Wall clock time and date at job start Wed Apr 1 2020 01:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38253 * 119.99955 * 2 1 4 4 C 1.38218 * 120.00004 * 180.02562 * 3 2 1 5 5 C 1.38255 * 119.99967 * 359.95570 * 4 3 2 6 6 C 1.38207 * 120.00076 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00093 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47643 * 89.99499 * 7 6 5 9 9 O 1.21287 * 119.99659 * 0.02562 * 8 7 6 10 10 N 1.34769 * 120.00551 * 180.02562 * 8 7 6 11 11 C 1.47078 * 120.84346 * 354.93631 * 10 8 7 12 12 C 1.53126 * 109.04082 * 233.16013 * 11 10 8 13 13 C 1.53144 * 109.61995 * 305.99942 * 12 11 10 14 14 C 1.52813 * 109.26846 * 60.84914 * 13 12 11 15 15 H 1.08995 * 109.47456 * 58.00745 * 14 13 12 16 16 C 1.53068 * 110.34025 * 178.54862 * 14 13 12 17 17 N 1.47062 * 108.33697 * 175.42589 * 16 14 13 18 18 C 1.36939 * 120.46257 * 126.67105 * 17 16 14 19 19 H 1.08001 * 120.00215 * 322.00438 * 18 17 16 20 20 C 1.38810 * 119.99781 * 142.01473 * 18 17 16 21 21 N 1.31621 * 119.99939 * 173.45249 * 20 18 17 22 22 Si 1.86799 * 120.00172 * 353.44826 * 20 18 17 23 23 H 1.48500 * 109.46941 * 89.06061 * 22 20 18 24 24 H 1.48499 * 109.47148 * 209.05917 * 22 20 18 25 25 H 1.48495 * 109.47271 * 329.05794 * 22 20 18 26 26 C 1.46865 * 119.06480 * 306.68935 * 17 16 14 27 27 C 1.53313 * 109.09740 * 52.64989 * 26 17 16 28 28 C 1.46716 * 120.84930 * 174.65666 * 10 8 7 29 29 H 1.09004 * 109.52791 * 245.46848 * 28 10 8 30 30 C 1.38214 * 120.00348 * 180.16852 * 2 1 3 31 31 H 1.09003 * 109.47169 * 90.00498 * 1 2 3 32 32 H 1.09004 * 109.47155 * 209.99516 * 1 2 3 33 33 H 1.08996 * 109.47147 * 329.99459 * 1 2 3 34 34 H 1.08000 * 120.00056 * 0.02562 * 3 2 1 35 35 H 1.08000 * 119.99966 * 179.97438 * 4 3 2 36 36 H 1.07998 * 119.99986 * 179.97438 * 5 4 3 37 37 H 1.09003 * 109.46849 * 329.99506 * 7 6 5 38 38 H 1.09002 * 109.46980 * 209.99788 * 7 6 5 39 39 H 1.09002 * 109.53976 * 353.02589 * 11 10 8 40 40 H 1.08995 * 109.53834 * 113.28929 * 11 10 8 41 41 H 1.08995 * 109.44842 * 66.04931 * 12 11 10 42 42 H 1.09005 * 109.44551 * 185.98847 * 12 11 10 43 43 H 1.08999 * 109.50294 * 180.79067 * 13 12 11 44 44 H 1.09001 * 109.50858 * 300.86548 * 13 12 11 45 45 H 1.09002 * 109.69026 * 295.14609 * 16 14 13 46 46 H 1.09005 * 109.68833 * 55.71700 * 16 14 13 47 47 H 0.97003 * 120.00266 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.53338 * 292.76084 * 26 17 16 49 49 H 1.09000 * 109.59476 * 172.57666 * 26 17 16 50 50 H 1.09010 * 109.55665 * 186.05388 * 27 26 17 51 51 H 1.08994 * 109.65091 * 65.79162 * 27 26 17 52 52 H 1.08002 * 119.99878 * 0.04362 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0001 6 6 3.5807 -1.1969 0.0013 7 6 4.3342 -2.5020 0.0023 8 6 4.5861 -2.9357 1.4234 9 8 4.1920 -2.2524 2.3448 10 7 5.2492 -4.0827 1.6705 11 6 5.6383 -4.9804 0.5724 12 6 5.1223 -6.3904 0.8732 13 6 5.6098 -6.8323 2.2560 14 6 5.0653 -5.8726 3.3132 15 1 3.9765 -5.8589 3.2651 16 6 5.5088 -6.3130 4.7104 17 7 5.0563 -5.3032 5.6791 18 6 4.3156 -5.6712 6.7706 19 1 3.5684 -6.4457 6.6800 20 6 4.5250 -5.0484 7.9934 21 7 3.7293 -5.3083 9.0091 22 14 5.9363 -3.8418 8.1975 23 1 5.4757 -2.4762 7.8393 24 1 6.3980 -3.8542 9.6088 25 1 7.0572 -4.2357 7.3066 26 6 5.4095 -3.8948 5.4592 27 6 4.9893 -3.4876 4.0421 28 6 5.6066 -4.4646 3.0413 29 1 6.6914 -4.4642 3.1485 30 6 2.1981 -1.1969 -0.0035 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3634 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 1.6583 2.1326 0.0004 35 1 4.1204 2.1326 -0.0010 36 1 5.3517 0.0000 -0.0010 37 1 5.2864 -2.3722 -0.5121 38 1 3.7449 -3.2622 -0.5105 39 1 5.2029 -4.6242 -0.3613 40 1 6.7245 -5.0004 0.4855 41 1 4.0324 -6.3893 0.8558 42 1 5.4965 -7.0824 0.1187 43 1 5.2532 -7.8414 2.4622 44 1 6.6995 -6.8197 2.2789 45 1 5.0626 -7.2781 4.9502 46 1 6.5955 -6.3920 4.7429 47 1 3.8758 -4.8734 9.8637 48 1 6.4863 -3.7674 5.5709 49 1 4.8913 -3.2700 6.1867 50 1 5.3433 -2.4781 3.8324 51 1 3.9030 -3.5178 3.9590 52 1 1.6582 -2.1323 -0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021657007.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:49 Heat of formation + Delta-G solvation = 17.758976 kcal Electronic energy + Delta-G solvation = -31057.645499 eV Core-core repulsion = 27215.450768 eV Total energy + Delta-G solvation = -3842.194730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.69665 -39.42385 -37.76450 -36.06469 -33.73008 -33.05115 -32.53527 -32.01120 -30.57334 -29.79640 -27.96590 -26.92987 -25.73784 -24.62850 -22.94015 -22.45075 -22.05343 -21.07580 -20.41650 -19.69004 -18.82429 -16.90334 -16.63311 -16.42855 -15.91641 -15.88695 -15.04888 -15.02436 -14.71746 -14.52106 -14.26611 -14.05438 -13.87575 -13.44528 -13.36642 -13.13918 -13.08887 -13.01922 -12.58165 -12.51428 -12.38924 -12.33161 -11.96506 -11.95198 -11.83556 -11.43844 -11.18076 -11.12484 -11.08219 -10.99481 -10.87793 -10.50514 -10.34858 -10.23912 -10.06571 -9.55384 -9.43930 -8.96511 -8.77220 -8.62424 -8.53168 -8.31000 -6.71423 -5.87674 -3.37493 1.25841 1.34014 2.76032 3.06406 3.40596 3.51417 3.54572 3.70194 4.49177 4.58798 4.59532 4.64914 4.75008 4.80408 4.88039 4.91246 5.01172 5.10001 5.17491 5.18474 5.21209 5.30460 5.36476 5.39208 5.42160 5.44764 5.46488 5.56089 5.57756 5.69490 5.76927 5.78881 5.93396 5.97721 6.03321 6.04247 6.12396 6.20561 6.22604 6.30143 6.37477 6.41115 6.47683 6.53174 6.59417 6.70163 6.80610 6.85947 6.92563 6.94660 7.20991 7.58378 8.14727 8.38097 8.43169 9.02107 9.77811 10.19692 11.28029 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.003473 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.749356 B = 8060.808952 C = 9489.420195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.058 4.058 7 C -0.104 4.104 8 C 0.511 3.489 9 O -0.514 6.514 10 N -0.611 5.611 11 C 0.108 3.892 12 C -0.133 4.133 13 C -0.113 4.113 14 C -0.116 4.116 15 H 0.073 0.927 16 C 0.160 3.840 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.080 0.920 20 C 0.028 3.972 21 N -0.916 5.916 22 Si 0.895 3.105 23 H -0.287 1.287 24 H -0.305 1.305 25 H -0.267 1.267 26 C 0.115 3.885 27 C -0.115 4.115 28 C 0.159 3.841 29 H 0.064 0.936 30 C -0.105 4.105 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.022 0.978 47 H 0.262 0.738 48 H 0.023 0.977 49 H 0.070 0.930 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 5.907 -25.645 26.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.058 4.058 7 C -0.144 4.144 8 C 0.299 3.701 9 O -0.389 6.389 10 N -0.345 5.345 11 C -0.015 4.015 12 C -0.171 4.171 13 C -0.152 4.152 14 C -0.137 4.137 15 H 0.092 0.908 16 C 0.033 3.967 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.098 0.902 20 C -0.171 4.171 21 N -0.559 5.559 22 Si 0.727 3.273 23 H -0.214 1.214 24 H -0.234 1.234 25 H -0.192 1.192 26 C -0.010 4.010 27 C -0.154 4.154 28 C 0.057 3.943 29 H 0.082 0.918 30 C -0.123 4.123 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.530 6.306 -24.942 25.772 hybrid contribution 0.784 0.611 0.200 1.014 sum 2.314 6.917 -24.743 25.795 Atomic orbital electron populations 1.20787 0.91267 1.02984 1.02042 1.19862 0.96020 0.93103 0.99601 1.20994 0.94283 0.97386 1.01464 1.21054 0.94302 0.97808 1.00225 1.20923 0.99559 0.92025 1.00436 1.19255 0.93481 0.93623 0.99478 1.20774 1.01773 0.96014 0.95802 1.20428 0.78068 0.80790 0.90843 1.90824 1.49144 1.54159 1.44795 1.48277 1.57222 1.20965 1.08066 1.21720 0.99944 0.90317 0.89566 1.21897 1.01500 0.95632 0.98093 1.21509 1.00546 0.99380 0.93728 1.22083 1.01176 0.93734 0.96684 0.90814 1.20909 0.96181 0.93040 0.86573 1.44327 1.62399 1.00348 1.26156 1.18867 1.13353 1.21546 0.85357 0.90216 1.25496 0.97608 0.98938 0.95056 1.69751 1.38872 1.44990 1.02299 0.86786 0.83995 0.80971 0.75591 1.21416 1.23368 1.19211 1.21657 0.97111 0.86774 0.95474 1.22458 1.01892 0.97294 0.93775 1.21256 0.98135 0.95305 0.79640 0.91801 1.20844 0.93383 0.97612 1.00442 0.91350 0.91438 0.91566 0.86335 0.86202 0.86445 0.88359 0.88365 0.90199 0.91532 0.91592 0.91014 0.91523 0.91987 0.91628 0.95975 0.92783 0.95919 0.91177 0.90766 0.90777 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.09 -0.97 5.88 -104.62 -0.62 -1.58 16 3 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 4 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 5 C -0.11 -1.28 9.70 -39.59 -0.38 -1.67 16 6 C -0.06 -0.69 4.37 -104.63 -0.46 -1.15 16 7 C -0.10 -1.05 4.25 -29.04 -0.12 -1.18 16 8 C 0.51 7.35 7.62 -10.99 -0.08 7.27 16 9 O -0.51 -9.64 11.58 5.55 0.06 -9.57 16 10 N -0.61 -8.22 2.97 -165.32 -0.49 -8.71 16 11 C 0.11 0.99 6.32 -3.66 -0.02 0.97 16 12 C -0.13 -1.26 6.07 -26.59 -0.16 -1.42 16 13 C -0.11 -1.36 5.24 -26.75 -0.14 -1.50 16 14 C -0.12 -1.90 2.21 -90.54 -0.20 -2.10 16 15 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 16 C 0.16 3.18 5.86 -3.70 -0.02 3.16 16 17 N -0.61 -15.03 2.69 -172.26 -0.46 -15.49 16 18 C -0.26 -7.61 10.01 -15.06 -0.15 -7.76 16 19 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 20 C 0.03 0.85 5.40 -17.43 -0.09 0.75 16 21 N -0.92 -29.03 13.97 55.49 0.78 -28.26 16 22 Si 0.90 23.59 24.31 -169.99 -4.13 19.46 16 23 H -0.29 -7.45 6.72 56.52 0.38 -7.07 16 24 H -0.31 -8.10 7.11 56.52 0.40 -7.70 16 25 H -0.27 -6.80 6.08 56.52 0.34 -6.46 16 26 C 0.12 2.71 4.13 -3.68 -0.02 2.69 16 27 C -0.11 -2.35 3.80 -26.63 -0.10 -2.45 16 28 C 0.16 2.63 2.64 -67.73 -0.18 2.46 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 C -0.10 -1.25 9.36 -39.58 -0.37 -1.62 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.10 0.77 8.06 -51.93 -0.42 0.35 16 38 H 0.10 0.79 7.43 -51.93 -0.39 0.41 16 39 H 0.08 0.54 6.00 -51.93 -0.31 0.23 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.31 7.94 -51.93 -0.41 0.90 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 48 H 0.02 0.53 6.49 -51.93 -0.34 0.19 16 49 H 0.07 1.82 4.97 -51.93 -0.26 1.56 16 50 H 0.07 1.54 6.44 -51.92 -0.33 1.20 16 51 H 0.07 1.70 7.16 -51.93 -0.37 1.32 16 52 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 390.56 15.07 5.89 5.89 Total: -1.00 -34.72 390.56 -10.71 -45.43 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.80 Total: 0.40 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.54 Total: -9.13 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.18 Total: -52.46 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.06 Total: -9.57 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -4.13 Total: 19.46 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.72 -10.71 -45.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021657007.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.185 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds