Wall clock time and date at job start Wed Apr 1 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 119.99781 * 2 1 4 4 C 1.38211 * 119.99949 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99907 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00283 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00110 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47006 * 90.00176 * 7 6 5 9 9 O 1.21278 * 120.00117 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99653 * 179.97438 * 8 7 6 11 11 C 1.46945 * 120.85099 * 359.72571 * 10 8 7 12 12 C 1.53613 * 108.77324 * 125.92963 * 11 10 8 13 13 C 1.53120 * 109.40820 * 54.31016 * 12 11 10 14 14 C 1.52864 * 109.33843 * 299.21678 * 13 12 11 15 15 H 1.09001 * 109.25482 * 302.49332 * 14 13 12 16 16 C 1.52770 * 109.56175 * 182.83792 * 14 13 12 17 17 N 1.46898 * 109.18585 * 293.08070 * 16 14 13 18 18 C 1.36936 * 120.77294 * 126.67289 * 17 16 14 19 19 H 1.08001 * 120.00342 * 207.49878 * 18 17 16 20 20 C 1.38814 * 120.00251 * 27.49575 * 18 17 16 21 21 N 1.31628 * 119.99759 * 17.31216 * 20 18 17 22 22 Si 1.86800 * 120.00431 * 197.31163 * 20 18 17 23 23 H 1.48499 * 109.46835 * 60.00191 * 22 20 18 24 24 H 1.48498 * 109.46998 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46761 * 299.99954 * 22 20 18 26 26 C 1.46972 * 118.45295 * 306.65247 * 17 16 14 27 27 C 1.51470 * 108.79861 * 53.89063 * 26 17 16 28 28 C 1.47310 * 120.84504 * 179.97438 * 10 8 7 29 29 H 1.09009 * 110.07456 * 355.09998 * 28 10 8 30 30 C 1.38216 * 120.00123 * 180.27412 * 2 1 3 31 31 H 1.09001 * 109.47004 * 90.00320 * 1 2 3 32 32 H 1.09008 * 109.46667 * 210.00028 * 1 2 3 33 33 H 1.09002 * 109.47239 * 330.00139 * 1 2 3 34 34 H 1.08000 * 119.99743 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.00200 * 179.97438 * 4 3 2 36 36 H 1.08007 * 120.00072 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.46964 * 210.00290 * 7 6 5 38 38 H 1.09005 * 109.47397 * 330.00178 * 7 6 5 39 39 H 1.09003 * 109.54451 * 245.84268 * 11 10 8 40 40 H 1.09003 * 109.54535 * 6.10858 * 11 10 8 41 41 H 1.09001 * 109.61677 * 294.26012 * 12 11 10 42 42 H 1.08998 * 109.39115 * 174.21917 * 12 11 10 43 43 H 1.08992 * 109.49392 * 179.25843 * 13 12 11 44 44 H 1.09000 * 109.49357 * 59.16990 * 13 12 11 45 45 H 1.09000 * 109.52052 * 52.99589 * 16 14 13 46 46 H 1.09003 * 109.51940 * 173.11305 * 16 14 13 47 47 H 0.96995 * 120.00034 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.61079 * 174.04941 * 26 17 16 49 49 H 1.09000 * 109.61291 * 294.39482 * 26 17 16 50 50 H 1.09008 * 109.65830 * 184.61641 * 27 26 17 51 51 H 1.08997 * 108.37294 * 65.22087 * 27 26 17 52 52 H 1.07995 * 120.00087 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0005 7 6 4.3342 -2.5019 0.0000 8 6 4.5859 -2.9373 1.4206 9 8 4.1926 -2.2548 2.3427 10 7 5.2481 -4.0851 1.6663 11 6 5.7277 -4.9293 0.5633 12 6 7.2318 -5.1795 0.7502 13 6 7.4819 -5.7575 2.1459 14 6 7.0111 -4.7559 3.2004 15 1 7.5338 -3.8103 3.0566 16 6 7.3226 -5.2968 4.5947 17 7 6.4974 -6.4856 4.8469 18 6 7.0702 -7.6654 5.2406 19 1 6.5897 -8.6038 5.0062 20 6 8.2687 -7.6555 5.9411 21 7 8.6825 -6.5489 6.5215 22 14 9.2941 -9.2123 6.0601 23 1 9.6793 -9.6567 4.6966 24 1 10.5180 -8.9392 6.8555 25 1 8.5002 -10.2783 6.7225 26 6 5.0426 -6.3791 4.6671 27 6 4.7602 -5.8471 3.2774 28 6 5.5049 -4.5281 3.0476 29 1 5.1682 -3.7682 3.7529 30 6 2.1981 -1.1970 -0.0057 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1326 0.0004 35 1 4.1204 2.1327 0.0001 36 1 5.3517 0.0001 0.0005 37 1 3.7450 -3.2615 -0.5139 38 1 5.2865 -2.3715 -0.5142 39 1 5.1931 -5.8792 0.5721 40 1 5.5560 -4.4215 -0.3858 41 1 7.7750 -4.2406 0.6430 42 1 7.5773 -5.8873 -0.0033 43 1 8.5472 -5.9479 2.2752 44 1 6.9290 -6.6902 2.2578 45 1 8.3772 -5.5662 4.6536 46 1 7.0998 -4.5330 5.3398 47 1 9.5197 -6.5420 7.0112 48 1 4.5863 -7.3616 4.7875 49 1 4.6319 -5.6918 5.4068 50 1 3.6889 -5.6851 3.1574 51 1 5.0986 -6.5862 2.5512 52 1 1.6582 -2.1322 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021657005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:36 Heat of formation + Delta-G solvation = 2.062240 kcal Electronic energy + Delta-G solvation = -30768.156495 eV Core-core repulsion = 26925.281103 eV Total energy + Delta-G solvation = -3842.875392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -40.49687 -39.43445 -37.91652 -35.52617 -33.65994 -32.63381 -32.56354 -32.00783 -30.30077 -29.55356 -27.94026 -26.94553 -25.56274 -24.70794 -22.69006 -22.19351 -21.96635 -21.45282 -20.80691 -18.93936 -17.82777 -17.06894 -16.74761 -16.52219 -15.83976 -15.58557 -15.08043 -14.85894 -14.79709 -14.31953 -14.05632 -13.82273 -13.56465 -13.47701 -13.31953 -13.13307 -13.03250 -12.76266 -12.64466 -12.43156 -12.29022 -12.22033 -11.97459 -11.93415 -11.57151 -11.23622 -11.09610 -11.04867 -10.91941 -10.72440 -10.64198 -10.44849 -10.09964 -10.07329 -9.94595 -9.69113 -9.57176 -9.40299 -8.84734 -8.65420 -8.48949 -8.22165 -6.67582 -5.78972 -3.20708 1.24833 1.32389 2.81086 3.16719 3.37452 3.43686 3.44057 3.70796 4.48858 4.50450 4.64691 4.71307 4.77561 4.96441 5.00134 5.09229 5.15271 5.17590 5.23194 5.33978 5.38247 5.38720 5.41147 5.46785 5.49102 5.53761 5.56434 5.64780 5.69613 5.79076 5.90845 5.96331 6.02014 6.08027 6.11067 6.23691 6.36555 6.37042 6.43796 6.46383 6.49997 6.52011 6.56411 6.69791 6.79329 6.91562 6.94614 6.97990 7.05396 7.32772 7.61403 7.70575 7.79004 8.39096 8.44250 9.20664 9.84086 10.41750 11.29686 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.002467 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.915097 B =11345.860239 C =11564.245287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.057 4.057 7 C -0.103 4.103 8 C 0.513 3.487 9 O -0.536 6.536 10 N -0.607 5.607 11 C 0.107 3.893 12 C -0.135 4.135 13 C -0.104 4.104 14 C -0.115 4.115 15 H 0.056 0.944 16 C 0.177 3.823 17 N -0.588 5.588 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.900 3.100 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.147 3.853 27 C -0.139 4.139 28 C 0.156 3.844 29 H 0.093 0.907 30 C -0.106 4.106 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.018 0.982 47 H 0.254 0.746 48 H 0.057 0.943 49 H 0.017 0.983 50 H 0.050 0.950 51 H 0.064 0.936 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.105 10.367 -18.281 23.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.058 4.058 7 C -0.143 4.143 8 C 0.301 3.699 9 O -0.413 6.413 10 N -0.340 5.340 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.141 4.141 14 C -0.136 4.136 15 H 0.074 0.926 16 C 0.051 3.949 17 N -0.311 5.311 18 C -0.379 4.379 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.730 3.270 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.020 3.980 27 C -0.179 4.179 28 C 0.054 3.946 29 H 0.111 0.889 30 C -0.124 4.124 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.075 0.925 49 H 0.035 0.965 50 H 0.068 0.932 51 H 0.083 0.917 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.165 10.743 -17.667 23.040 hybrid contribution 0.738 -0.803 0.089 1.094 sum -9.427 9.939 -17.578 22.286 Atomic orbital electron populations 1.20780 0.91310 1.02835 1.02067 1.19855 0.95965 0.93121 0.99824 1.20984 0.94279 0.97346 1.01601 1.21060 0.94293 0.97824 1.00183 1.20956 0.99684 0.92013 1.00225 1.19295 0.93510 0.93721 0.99236 1.20732 1.01857 0.95974 0.95689 1.20401 0.77996 0.80671 0.90857 1.90713 1.50973 1.53460 1.46181 1.48547 1.55561 1.21781 1.08080 1.21803 0.95466 0.95243 0.89099 1.22054 0.94902 1.01179 0.99180 1.21450 1.01534 0.99386 0.91757 1.22017 0.93705 0.98095 0.99804 0.92578 1.20708 0.98077 0.87753 0.88373 1.44030 0.99458 1.09338 1.78266 1.19100 1.04914 0.84882 1.29048 0.91745 1.25023 1.00555 0.96850 0.97135 1.70023 1.22615 1.26742 1.35290 0.86401 0.79895 0.83090 0.77573 1.21078 1.21699 1.20932 1.20551 0.86911 0.98301 0.92278 1.22087 0.98229 0.96549 1.01003 1.21312 0.95840 0.96207 0.81207 0.88867 1.20835 0.93366 0.97571 1.00593 0.91342 0.91533 0.91619 0.86353 0.86161 0.86346 0.88269 0.88182 0.91270 0.90581 0.92169 0.91382 0.92109 0.90488 0.88990 0.96360 0.93572 0.92495 0.96501 0.93161 0.91747 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.55 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 5 C -0.11 -1.29 9.70 -39.59 -0.38 -1.67 16 6 C -0.06 -0.69 4.37 -104.63 -0.46 -1.14 16 7 C -0.10 -1.10 4.18 -29.03 -0.12 -1.23 16 8 C 0.51 7.73 7.70 -10.99 -0.08 7.65 16 9 O -0.54 -10.38 15.49 5.56 0.09 -10.29 16 10 N -0.61 -8.91 2.66 -164.59 -0.44 -9.35 16 11 C 0.11 1.23 5.88 -3.48 -0.02 1.21 16 12 C -0.13 -1.68 6.10 -26.35 -0.16 -1.84 16 13 C -0.10 -1.73 4.82 -26.74 -0.13 -1.86 16 14 C -0.12 -2.16 2.50 -90.76 -0.23 -2.39 16 15 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 16 C 0.18 4.15 4.68 -3.94 -0.02 4.13 16 17 N -0.59 -14.24 2.57 -173.59 -0.45 -14.69 16 18 C -0.25 -6.63 9.60 -15.06 -0.14 -6.78 16 19 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 20 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -25.85 11.18 55.49 0.62 -25.23 16 22 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.15 3.06 6.47 -4.56 -0.03 3.03 16 27 C -0.14 -2.44 4.90 -27.40 -0.13 -2.57 16 28 C 0.16 2.78 2.69 -67.33 -0.18 2.60 16 29 H 0.09 1.91 7.06 -51.92 -0.37 1.54 16 30 C -0.11 -1.22 9.36 -39.58 -0.37 -1.60 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.52 8.09 -51.92 -0.42 0.10 16 33 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.10 0.85 7.87 -51.93 -0.41 0.44 16 38 H 0.10 0.88 7.67 -51.93 -0.40 0.48 16 39 H 0.07 0.78 7.23 -51.93 -0.38 0.41 16 40 H 0.08 0.64 5.96 -51.93 -0.31 0.33 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.41 6.09 -51.93 -0.32 1.10 16 45 H 0.09 2.40 6.03 -51.93 -0.31 2.08 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 51 H 0.06 1.10 5.31 -51.93 -0.28 0.83 16 52 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 397.20 15.07 5.99 5.99 Total: -1.00 -31.59 397.20 -11.44 -43.04 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.64 Total: 2.11 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.58 Total: -7.85 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.26 Total: -49.27 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.59 -11.44 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021657005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.100 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.86 seconds