Wall clock time and date at job start Wed Apr 1 2020 01:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 120.00108 * 2 1 4 4 C 1.38214 * 120.00368 * 179.80756 * 3 2 1 5 5 C 1.38254 * 119.99731 * 0.42115 * 4 3 2 6 6 C 1.38223 * 120.00130 * 359.80723 * 5 4 3 7 7 C 1.50700 * 119.99821 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47301 * 270.02414 * 7 6 5 9 9 O 1.21280 * 120.00277 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99683 * 180.02562 * 8 7 6 11 11 C 1.47061 * 120.84507 * 354.86008 * 10 8 7 12 12 C 1.53126 * 109.03802 * 126.53951 * 11 10 8 13 13 C 1.53153 * 109.61620 * 54.01453 * 12 11 10 14 14 C 1.52822 * 109.26965 * 299.14843 * 13 12 11 15 15 H 1.09004 * 109.47172 * 301.97111 * 14 13 12 16 16 C 1.53062 * 110.33668 * 181.42897 * 14 13 12 17 17 N 1.47074 * 108.32955 * 184.55468 * 16 14 13 18 18 C 1.36942 * 120.46383 * 233.33005 * 17 16 14 19 19 H 1.07994 * 120.00190 * 27.44378 * 18 17 16 20 20 C 1.38816 * 119.99345 * 207.43947 * 18 17 16 21 21 N 1.31618 * 120.00343 * 16.99772 * 20 18 17 22 22 Si 1.86801 * 119.99478 * 196.99357 * 20 18 17 23 23 H 1.48507 * 109.47051 * 84.87247 * 22 20 18 24 24 H 1.48499 * 109.47207 * 204.86902 * 22 20 18 25 25 H 1.48496 * 109.47201 * 324.87385 * 22 20 18 26 26 C 1.46859 * 119.06621 * 53.31119 * 17 16 14 27 27 C 1.53318 * 109.10433 * 307.36027 * 26 17 16 28 28 C 1.46713 * 120.84101 * 174.57904 * 10 8 7 29 29 H 1.09003 * 109.52716 * 114.80832 * 28 10 8 30 30 C 1.38215 * 120.00306 * 180.27007 * 2 1 3 31 31 H 1.08992 * 109.46990 * 269.72354 * 1 2 3 32 32 H 1.08994 * 109.47202 * 29.73005 * 1 2 3 33 33 H 1.09000 * 109.46479 * 149.73178 * 1 2 3 34 34 H 1.08005 * 119.99755 * 359.97438 * 3 2 1 35 35 H 1.07997 * 120.00334 * 180.20499 * 4 3 2 36 36 H 1.07996 * 120.00113 * 179.79175 * 5 4 3 37 37 H 1.08994 * 109.46852 * 30.03043 * 7 6 5 38 38 H 1.09007 * 109.46650 * 150.02834 * 7 6 5 39 39 H 1.09003 * 109.54294 * 246.40935 * 11 10 8 40 40 H 1.09004 * 109.54445 * 6.58663 * 11 10 8 41 41 H 1.08998 * 109.44815 * 174.05365 * 12 11 10 42 42 H 1.08997 * 109.45044 * 293.96828 * 12 11 10 43 43 H 1.09004 * 109.50028 * 59.08331 * 13 12 11 44 44 H 1.08999 * 109.50662 * 179.20523 * 13 12 11 45 45 H 1.08999 * 109.69692 * 304.26548 * 16 14 13 46 46 H 1.09001 * 109.69569 * 64.84745 * 16 14 13 47 47 H 0.97000 * 119.99695 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.53124 * 67.24967 * 26 17 16 49 49 H 1.08997 * 109.53218 * 187.47346 * 26 17 16 50 50 H 1.08999 * 109.55583 * 173.93654 * 27 26 17 51 51 H 1.08991 * 109.56063 * 294.15546 * 27 26 17 52 52 H 1.07998 * 119.99856 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1974 0.0040 5 6 4.2717 0.0001 -0.0008 6 6 3.5807 -1.1970 -0.0055 7 6 4.3343 -2.5020 -0.0113 8 6 4.5854 -2.9307 -1.4340 9 8 4.1918 -2.2440 -2.3528 10 7 5.2476 -4.0775 -1.6853 11 6 5.8307 -4.8670 -0.5901 12 6 5.3240 -6.3086 -0.6889 13 6 5.6101 -6.8593 -2.0890 14 6 4.8778 -6.0078 -3.1253 15 1 3.8091 -6.0136 -2.9107 16 6 5.1186 -6.5588 -4.5328 17 7 4.4884 -5.6479 -5.5003 18 6 3.6035 -6.1261 -6.4296 19 1 3.0266 -7.0144 -6.2189 20 6 3.4480 -5.4688 -7.6423 21 7 4.3580 -4.6077 -8.0457 22 14 1.9471 -5.8066 -8.7019 23 1 0.8207 -4.9496 -8.2522 24 1 2.2642 -5.5031 -10.1205 25 1 1.5631 -7.2354 -8.5752 26 6 4.8211 -4.2182 -5.4554 27 6 4.6079 -3.6979 -4.0291 28 6 5.3998 -4.5729 -3.0578 29 1 6.4536 -4.5580 -3.3359 30 6 2.1982 -1.1969 -0.0056 31 1 -0.3633 -0.0050 1.0276 32 1 -0.3633 0.8923 -0.5096 33 1 -0.3632 -0.8876 -0.5180 34 1 1.6583 2.1327 -0.0004 35 1 4.1204 2.1327 0.0074 36 1 5.3517 0.0001 -0.0010 37 1 5.2866 -2.3738 0.5031 38 1 3.7451 -3.2639 0.4991 39 1 6.9177 -4.8561 -0.6713 40 1 5.5323 -4.4390 0.3670 41 1 5.8323 -6.9236 0.0538 42 1 4.2502 -6.3294 -0.5031 43 1 6.6825 -6.8246 -2.2816 44 1 5.2615 -7.8901 -2.1529 45 1 6.1897 -6.6165 -4.7265 46 1 4.6752 -7.5508 -4.6198 47 1 4.2495 -4.1488 -8.8933 48 1 5.8630 -4.0773 -5.7428 49 1 4.1753 -3.6720 -6.1429 50 1 4.9541 -2.6665 -3.9614 51 1 3.5483 -3.7443 -3.7783 52 1 1.6582 -2.1322 -0.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021657006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:43 Heat of formation + Delta-G solvation = 14.956924 kcal Electronic energy + Delta-G solvation = -31003.227183 eV Core-core repulsion = 27160.910946 eV Total energy + Delta-G solvation = -3842.316237 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.56512 -39.34089 -37.60980 -35.80991 -33.66010 -32.95329 -32.45069 -31.94848 -30.09868 -29.41641 -27.86703 -26.87420 -25.50619 -24.60390 -22.54802 -22.50754 -22.05753 -21.00428 -20.19583 -19.35215 -18.70383 -16.74335 -16.56623 -16.37516 -15.82206 -15.73797 -14.96862 -14.69771 -14.64920 -14.35700 -14.13954 -13.85198 -13.59699 -13.51597 -13.36861 -13.04410 -12.98514 -12.79098 -12.60471 -12.34566 -12.26595 -12.06083 -11.90319 -11.83673 -11.27312 -11.17862 -11.08198 -11.01995 -10.90394 -10.88767 -10.77387 -10.49440 -10.27787 -10.16947 -9.87262 -9.84602 -9.35789 -8.85625 -8.66530 -8.46557 -8.36216 -8.20287 -6.58837 -5.70386 -3.12988 1.31598 1.39580 2.87348 3.19288 3.43516 3.49854 3.50323 3.76513 4.54256 4.56746 4.69917 4.71740 4.82726 4.87135 4.95418 5.06406 5.08435 5.16867 5.23567 5.31422 5.37499 5.42153 5.44455 5.47931 5.49206 5.53818 5.62858 5.69332 5.73433 5.74521 5.89225 5.96116 6.02582 6.07025 6.09590 6.15131 6.27047 6.41764 6.43159 6.44046 6.53156 6.57881 6.58967 6.74138 6.81580 6.98213 7.00587 7.03531 7.25901 7.56918 7.71461 7.79908 7.88834 8.51754 8.53297 9.29366 9.92910 10.48371 11.37416 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.003475 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.089019 B = 8055.479805 C = 9830.387197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.057 4.057 7 C -0.105 4.105 8 C 0.512 3.488 9 O -0.513 6.513 10 N -0.611 5.611 11 C 0.107 3.893 12 C -0.133 4.133 13 C -0.113 4.113 14 C -0.114 4.114 15 H 0.069 0.931 16 C 0.156 3.844 17 N -0.593 5.593 18 C -0.253 4.253 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.167 3.833 27 C -0.128 4.128 28 C 0.160 3.840 29 H 0.062 0.938 30 C -0.104 4.104 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.018 0.982 46 H 0.055 0.945 47 H 0.253 0.747 48 H 0.014 0.986 49 H 0.088 0.912 50 H 0.082 0.918 51 H 0.057 0.943 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.927 5.123 22.617 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.057 4.057 7 C -0.145 4.145 8 C 0.299 3.701 9 O -0.388 6.388 10 N -0.345 5.345 11 C -0.016 4.016 12 C -0.171 4.171 13 C -0.152 4.152 14 C -0.135 4.135 15 H 0.087 0.913 16 C 0.029 3.971 17 N -0.316 5.316 18 C -0.383 4.383 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.040 3.960 27 C -0.167 4.167 28 C 0.058 3.942 29 H 0.080 0.920 30 C -0.122 4.122 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.032 0.968 49 H 0.106 0.894 50 H 0.100 0.900 51 H 0.075 0.925 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.717 5.589 21.926 22.639 hybrid contribution -0.623 -0.295 -0.544 0.878 sum 0.094 5.294 21.383 22.029 Atomic orbital electron populations 1.20783 0.91313 1.02957 1.02004 1.19857 0.95988 0.93114 0.99683 1.20984 0.94285 0.97344 1.01545 1.21046 0.94290 0.97794 1.00304 1.20925 0.99558 0.92009 1.00422 1.19270 0.93480 0.93661 0.99334 1.20785 1.01626 0.96040 0.96016 1.20396 0.78109 0.80856 0.90703 1.90800 1.50095 1.53087 1.44865 1.48320 1.55236 1.22746 1.08226 1.21706 0.98073 0.91891 0.89954 1.21900 1.01655 0.95408 0.98147 1.21518 1.00559 0.99353 0.93739 1.22000 0.99996 0.94229 0.97249 0.91299 1.20855 0.95556 0.93684 0.87014 1.44141 1.49857 1.02301 1.35274 1.19176 1.13884 1.11353 0.93872 0.91818 1.25014 0.98011 1.00220 0.96307 1.70036 1.32538 1.30784 1.21240 0.86330 0.83124 0.77933 0.79496 1.21422 1.21762 1.20563 1.20991 0.98424 0.84335 0.92202 1.22678 0.99488 0.98636 0.95890 1.21185 0.99421 0.94088 0.79511 0.92048 1.20845 0.93412 0.97605 1.00363 0.91387 0.91598 0.91448 0.86378 0.86220 0.86433 0.88481 0.88419 0.91551 0.90319 0.91173 0.91721 0.92027 0.91781 0.96461 0.92671 0.93672 0.96809 0.89359 0.90021 0.92465 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 16 2 C -0.09 -1.02 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.38 9.70 -39.58 -0.38 -1.77 16 4 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 5 C -0.11 -1.33 9.70 -39.58 -0.38 -1.72 16 6 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 7 C -0.10 -1.15 4.19 -29.04 -0.12 -1.27 16 8 C 0.51 7.86 7.58 -10.99 -0.08 7.78 16 9 O -0.51 -10.13 11.70 5.56 0.07 -10.06 16 10 N -0.61 -8.88 2.98 -165.61 -0.49 -9.38 16 11 C 0.11 1.09 6.35 -3.67 -0.02 1.07 16 12 C -0.13 -1.35 6.07 -26.59 -0.16 -1.51 16 13 C -0.11 -1.46 5.24 -26.74 -0.14 -1.60 16 14 C -0.11 -1.97 2.20 -90.76 -0.20 -2.17 16 15 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 16 C 0.16 3.29 5.86 -3.70 -0.02 3.27 16 17 N -0.59 -15.40 3.00 -172.26 -0.52 -15.92 16 18 C -0.25 -7.18 9.58 -15.06 -0.14 -7.32 16 19 H 0.06 1.77 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 21 N -0.90 -27.10 11.15 55.49 0.62 -26.49 16 22 Si 0.90 22.44 29.59 -169.99 -5.03 17.41 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 C 0.17 4.26 5.27 -3.68 -0.02 4.24 16 27 C -0.13 -2.80 3.83 -26.65 -0.10 -2.90 16 28 C 0.16 2.87 2.60 -67.98 -0.18 2.69 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 C -0.10 -1.32 9.36 -39.58 -0.37 -1.69 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 33 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 34 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.10 0.82 7.69 -51.93 -0.40 0.42 16 38 H 0.10 0.89 7.85 -51.93 -0.41 0.48 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.59 5.96 -51.93 -0.31 0.28 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 47 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 2.56 6.03 -51.93 -0.31 2.25 16 50 H 0.08 1.85 6.11 -51.93 -0.32 1.54 16 51 H 0.06 1.37 7.46 -51.93 -0.39 0.99 16 52 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 397.55 15.07 5.99 5.99 Total: -1.00 -33.47 397.55 -11.75 -45.21 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.85 Total: 1.33 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -3.53 Total: -8.11 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.39 Total: -51.78 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.47 -11.75 -45.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021657006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.172 kcal (2) G-P(sol) polarization free energy of solvation -33.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds