Wall clock time and date at job start Wed Apr 1 2020 01:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 119.99411 * 2 1 4 4 C 1.38220 * 119.99570 * 179.80868 * 3 2 1 5 5 C 1.38257 * 119.99708 * 0.41663 * 4 3 2 6 6 C 1.38211 * 120.00081 * 359.81291 * 5 4 3 7 7 C 1.38210 * 120.00041 * 180.26801 * 2 1 3 8 8 C 1.50704 * 120.00064 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.46972 * 84.99950 * 8 7 2 10 10 O 1.21283 * 120.00080 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.47060 * 120.84388 * 354.12712 * 11 9 8 13 13 C 1.52664 * 109.30185 * 233.36387 * 12 11 9 14 14 C 1.53142 * 109.69223 * 306.24876 * 13 12 11 15 15 C 1.52826 * 109.26192 * 60.71042 * 14 13 12 16 16 H 1.09001 * 109.46828 * 57.99463 * 15 14 13 17 17 C 1.53060 * 110.34240 * 178.53298 * 15 14 13 18 18 N 1.47070 * 108.33351 * 175.44457 * 17 15 14 19 19 C 1.36939 * 120.47055 * 126.65334 * 18 17 15 20 20 H 1.08007 * 119.99911 * 214.78398 * 19 18 17 21 21 C 1.38807 * 120.00184 * 34.78493 * 19 18 17 22 22 N 1.31616 * 119.99979 * 5.38639 * 21 19 18 23 23 Si 1.86799 * 120.00080 * 185.37962 * 21 19 18 24 24 H 1.48498 * 109.47052 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47308 * 120.00322 * 23 21 19 26 26 H 1.48504 * 109.47351 * 240.00162 * 23 21 19 27 27 C 1.46862 * 119.05554 * 306.67697 * 18 17 15 28 28 C 1.53311 * 109.10100 * 52.65496 * 27 18 17 29 29 C 1.46716 * 120.84382 * 174.39998 * 11 9 8 30 30 H 1.09004 * 109.52886 * 245.43138 * 29 11 9 31 31 H 1.08996 * 109.47297 * 269.72279 * 1 2 3 32 32 H 1.08996 * 109.47562 * 29.73234 * 1 2 3 33 33 H 1.09007 * 109.46956 * 149.72707 * 1 2 3 34 34 H 1.07999 * 120.00467 * 359.97438 * 3 2 1 35 35 H 1.07997 * 119.99822 * 180.20975 * 4 3 2 36 36 H 1.08007 * 119.99472 * 179.79086 * 5 4 3 37 37 H 1.08004 * 119.99904 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.46970 * 204.99852 * 8 7 2 39 39 H 1.08999 * 109.47002 * 324.99866 * 8 7 2 40 40 H 1.08999 * 109.54273 * 353.28716 * 12 11 9 41 41 H 1.09008 * 109.54570 * 113.54818 * 12 11 9 42 42 H 1.09000 * 109.52215 * 186.11188 * 13 12 11 43 43 H 1.08996 * 109.26919 * 66.23574 * 13 12 11 44 44 H 1.08997 * 109.51000 * 300.77504 * 14 13 12 45 45 H 1.09001 * 109.50485 * 180.64343 * 14 13 12 46 46 H 1.08996 * 109.69442 * 55.73316 * 17 15 14 47 47 H 1.09007 * 109.69260 * 295.15193 * 17 15 14 48 48 H 0.97004 * 120.00416 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.53427 * 292.76808 * 27 18 17 50 50 H 1.09000 * 109.59822 * 172.57927 * 27 18 17 51 51 H 1.09008 * 109.55954 * 186.05571 * 28 27 18 52 52 H 1.09003 * 109.55922 * 65.74019 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0040 5 6 4.2717 0.0001 -0.0007 6 6 3.5806 -1.1968 -0.0055 7 6 2.1981 -1.1969 -0.0056 8 6 1.4446 -2.5021 -0.0111 9 6 1.0857 -2.8688 -1.4281 10 8 1.4102 -2.1423 -2.3433 11 7 0.4049 -4.0048 -1.6782 12 6 0.1148 -4.9627 -0.6008 13 6 0.6051 -6.3487 -1.0123 14 6 0.0092 -6.7242 -2.3721 15 6 0.4630 -5.7079 -3.4194 16 1 1.5521 -5.6878 -3.4581 17 6 -0.0897 -6.0808 -4.7972 18 7 0.2797 -5.0199 -5.7464 19 6 0.9320 -5.3263 -6.9108 20 1 1.6670 -4.6449 -7.3134 21 6 0.6486 -6.5124 -7.5737 22 7 -0.3202 -7.2920 -7.1426 23 14 1.6422 -7.0022 -9.0778 24 1 2.6659 -5.9628 -9.3548 25 1 2.3135 -8.3026 -8.8257 26 1 0.7375 -7.1310 -10.2484 27 6 -0.0604 -3.6273 -5.4274 28 6 0.4706 -3.2887 -4.0296 29 6 -0.0603 -4.3199 -3.0335 30 1 -1.1501 -4.3191 -3.0541 31 1 -0.3634 -0.0050 1.0276 32 1 -0.3634 0.8923 -0.5096 33 1 -0.3633 -0.8876 -0.5181 34 1 1.6582 2.1327 -0.0004 35 1 4.1203 2.1328 0.0074 36 1 5.3517 0.0002 -0.0010 37 1 4.1207 -2.1321 -0.0096 38 1 2.0697 -3.2843 0.4194 39 1 0.5342 -2.3984 0.5792 40 1 0.6260 -4.6525 0.3104 41 1 -0.9602 -4.9975 -0.4235 42 1 0.2962 -7.0807 -0.2661 43 1 1.6927 -6.3392 -1.0828 44 1 -1.0788 -6.7184 -2.3069 45 1 0.3521 -7.7188 -2.6576 46 1 -1.1751 -6.1667 -4.7466 47 1 0.3396 -7.0290 -5.1209 48 1 -0.5181 -8.1211 -7.6056 49 1 -1.1432 -3.5031 -5.4459 50 1 0.3952 -2.9624 -6.1612 51 1 0.1304 -2.2940 -3.7411 52 1 1.5602 -3.3155 -4.0368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021729913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:14 Heat of formation + Delta-G solvation = 13.907769 kcal Electronic energy + Delta-G solvation = -31303.495829 eV Core-core repulsion = 27461.134098 eV Total energy + Delta-G solvation = -3842.361731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.64308 -39.38891 -37.51956 -35.79185 -33.53569 -32.78532 -32.65598 -32.07225 -30.21511 -29.28334 -27.95894 -26.71443 -25.50935 -24.58650 -22.60546 -22.43810 -22.01261 -21.02917 -20.13013 -19.34613 -18.71965 -16.69782 -16.57020 -16.42304 -16.00645 -15.65023 -14.93775 -14.90181 -14.68461 -14.27901 -14.05846 -13.89391 -13.50267 -13.39576 -13.27612 -13.07364 -12.93074 -12.80357 -12.52049 -12.32174 -12.21192 -12.07076 -12.02129 -11.89373 -11.44340 -11.08099 -11.01197 -10.93990 -10.88646 -10.84451 -10.72004 -10.61627 -10.19277 -9.99712 -9.93682 -9.72402 -9.40626 -8.94216 -8.74100 -8.56264 -8.41419 -8.15777 -6.47100 -5.73775 -3.24535 1.28544 1.36029 2.84098 3.19068 3.39161 3.46576 3.49608 3.73681 4.52413 4.55647 4.69779 4.71315 4.85235 4.92413 4.93976 5.05461 5.14549 5.17630 5.23020 5.32503 5.40316 5.46144 5.46847 5.50586 5.53594 5.60090 5.64875 5.71853 5.74328 5.77678 5.95239 5.98752 6.00995 6.09469 6.19039 6.30013 6.39529 6.41557 6.45204 6.46003 6.50679 6.58681 6.62887 6.71452 6.86168 6.96490 7.01798 7.09326 7.28381 7.42241 7.71446 7.73297 7.85543 8.47282 8.56758 9.29328 9.89531 10.49366 11.33836 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.003060 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.325633 B = 9149.279449 C =10052.331812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.104 4.104 7 C -0.062 4.062 8 C -0.106 4.106 9 C 0.512 3.488 10 O -0.517 6.517 11 N -0.610 5.610 12 C 0.108 3.892 13 C -0.133 4.133 14 C -0.111 4.111 15 C -0.121 4.121 16 H 0.065 0.935 17 C 0.185 3.815 18 N -0.594 5.594 19 C -0.249 4.249 20 H 0.062 0.938 21 C 0.006 3.994 22 N -0.907 5.907 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.138 3.862 28 C -0.113 4.113 29 C 0.158 3.842 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.018 0.982 47 H 0.089 0.911 48 H 0.253 0.747 49 H 0.012 0.988 50 H 0.054 0.946 51 H 0.070 0.930 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 9.421 21.090 23.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.122 4.122 7 C -0.062 4.062 8 C -0.146 4.146 9 C 0.299 3.701 10 O -0.393 6.393 11 N -0.344 5.344 12 C -0.015 4.015 13 C -0.172 4.172 14 C -0.150 4.150 15 C -0.142 4.142 16 H 0.083 0.917 17 C 0.058 3.942 18 N -0.316 5.316 19 C -0.379 4.379 20 H 0.080 0.920 21 C -0.193 4.193 22 N -0.551 5.551 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.216 1.216 27 C 0.012 3.988 28 C -0.152 4.152 29 C 0.056 3.944 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.036 0.964 47 H 0.107 0.893 48 H 0.063 0.937 49 H 0.030 0.970 50 H 0.072 0.928 51 H 0.089 0.911 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.104 9.676 20.492 22.759 hybrid contribution 0.494 -0.526 -0.735 1.030 sum 2.599 9.150 19.757 21.927 Atomic orbital electron populations 1.20818 0.91460 1.03215 1.01762 1.19683 0.95868 0.92579 0.98753 1.20963 0.94273 0.97266 1.01407 1.21085 0.94309 0.97925 1.00455 1.21051 0.99689 0.92500 1.01137 1.20966 0.93438 0.98189 0.99573 1.19156 0.93404 0.93218 1.00422 1.20801 1.01606 0.96071 0.96131 1.20358 0.78120 0.81039 0.90539 1.90799 1.52034 1.51446 1.44995 1.48335 1.55930 1.19968 1.10127 1.21611 1.00644 0.89537 0.89707 1.21834 1.01214 0.95712 0.98419 1.21480 1.00263 0.99619 0.93612 1.22284 1.00931 0.92905 0.98117 0.91686 1.20762 0.96121 0.93776 0.83523 1.44035 1.67445 1.00537 1.19622 1.19233 1.14932 1.04876 0.98888 0.91996 1.25254 0.96908 0.99282 0.97834 1.69947 1.30604 1.13439 1.41128 0.86208 0.79417 0.78116 0.82998 1.20219 1.21662 1.21600 1.21151 0.96111 0.87563 0.94004 1.22435 1.01606 0.96719 0.94481 1.21314 0.97242 0.96314 0.79489 0.91934 0.91331 0.91445 0.91505 0.86276 0.86337 0.86271 0.86334 0.88529 0.88327 0.90455 0.91594 0.91183 0.91836 0.92140 0.91620 0.96415 0.89271 0.93728 0.96977 0.92764 0.91140 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.22 36.01 0.33 -0.83 16 2 C -0.07 -0.81 5.88 -104.62 -0.62 -1.43 16 3 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 4 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 5 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 6 C -0.10 -1.22 9.68 -39.59 -0.38 -1.61 16 7 C -0.06 -0.75 4.37 -104.62 -0.46 -1.21 16 8 C -0.11 -1.15 3.58 -29.03 -0.10 -1.25 16 9 C 0.51 7.58 6.84 -10.99 -0.08 7.51 16 10 O -0.52 -9.65 11.58 5.56 0.06 -9.59 16 11 N -0.61 -8.82 2.98 -165.60 -0.49 -9.31 16 12 C 0.11 1.15 6.29 -3.91 -0.02 1.13 16 13 C -0.13 -1.53 6.05 -26.83 -0.16 -1.69 16 14 C -0.11 -1.67 5.24 -26.75 -0.14 -1.81 16 15 C -0.12 -2.30 2.21 -90.54 -0.20 -2.50 16 16 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 17 C 0.18 4.39 4.55 -3.70 -0.02 4.38 16 18 N -0.59 -15.44 2.98 -172.26 -0.51 -15.95 16 19 C -0.25 -7.07 9.54 -15.06 -0.14 -7.21 16 20 H 0.06 1.76 7.83 -52.48 -0.41 1.35 16 21 C 0.01 0.16 5.14 -17.43 -0.09 0.07 16 22 N -0.91 -26.38 11.01 55.49 0.61 -25.77 16 23 Si 0.90 22.10 29.56 -169.99 -5.02 17.08 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C 0.14 3.17 6.50 -3.68 -0.02 3.14 16 28 C -0.11 -2.30 3.79 -26.63 -0.10 -2.40 16 29 C 0.16 2.82 2.64 -67.73 -0.18 2.64 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.07 0.75 6.16 -51.92 -0.32 0.43 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 37 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 38 H 0.10 0.86 7.36 -51.93 -0.38 0.48 16 39 H 0.10 0.86 6.98 -51.93 -0.36 0.50 16 40 H 0.08 0.62 6.00 -51.93 -0.31 0.30 16 41 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.09 2.38 6.22 -51.92 -0.32 2.06 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.05 1.25 7.93 -51.93 -0.41 0.84 16 51 H 0.07 1.42 6.47 -51.92 -0.34 1.09 16 52 H 0.07 1.55 7.14 -51.93 -0.37 1.18 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -32.51 392.89 -11.70 -44.21 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.70 Total: 1.60 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.56 Total: -8.19 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.40 Total: -51.03 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.06 Total: -9.59 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.51 -11.70 -44.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021729913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.116 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds