Wall clock time and date at job start Wed Apr 1 2020 01:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38259 * 119.99781 * 2 1 4 4 C 1.38211 * 119.99949 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99907 * 0.02562 * 4 3 2 6 6 C 1.38210 * 120.00283 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00110 * 179.97438 * 6 5 4 8 8 C 1.50704 * 109.47006 * 90.00176 * 7 6 5 9 9 O 1.21278 * 120.00117 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99653 * 179.97438 * 8 7 6 11 11 C 1.46945 * 120.85099 * 359.72571 * 10 8 7 12 12 C 1.53613 * 108.77324 * 125.92963 * 11 10 8 13 13 C 1.53120 * 109.40820 * 54.31016 * 12 11 10 14 14 C 1.52864 * 109.33843 * 299.21678 * 13 12 11 15 15 H 1.09001 * 109.25482 * 302.49332 * 14 13 12 16 16 C 1.52770 * 109.56175 * 182.83792 * 14 13 12 17 17 N 1.46898 * 109.18585 * 293.08070 * 16 14 13 18 18 C 1.36936 * 120.77294 * 126.67289 * 17 16 14 19 19 H 1.08001 * 120.00342 * 207.49878 * 18 17 16 20 20 C 1.38814 * 120.00251 * 27.49575 * 18 17 16 21 21 N 1.31628 * 119.99759 * 17.31216 * 20 18 17 22 22 Si 1.86800 * 120.00431 * 197.31163 * 20 18 17 23 23 H 1.48499 * 109.46835 * 60.00191 * 22 20 18 24 24 H 1.48498 * 109.46998 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46761 * 299.99954 * 22 20 18 26 26 C 1.46972 * 118.45295 * 306.65247 * 17 16 14 27 27 C 1.51470 * 108.79861 * 53.89063 * 26 17 16 28 28 C 1.47310 * 120.84504 * 179.97438 * 10 8 7 29 29 H 1.09009 * 110.07456 * 355.09998 * 28 10 8 30 30 C 1.38216 * 120.00123 * 180.27412 * 2 1 3 31 31 H 1.09001 * 109.47004 * 90.00320 * 1 2 3 32 32 H 1.09008 * 109.46667 * 210.00028 * 1 2 3 33 33 H 1.09002 * 109.47239 * 330.00139 * 1 2 3 34 34 H 1.08000 * 119.99743 * 0.02562 * 3 2 1 35 35 H 1.07997 * 120.00200 * 179.97438 * 4 3 2 36 36 H 1.08007 * 120.00072 * 179.97438 * 5 4 3 37 37 H 1.09004 * 109.46964 * 210.00290 * 7 6 5 38 38 H 1.09005 * 109.47397 * 330.00178 * 7 6 5 39 39 H 1.09003 * 109.54451 * 245.84268 * 11 10 8 40 40 H 1.09003 * 109.54535 * 6.10858 * 11 10 8 41 41 H 1.09001 * 109.61677 * 294.26012 * 12 11 10 42 42 H 1.08998 * 109.39115 * 174.21917 * 12 11 10 43 43 H 1.08992 * 109.49392 * 179.25843 * 13 12 11 44 44 H 1.09000 * 109.49357 * 59.16990 * 13 12 11 45 45 H 1.09000 * 109.52052 * 52.99589 * 16 14 13 46 46 H 1.09003 * 109.51940 * 173.11305 * 16 14 13 47 47 H 0.96995 * 120.00034 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.61079 * 174.04941 * 26 17 16 49 49 H 1.09000 * 109.61291 * 294.39482 * 26 17 16 50 50 H 1.09008 * 109.65830 * 184.61641 * 27 26 17 51 51 H 1.08997 * 108.37294 * 65.22087 * 27 26 17 52 52 H 1.07995 * 120.00087 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1969 0.0005 7 6 4.3342 -2.5019 0.0000 8 6 4.5859 -2.9373 1.4206 9 8 4.1926 -2.2548 2.3427 10 7 5.2481 -4.0851 1.6663 11 6 5.7277 -4.9293 0.5633 12 6 7.2318 -5.1795 0.7502 13 6 7.4819 -5.7575 2.1459 14 6 7.0111 -4.7559 3.2004 15 1 7.5338 -3.8103 3.0566 16 6 7.3226 -5.2968 4.5947 17 7 6.4974 -6.4856 4.8469 18 6 7.0702 -7.6654 5.2406 19 1 6.5897 -8.6038 5.0062 20 6 8.2687 -7.6555 5.9411 21 7 8.6825 -6.5489 6.5215 22 14 9.2941 -9.2123 6.0601 23 1 9.6793 -9.6567 4.6966 24 1 10.5180 -8.9392 6.8555 25 1 8.5002 -10.2783 6.7225 26 6 5.0426 -6.3791 4.6671 27 6 4.7602 -5.8471 3.2774 28 6 5.5049 -4.5281 3.0476 29 1 5.1682 -3.7682 3.7529 30 6 2.1981 -1.1970 -0.0057 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8901 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6582 2.1326 0.0004 35 1 4.1204 2.1327 0.0001 36 1 5.3517 0.0001 0.0005 37 1 3.7450 -3.2615 -0.5139 38 1 5.2865 -2.3715 -0.5142 39 1 5.1931 -5.8792 0.5721 40 1 5.5560 -4.4215 -0.3858 41 1 7.7750 -4.2406 0.6430 42 1 7.5773 -5.8873 -0.0033 43 1 8.5472 -5.9479 2.2752 44 1 6.9290 -6.6902 2.2578 45 1 8.3772 -5.5662 4.6536 46 1 7.0998 -4.5330 5.3398 47 1 9.5197 -6.5420 7.0112 48 1 4.5863 -7.3616 4.7875 49 1 4.6319 -5.6918 5.4068 50 1 3.6889 -5.6851 3.1574 51 1 5.0986 -6.5862 2.5512 52 1 1.6582 -2.1322 -0.0106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021657005.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:34 Heat of formation + Delta-G solvation = -13.538912 kcal Electronic energy + Delta-G solvation = -30768.833012 eV Core-core repulsion = 26925.281103 eV Total energy + Delta-G solvation = -3843.551909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.71661 -40.38499 -39.23076 -37.05951 -34.66622 -34.15824 -33.92990 -32.88379 -31.85343 -31.17825 -28.91834 -27.68557 -27.21773 -26.13781 -24.17852 -23.49799 -23.05029 -22.80121 -21.84044 -20.18886 -19.37442 -18.51555 -18.07547 -17.40626 -16.96410 -16.79903 -16.72616 -16.07634 -15.81036 -15.67506 -15.39406 -15.13520 -15.01661 -14.65346 -14.40971 -14.28100 -14.09832 -13.98275 -13.84313 -13.66170 -13.56067 -13.27496 -13.15130 -12.90733 -12.74959 -12.73741 -12.59003 -12.49871 -12.23409 -11.96684 -11.92545 -11.84183 -11.80986 -11.76752 -11.42073 -11.30666 -11.06437 -10.75507 -10.51489 -9.66145 -9.51169 -9.45071 -8.69628 -7.86354 -5.31571 0.43766 0.52649 1.48056 1.49839 1.56754 1.68368 2.04004 2.51984 2.87987 3.29275 3.59848 3.65099 3.71386 3.90751 3.95432 3.96998 4.03771 4.07827 4.13239 4.24938 4.26091 4.38692 4.39349 4.48192 4.51840 4.60117 4.62147 4.64134 4.69661 4.74923 4.82984 4.84634 4.89125 4.96915 4.99222 5.00378 5.05048 5.12962 5.16490 5.21338 5.24257 5.32009 5.32370 5.46274 5.58163 5.60192 5.63944 5.68111 5.68238 5.71437 5.72655 6.16668 6.38505 6.55426 7.14105 7.24582 7.84292 8.38661 9.20658 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.024092 B = 0.002467 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.915097 B =11345.860239 C =11564.245287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.126 4.126 5 C -0.130 4.130 6 C -0.075 4.075 7 C -0.092 4.092 8 C 0.510 3.490 9 O -0.588 6.588 10 N -0.604 5.604 11 C 0.103 3.897 12 C -0.126 4.126 13 C -0.098 4.098 14 C -0.104 4.104 15 H 0.052 0.948 16 C 0.187 3.813 17 N -0.600 5.600 18 C -0.255 4.255 19 H 0.071 0.929 20 C -0.051 4.051 21 N -0.939 5.939 22 Si 0.966 3.034 23 H -0.274 1.274 24 H -0.299 1.299 25 H -0.276 1.276 26 C 0.143 3.857 27 C -0.122 4.122 28 C 0.164 3.836 29 H 0.058 0.942 30 C -0.123 4.123 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.061 0.939 46 H -0.021 1.021 47 H 0.249 0.751 48 H 0.064 0.936 49 H 0.000 1.000 50 H 0.066 0.934 51 H 0.078 0.922 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.106 9.680 -21.917 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.075 4.075 7 C -0.131 4.131 8 C 0.300 3.700 9 O -0.468 6.468 10 N -0.336 5.336 11 C -0.019 4.019 12 C -0.164 4.164 13 C -0.135 4.135 14 C -0.125 4.125 15 H 0.070 0.930 16 C 0.061 3.939 17 N -0.324 5.324 18 C -0.385 4.385 19 H 0.089 0.911 20 C -0.246 4.246 21 N -0.585 5.585 22 Si 0.794 3.206 23 H -0.200 1.200 24 H -0.225 1.225 25 H -0.202 1.202 26 C 0.017 3.983 27 C -0.161 4.161 28 C 0.060 3.940 29 H 0.076 0.924 30 C -0.141 4.141 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.098 0.902 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.080 0.920 46 H -0.003 1.003 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.018 0.982 50 H 0.085 0.915 51 H 0.096 0.904 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.188 10.036 -21.356 26.115 hybrid contribution 0.992 -0.522 1.298 1.715 sum -10.196 9.513 -20.058 24.430 Atomic orbital electron populations 1.20816 0.89623 1.03209 1.03163 1.20242 0.97439 0.93095 0.99208 1.21313 0.94454 0.98236 1.01154 1.21377 0.94803 0.98439 0.99768 1.21209 1.00283 0.92526 1.00809 1.19527 0.93934 0.94384 0.99682 1.20766 1.03637 0.96124 0.92542 1.21215 0.76735 0.79784 0.92281 1.90698 1.52989 1.54925 1.48216 1.48525 1.55517 1.22309 1.07260 1.22139 0.94450 0.95785 0.89492 1.22005 0.96009 1.01866 0.96509 1.21351 1.00075 0.98172 0.93938 1.21777 0.94882 0.98304 0.97528 0.92985 1.20443 0.96298 0.86729 0.90443 1.44231 1.00915 1.08870 1.78354 1.19455 1.05013 0.85845 1.28145 0.91115 1.25797 1.01832 0.99696 0.97298 1.70205 1.22763 1.28934 1.36628 0.85356 0.77866 0.79612 0.77721 1.19963 1.22505 1.20199 1.20684 0.84972 0.98560 0.94117 1.21871 0.99143 0.96386 0.98738 1.20871 0.94599 0.95408 0.83107 0.92395 1.21090 0.93624 0.98355 1.01044 0.89802 0.91597 0.90817 0.84381 0.84435 0.85703 0.85205 0.85459 0.90162 0.86189 0.91689 0.88315 0.93776 0.91816 0.92030 1.00308 0.94227 0.91741 0.98213 0.91525 0.90351 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 2 C -0.10 -1.99 5.88 -19.86 -0.12 -2.11 16 3 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 4 C -0.13 -2.53 10.05 22.27 0.22 -2.30 16 5 C -0.13 -2.87 9.70 22.27 0.22 -2.65 16 6 C -0.07 -1.66 4.37 -19.87 -0.09 -1.75 16 7 C -0.09 -1.65 4.18 29.10 0.12 -1.53 16 8 C 0.51 14.44 7.70 87.66 0.68 15.12 16 9 O -0.59 -22.87 15.49 -3.02 -0.05 -22.92 16 10 N -0.60 -16.42 2.66 -793.03 -2.11 -18.53 16 11 C 0.10 1.89 5.88 86.50 0.51 2.40 16 12 C -0.13 -2.67 6.10 30.84 0.19 -2.48 16 13 C -0.10 -3.17 4.82 30.59 0.15 -3.02 16 14 C -0.10 -4.00 2.50 -10.88 -0.03 -4.02 16 15 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 16 C 0.19 9.31 4.68 86.23 0.40 9.71 16 17 N -0.60 -30.05 2.57 -703.13 -1.81 -31.86 16 18 C -0.25 -13.74 9.60 84.03 0.81 -12.93 16 19 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 20 C -0.05 -2.84 4.92 84.86 0.42 -2.43 16 21 N -0.94 -56.23 11.18 21.65 0.24 -55.99 16 22 Si 0.97 44.44 29.59 68.60 2.03 46.47 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 25 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 26 C 0.14 6.06 6.47 85.79 0.55 6.62 16 27 C -0.12 -4.17 4.90 30.16 0.15 -4.02 16 28 C 0.16 5.85 2.69 44.94 0.12 5.97 16 29 H 0.06 2.49 7.06 -2.38 -0.02 2.48 16 30 C -0.12 -2.66 9.36 22.27 0.21 -2.46 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 33 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.12 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.13 1.57 7.87 -2.38 -0.02 1.55 16 38 H 0.13 1.62 7.67 -2.38 -0.02 1.61 16 39 H 0.08 1.39 7.23 -2.39 -0.02 1.37 16 40 H 0.12 1.26 5.96 -2.39 -0.01 1.24 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 2.24 6.09 -2.39 -0.01 2.23 16 45 H 0.06 3.42 6.03 -2.39 -0.01 3.40 16 46 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 47 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.06 2.60 7.94 -2.39 -0.02 2.58 16 49 H 0.00 -0.01 8.14 -2.39 -0.02 -0.02 16 50 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 51 H 0.08 2.50 5.31 -2.39 -0.01 2.49 16 52 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -73.64 397.20 4.64 -69.00 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.89 Total: 18.93 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.44 Total: -5.11 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -3.67 Total: -106.38 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.05 Total: -22.92 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -73.64 4.64 -69.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021657005.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.458 kcal (2) G-P(sol) polarization free energy of solvation -73.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds