Wall clock time and date at job start Wed Apr 1 2020 01:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38262 * 119.99973 * 2 1 4 4 C 1.38214 * 120.00133 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.38211 * 120.00457 * 359.97438 * 5 4 3 7 7 C 1.50701 * 120.00477 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46839 * 89.99909 * 7 6 5 9 9 O 1.21278 * 119.99832 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99810 * 180.02562 * 8 7 6 11 11 C 1.46945 * 120.84437 * 0.02562 * 10 8 7 12 12 C 1.53146 * 109.02500 * 234.00027 * 11 10 8 13 13 C 1.53120 * 109.47350 * 305.92602 * 12 11 10 14 14 C 1.52853 * 109.35318 * 60.64614 * 13 12 11 15 15 H 1.08995 * 109.24779 * 57.51717 * 14 13 12 16 16 C 1.52767 * 110.20798 * 177.56940 * 14 13 12 17 17 N 1.46895 * 109.19598 * 67.36381 * 16 14 13 18 18 C 1.36935 * 120.77498 * 233.32287 * 17 16 14 19 19 H 1.08000 * 120.00521 * 151.95972 * 18 17 16 20 20 C 1.38817 * 119.99818 * 331.95940 * 18 17 16 21 21 N 1.31620 * 119.99891 * 343.14764 * 20 18 17 22 22 Si 1.86800 * 119.99789 * 163.14369 * 20 18 17 23 23 H 1.48506 * 109.47261 * 60.00442 * 22 20 18 24 24 H 1.48503 * 109.47094 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47262 * 299.99859 * 22 20 18 26 26 C 1.46968 * 118.45182 * 53.34088 * 17 16 14 27 27 C 1.53091 * 108.62274 * 305.68228 * 26 17 16 28 28 C 1.47302 * 120.84512 * 179.72067 * 10 8 7 29 29 H 1.09001 * 110.07129 * 4.94536 * 28 10 8 30 30 C 1.38208 * 120.00186 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47139 * 89.99849 * 1 2 3 32 32 H 1.09003 * 109.46597 * 209.99919 * 1 2 3 33 33 H 1.09004 * 109.46929 * 329.99507 * 1 2 3 34 34 H 1.07996 * 119.99937 * 0.02562 * 3 2 1 35 35 H 1.07995 * 120.00079 * 179.97438 * 4 3 2 36 36 H 1.07999 * 119.99938 * 179.69477 * 5 4 3 37 37 H 1.08998 * 109.47183 * 209.99998 * 7 6 5 38 38 H 1.08998 * 109.46915 * 330.00135 * 7 6 5 39 39 H 1.09000 * 109.54928 * 353.86364 * 11 10 8 40 40 H 1.09001 * 109.54929 * 114.13538 * 11 10 8 41 41 H 1.09004 * 109.46982 * 65.91926 * 12 11 10 42 42 H 1.08997 * 109.47504 * 185.92151 * 12 11 10 43 43 H 1.09002 * 109.48546 * 180.60964 * 13 12 11 44 44 H 1.09001 * 109.48508 * 300.65623 * 13 12 11 45 45 H 1.09003 * 109.51820 * 187.27816 * 16 14 13 46 46 H 1.09002 * 109.51477 * 307.39223 * 16 14 13 47 47 H 0.97002 * 119.99691 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.61299 * 65.42558 * 26 17 16 49 49 H 1.08999 * 109.61431 * 185.94226 * 26 17 16 50 50 H 1.08995 * 109.45674 * 175.37720 * 27 26 17 51 51 H 1.09005 * 109.45110 * 295.33699 * 27 26 17 52 52 H 1.08003 * 120.00099 * 359.97338 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0016 6 6 3.5807 -1.1969 -0.0016 7 6 4.3342 -2.5020 -0.0034 8 6 4.5870 -2.9379 1.4169 9 8 4.1936 -2.2562 2.3396 10 7 5.2503 -4.0854 1.6617 11 6 5.7356 -4.9253 0.5579 12 6 5.2063 -6.3501 0.7447 13 6 5.5835 -6.8559 2.1399 14 6 4.9524 -5.9483 3.1955 15 1 3.8720 -5.9287 3.0531 16 6 5.2667 -6.4703 4.5964 17 7 6.7063 -6.3301 4.8524 18 6 7.4533 -7.4029 5.2600 19 1 8.5057 -7.4498 5.0223 20 6 6.8577 -8.4304 5.9787 21 7 5.6887 -8.2402 6.5529 22 14 7.7152 -10.0829 6.1308 23 1 9.0317 -9.8984 6.7928 24 1 6.8781 -11.0022 6.9429 25 1 7.9179 -10.6618 4.7784 26 6 7.3262 -5.0113 4.6613 27 6 7.0089 -4.5224 3.2457 28 6 5.5129 -4.5261 3.0425 29 1 5.0271 -3.8529 3.7488 30 6 2.1981 -1.1969 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3632 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1327 -0.0010 36 1 5.3517 0.0001 -0.0070 37 1 3.7445 -3.2613 -0.5170 38 1 5.2860 -2.3713 -0.5182 39 1 5.3770 -4.5245 -0.3903 40 1 6.8255 -4.9378 0.5610 41 1 4.1214 -6.3515 0.6389 42 1 5.6458 -7.0029 -0.0095 43 1 5.2162 -7.8741 2.2691 44 1 6.6678 -6.8436 2.2502 45 1 4.7078 -5.8939 5.3337 46 1 4.9843 -7.5209 4.6653 47 1 5.2727 -8.9581 7.0555 48 1 6.9229 -4.3083 5.3902 49 1 8.4059 -5.0929 4.7867 50 1 7.3922 -3.5103 3.1167 51 1 7.4798 -5.1844 2.5189 52 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021657008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:56 Heat of formation + Delta-G solvation = 2.293136 kcal Electronic energy + Delta-G solvation = -30788.646723 eV Core-core repulsion = 26945.781343 eV Total energy + Delta-G solvation = -3842.865380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -40.52439 -39.44532 -37.90742 -35.51905 -33.65716 -32.63183 -32.60563 -32.00150 -30.27804 -29.56211 -27.92404 -26.93885 -25.57173 -24.70701 -22.65114 -22.21107 -21.99798 -21.44028 -20.80919 -18.92829 -17.83419 -17.06635 -16.75456 -16.51176 -15.83607 -15.59343 -15.07991 -14.87301 -14.77413 -14.34082 -14.04606 -13.80626 -13.57924 -13.50717 -13.30094 -13.10985 -13.03096 -12.75204 -12.64453 -12.42172 -12.31581 -12.20882 -11.97252 -11.92931 -11.53660 -11.23475 -11.10054 -11.04624 -10.92548 -10.73589 -10.62655 -10.44936 -10.10737 -10.06751 -9.97029 -9.70633 -9.57517 -9.38725 -8.84142 -8.65146 -8.49632 -8.21923 -6.66856 -5.79067 -3.21457 1.25061 1.32780 2.81996 3.17586 3.37372 3.43567 3.43966 3.71113 4.48789 4.51156 4.65229 4.71164 4.77563 4.96563 5.00394 5.09708 5.16565 5.17856 5.23673 5.34347 5.38226 5.38738 5.42014 5.47536 5.48727 5.54998 5.58813 5.66042 5.70457 5.78559 5.89795 5.96663 6.02553 6.08170 6.11311 6.23883 6.32816 6.36862 6.44311 6.46551 6.49944 6.52363 6.57119 6.69597 6.78876 6.91671 6.94566 6.97810 7.04494 7.32470 7.61291 7.70936 7.79006 8.39877 8.44447 9.20652 9.83905 10.41763 11.29557 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.023031 B = 0.002469 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.441856 B =11335.849643 C =11363.697393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.124 4.124 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.057 4.057 7 C -0.103 4.103 8 C 0.513 3.487 9 O -0.537 6.537 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.135 4.135 13 C -0.104 4.104 14 C -0.114 4.114 15 H 0.056 0.944 16 C 0.177 3.823 17 N -0.588 5.588 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.147 3.853 27 C -0.141 4.141 28 C 0.157 3.843 29 H 0.093 0.907 30 C -0.105 4.105 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.019 0.981 46 H 0.091 0.909 47 H 0.254 0.746 48 H 0.019 0.981 49 H 0.056 0.944 50 H 0.050 0.950 51 H 0.065 0.935 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.367 12.959 -18.340 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.058 4.058 7 C -0.143 4.143 8 C 0.300 3.700 9 O -0.414 6.414 10 N -0.341 5.341 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.141 4.141 14 C -0.135 4.135 15 H 0.075 0.925 16 C 0.051 3.949 17 N -0.311 5.311 18 C -0.380 4.380 19 H 0.082 0.918 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.211 1.211 26 C 0.019 3.981 27 C -0.181 4.181 28 C 0.055 3.945 29 H 0.111 0.889 30 C -0.123 4.123 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.037 0.963 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.037 0.963 49 H 0.074 0.926 50 H 0.069 0.931 51 H 0.084 0.916 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.670 13.194 -17.721 22.809 hybrid contribution 0.449 -0.961 0.098 1.065 sum -5.221 12.234 -17.622 22.079 Atomic orbital electron populations 1.20782 0.91299 1.02860 1.02075 1.19858 0.95981 0.93116 0.99787 1.20984 0.94281 0.97342 1.01602 1.21053 0.94293 0.97804 1.00253 1.20943 0.99634 0.92008 1.00312 1.19300 0.93516 0.93719 0.99240 1.20733 1.01850 0.95950 0.95734 1.20403 0.77956 0.80767 0.90842 1.90713 1.50936 1.53577 1.46132 1.48634 1.55680 1.21670 1.08158 1.21697 0.99392 0.91385 0.89105 1.21970 1.00932 0.95259 0.99163 1.21428 1.02253 0.98628 0.91791 1.22102 0.98274 0.93447 0.99708 0.92514 1.20698 0.84363 1.01568 0.88291 1.44016 1.05044 1.04263 1.77737 1.19096 0.93590 0.97081 1.28231 0.91766 1.25036 0.97634 0.99807 0.97037 1.70019 1.17771 1.31853 1.35005 0.86401 0.78825 0.84135 0.77579 1.20927 1.21694 1.21066 1.20870 0.97091 0.88178 0.91926 1.22011 0.95145 0.99967 1.00969 1.21077 0.96099 0.96071 0.81227 0.88892 1.20844 0.93390 0.97596 1.00478 0.91333 0.91506 0.91617 0.86358 0.86180 0.86375 0.88239 0.88248 0.90602 0.91305 0.92192 0.91331 0.92119 0.90526 0.96301 0.89087 0.93570 0.96270 0.92561 0.93123 0.91601 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.67 16 4 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 5 C -0.11 -1.28 9.70 -39.59 -0.38 -1.66 16 6 C -0.06 -0.69 4.37 -104.62 -0.46 -1.15 16 7 C -0.10 -1.11 4.18 -29.03 -0.12 -1.23 16 8 C 0.51 7.74 7.70 -10.98 -0.08 7.66 16 9 O -0.54 -10.40 15.48 5.56 0.09 -10.32 16 10 N -0.61 -8.94 2.62 -165.85 -0.43 -9.38 16 11 C 0.11 1.23 5.84 -3.72 -0.02 1.21 16 12 C -0.14 -1.67 6.08 -26.59 -0.16 -1.84 16 13 C -0.10 -1.72 4.86 -26.74 -0.13 -1.85 16 14 C -0.11 -2.14 2.52 -90.49 -0.23 -2.37 16 15 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.18 4.14 4.68 -3.95 -0.02 4.12 16 17 N -0.59 -14.24 2.63 -172.63 -0.45 -14.70 16 18 C -0.25 -6.65 9.60 -15.06 -0.14 -6.79 16 19 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 20 C 0.00 0.10 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -25.84 11.19 55.49 0.62 -25.22 16 22 Si 0.90 21.31 29.59 -169.99 -5.03 16.28 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.15 3.06 6.50 -3.74 -0.02 3.04 16 27 C -0.14 -2.47 4.92 -27.70 -0.14 -2.61 16 28 C 0.16 2.79 2.57 -68.19 -0.18 2.62 16 29 H 0.09 1.91 7.06 -51.93 -0.37 1.54 16 30 C -0.10 -1.24 9.36 -39.58 -0.37 -1.61 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 33 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.10 0.88 7.66 -51.93 -0.40 0.48 16 38 H 0.10 0.85 7.88 -51.93 -0.41 0.44 16 39 H 0.08 0.64 5.96 -51.93 -0.31 0.33 16 40 H 0.07 0.78 7.18 -51.93 -0.37 0.40 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.40 6.18 -51.93 -0.32 1.08 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.09 2.37 6.07 -51.93 -0.31 2.05 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.07 1.13 5.26 -51.93 -0.27 0.85 16 52 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 397.19 15.07 5.99 5.99 Total: -1.00 -31.58 397.19 -11.44 -43.02 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.64 Total: 2.19 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -3.58 Total: -7.87 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.27 Total: -49.29 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.58 -11.44 -43.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021657008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.318 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds