0.295 3.705 8 O -0.446 6.446 9 N -0.342 5.342 10 C -0.019 4.019 11 C -0.163 4.163 12 C -0.148 4.148 13 C -0.128 4.128 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.337 5.337 17 C -0.401 4.401 18 H 0.071 0.929 19 C -0.238 4.238 20 N -0.576 5.576 21 Si 0.797 3.203 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.198 1.198 25 C 0.010 3.990 26 C -0.129 4.129 27 C 0.062 3.938 28 H 0.084 0.916 29 C -0.136 4.136 30 C -0.152 4.152 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.019 0.981 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.031 0.969 49 H 0.059 0.941 50 H 0.091 0.909 51 H 0.142 0.858 52 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.136 4.263 -23.090 25.987 hybrid contribution 0.358 -0.742 1.579 1.781 sum -10.779 3.521 -21.511 24.317 Atomic orbital electron populations 1.20815 0.89604 1.03279 1.03109 1.20266 0.97464 0.93133 0.99265 1.21263 0.94235 0.98338 1.01165 1.21211 0.94758 0.97814 0.99494 1.19496 0.94594 0.93658 1.00574 1.20775 0.92210 1.07242 0.92856 1.21209 0.81554 0.75502 0.92246 1.90773 1.56516 1.50580 1.46735 1.48366 1.05943 1.72200 1.07736 1.22087 0.90872 0.99612 0.89302 1.21885 0.99468 0.98395 0.96564 1.21470 0.96703 1.02175 0.94426 1.22079 0.97023 0.96943 0.96746 0.94269 1.20572 0.88834 0.98499 0.85385 1.44293 1.26810 1.38027 1.24532 1.19416 0.92338 1.23166 1.05208 0.92897 1.25993 0.95641 1.01868 1.00295 1.70101 0.97547 1.46104 1.43880 0.85245 0.77253 0.78664 0.79123 1.20891 1.21334 1.19774 1.21236 0.91040 0.90872 0.95822 1.22122 0.95698 1.01595 0.93499 1.21045 0.94338 0.97260 0.81110 0.91650 1.21192 0.94829 0.97848 0.99778 1.21243 0.94207 0.98413 1.01368 0.89941 0.91241 0.90996 0.84573 0.85204 0.85292 0.85861 0.86427 0.89604 0.92473 0.87520 0.92422 0.91349 0.92654 0.98122 0.93834 0.93893 0.96896 0.94105 0.90935 0.85849 0.84960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.01 71.23 0.71 -0.85 16 2 C -0.10 -2.04 5.88 -19.87 -0.12 -2.15 16 3 C -0.13 -2.69 9.70 22.27 0.22 -2.47 16 4 C -0.11 -2.47 9.70 22.27 0.22 -2.25 16 5 C -0.08 -1.84 4.37 -19.87 -0.09 -1.93 16 6 C -0.09 -1.65 4.26 29.10 0.12 -1.53 16 7 C 0.51 14.22 7.62 87.66 0.67 14.88 16 8 O -0.57 -21.42 11.59 -3.05 -0.04 -21.46 16 9 N -0.61 -16.48 2.96 -794.42 -2.35 -18.84 16 10 C 0.10 1.74 6.32 86.31 0.55 2.29 16 11 C -0.13 -2.43 6.07 30.69 0.19 -2.25 16 12 C -0.11 -3.16 5.24 30.58 0.16 -3.00 16 13 C -0.11 -4.15 2.21 -10.59 -0.02 -4.17 16 14 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 15 C 0.19 9.65 4.54 86.29 0.39 10.04 16 16 N -0.61 -33.51 2.98 -698.91 -2.09 -35.59 16 17 C -0.27 -16.03 9.54 84.04 0.80 -15.23 16 18 H 0.05 3.14 7.83 -2.91 -0.02 3.12 16 19 C -0.04 -2.44 5.14 84.86 0.44 -2.01 16 20 N -0.93 -56.02 11.01 21.65 0.24 -55.78 16 21 Si 0.97 46.56 29.56 68.60 2.03 48.59 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 25 C 0.14 6.57 6.50 86.42 0.56 7.13 16 26 C -0.09 -3.80 3.79 30.68 0.12 -3.68 16 27 C 0.17 5.93 2.67 45.17 0.12 6.05 16 28 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 29 C -0.12 -2.70 9.70 22.27 0.22 -2.48 16 30 C -0.13 -2.87 9.70 22.27 0.22 -2.66 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 33 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 34 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.13 1.54 8.07 -2.39 -0.02 1.52 16 37 H 0.12 1.60 7.41 -2.39 -0.02 1.58 16 38 H 0.12 1.14 6.00 -2.38 -0.01 1.13 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.06 3.12 6.22 -2.39 -0.01 3.10 16 45 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.04 2.10 7.93 -2.39 -0.02 2.08 16 48 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.04 1.94 7.15 -2.38 -0.02 1.92 16 50 H 0.07 3.03 6.46 -2.39 -0.02 3.02 16 51 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 52 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -75.71 397.59 4.14 -71.57 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.88 Total: 17.78 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: 5.46 Total: -6.27 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -4.20 Total: -110.21 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.04 Total: -21.46 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -75.71 4.14 -71.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021621942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.607 kcal (2) G-P(sol) polarization free energy of solvation -75.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.03 seconds