Wall clock time and date at job start Wed Apr 1 2020 01:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38257 * 119.99411 * 2 1 4 4 C 1.38220 * 119.99570 * 179.80868 * 3 2 1 5 5 C 1.38257 * 119.99708 * 0.41663 * 4 3 2 6 6 C 1.38211 * 120.00081 * 359.81291 * 5 4 3 7 7 C 1.38210 * 120.00041 * 180.26801 * 2 1 3 8 8 C 1.50704 * 120.00064 * 359.97438 * 7 2 1 9 9 C 1.50701 * 109.46972 * 84.99950 * 8 7 2 10 10 O 1.21283 * 120.00080 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99914 * 179.97438 * 9 8 7 12 12 C 1.47060 * 120.84388 * 354.12712 * 11 9 8 13 13 C 1.52664 * 109.30185 * 233.36387 * 12 11 9 14 14 C 1.53142 * 109.69223 * 306.24876 * 13 12 11 15 15 C 1.52826 * 109.26192 * 60.71042 * 14 13 12 16 16 H 1.09001 * 109.46828 * 57.99463 * 15 14 13 17 17 C 1.53060 * 110.34240 * 178.53298 * 15 14 13 18 18 N 1.47070 * 108.33351 * 175.44457 * 17 15 14 19 19 C 1.36939 * 120.47055 * 126.65334 * 18 17 15 20 20 H 1.08007 * 119.99911 * 214.78398 * 19 18 17 21 21 C 1.38807 * 120.00184 * 34.78493 * 19 18 17 22 22 N 1.31616 * 119.99979 * 5.38639 * 21 19 18 23 23 Si 1.86799 * 120.00080 * 185.37962 * 21 19 18 24 24 H 1.48498 * 109.47052 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.47308 * 120.00322 * 23 21 19 26 26 H 1.48504 * 109.47351 * 240.00162 * 23 21 19 27 27 C 1.46862 * 119.05554 * 306.67697 * 18 17 15 28 28 C 1.53311 * 109.10100 * 52.65496 * 27 18 17 29 29 C 1.46716 * 120.84382 * 174.39998 * 11 9 8 30 30 H 1.09004 * 109.52886 * 245.43138 * 29 11 9 31 31 H 1.08996 * 109.47297 * 269.72279 * 1 2 3 32 32 H 1.08996 * 109.47562 * 29.73234 * 1 2 3 33 33 H 1.09007 * 109.46956 * 149.72707 * 1 2 3 34 34 H 1.07999 * 120.00467 * 359.97438 * 3 2 1 35 35 H 1.07997 * 119.99822 * 180.20975 * 4 3 2 36 36 H 1.08007 * 119.99472 * 179.79086 * 5 4 3 37 37 H 1.08004 * 119.99904 * 179.97438 * 6 5 4 38 38 H 1.08999 * 109.46970 * 204.99852 * 8 7 2 39 39 H 1.08999 * 109.47002 * 324.99866 * 8 7 2 40 40 H 1.08999 * 109.54273 * 353.28716 * 12 11 9 41 41 H 1.09008 * 109.54570 * 113.54818 * 12 11 9 42 42 H 1.09000 * 109.52215 * 186.11188 * 13 12 11 43 43 H 1.08996 * 109.26919 * 66.23574 * 13 12 11 44 44 H 1.08997 * 109.51000 * 300.77504 * 14 13 12 45 45 H 1.09001 * 109.50485 * 180.64343 * 14 13 12 46 46 H 1.08996 * 109.69442 * 55.73316 * 17 15 14 47 47 H 1.09007 * 109.69260 * 295.15193 * 17 15 14 48 48 H 0.97004 * 120.00416 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.53427 * 292.76808 * 27 18 17 50 50 H 1.09000 * 109.59822 * 172.57927 * 27 18 17 51 51 H 1.09008 * 109.55954 * 186.05571 * 28 27 18 52 52 H 1.09003 * 109.55922 * 65.74019 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 0.0040 5 6 4.2717 0.0001 -0.0007 6 6 3.5806 -1.1968 -0.0055 7 6 2.1981 -1.1969 -0.0056 8 6 1.4446 -2.5021 -0.0111 9 6 1.0857 -2.8688 -1.4281 10 8 1.4102 -2.1423 -2.3433 11 7 0.4049 -4.0048 -1.6782 12 6 0.1148 -4.9627 -0.6008 13 6 0.6051 -6.3487 -1.0123 14 6 0.0092 -6.7242 -2.3721 15 6 0.4630 -5.7079 -3.4194 16 1 1.5521 -5.6878 -3.4581 17 6 -0.0897 -6.0808 -4.7972 18 7 0.2797 -5.0199 -5.7464 19 6 0.9320 -5.3263 -6.9108 20 1 1.6670 -4.6449 -7.3134 21 6 0.6486 -6.5124 -7.5737 22 7 -0.3202 -7.2920 -7.1426 23 14 1.6422 -7.0022 -9.0778 24 1 2.6659 -5.9628 -9.3548 25 1 2.3135 -8.3026 -8.8257 26 1 0.7375 -7.1310 -10.2484 27 6 -0.0604 -3.6273 -5.4274 28 6 0.4706 -3.2887 -4.0296 29 6 -0.0603 -4.3199 -3.0335 30 1 -1.1501 -4.3191 -3.0541 31 1 -0.3634 -0.0050 1.0276 32 1 -0.3634 0.8923 -0.5096 33 1 -0.3633 -0.8876 -0.5181 34 1 1.6582 2.1327 -0.0004 35 1 4.1203 2.1328 0.0074 36 1 5.3517 0.0002 -0.0010 37 1 4.1207 -2.1321 -0.0096 38 1 2.0697 -3.2843 0.4194 39 1 0.5342 -2.3984 0.5792 40 1 0.6260 -4.6525 0.3104 41 1 -0.9602 -4.9975 -0.4235 42 1 0.2962 -7.0807 -0.2661 43 1 1.6927 -6.3392 -1.0828 44 1 -1.0788 -6.7184 -2.3069 45 1 0.3521 -7.7188 -2.6576 46 1 -1.1751 -6.1667 -4.7466 47 1 0.3396 -7.0290 -5.1209 48 1 -0.5181 -8.1211 -7.6056 49 1 -1.1432 -3.5031 -5.4459 50 1 0.3952 -2.9624 -6.1612 51 1 0.1304 -2.2940 -3.7411 52 1 1.5602 -3.3155 -4.0368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021729913.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:13 Heat of formation + Delta-G solvation = -2.976562 kcal Electronic energy + Delta-G solvation = -31304.227989 eV Core-core repulsion = 27461.134098 eV Total energy + Delta-G solvation = -3843.093891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.82495 -40.34653 -38.89177 -37.32080 -34.78765 -34.12327 -33.99512 -33.06443 -31.88419 -30.85957 -28.97271 -27.60299 -27.16474 -25.98581 -24.19867 -23.84861 -22.98137 -22.01180 -21.42514 -21.06185 -19.82097 -18.73189 -17.65494 -17.38161 -17.00655 -16.87916 -16.64677 -16.04288 -15.75221 -15.51780 -15.47238 -15.28283 -15.05774 -14.81089 -14.26017 -14.14861 -14.03140 -13.91558 -13.82148 -13.65407 -13.46798 -13.19490 -13.11740 -12.89070 -12.82368 -12.80950 -12.70017 -12.53512 -12.16621 -12.07674 -12.01813 -11.81200 -11.77327 -11.71168 -11.57631 -11.42361 -11.02896 -10.61145 -10.16078 -9.64263 -9.45467 -9.40122 -8.56473 -7.89333 -5.45341 0.45734 0.54104 1.42362 1.43239 1.54707 1.73533 2.08493 2.46719 2.89722 3.24770 3.62267 3.66386 3.74726 3.89389 3.92659 3.97426 4.10520 4.11935 4.17817 4.20634 4.31930 4.36010 4.37865 4.46582 4.51525 4.56600 4.62656 4.72723 4.73157 4.79605 4.83059 4.86514 4.88466 4.92713 4.97000 4.97744 5.02009 5.13429 5.17541 5.21767 5.33136 5.33247 5.40513 5.45856 5.52771 5.60664 5.62361 5.65179 5.71905 5.76371 5.78610 6.18047 6.40641 6.60092 7.14286 7.33765 7.81285 8.35784 9.14935 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014872 B = 0.003060 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.325633 B = 9149.279449 C =10052.331812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.085 4.085 3 C -0.134 4.134 4 C -0.127 4.127 5 C -0.139 4.139 6 C -0.121 4.121 7 C -0.081 4.081 8 C -0.094 4.094 9 C 0.508 3.492 10 O -0.564 6.564 11 N -0.609 5.609 12 C 0.102 3.898 13 C -0.126 4.126 14 C -0.109 4.109 15 C -0.107 4.107 16 H 0.038 0.962 17 C 0.194 3.806 18 N -0.614 5.614 19 C -0.271 4.271 20 H 0.053 0.947 21 C -0.041 4.041 22 N -0.931 5.931 23 Si 0.969 3.031 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.286 1.286 27 C 0.136 3.864 28 C -0.090 4.090 29 C 0.166 3.834 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.116 0.884 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.056 0.944 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.001 0.999 47 H 0.055 0.945 48 H 0.252 0.748 49 H 0.013 0.987 50 H 0.042 0.958 51 H 0.073 0.927 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 9.533 23.986 25.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.085 4.085 3 C -0.152 4.152 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.139 4.139 7 C -0.081 4.081 8 C -0.133 4.133 9 C 0.297 3.703 10 O -0.443 6.443 11 N -0.342 5.342 12 C -0.019 4.019 13 C -0.164 4.164 14 C -0.147 4.147 15 C -0.128 4.128 16 H 0.057 0.943 17 C 0.068 3.932 18 N -0.337 5.337 19 C -0.401 4.401 20 H 0.071 0.929 21 C -0.237 4.237 22 N -0.576 5.576 23 Si 0.797 3.203 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.213 1.213 27 C 0.010 3.990 28 C -0.129 4.129 29 C 0.063 3.937 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.154 0.846 37 H 0.144 0.856 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.104 0.896 42 H 0.126 0.874 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.019 0.981 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.031 0.969 50 H 0.061 0.939 51 H 0.091 0.909 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.120 9.783 23.440 25.487 hybrid contribution 0.495 -0.505 -1.665 1.809 sum 2.615 9.278 21.774 23.813 Atomic orbital electron populations 1.20820 0.90427 1.02629 1.03050 1.20008 0.96886 0.92882 0.98732 1.21280 0.94766 0.97914 1.01276 1.21419 0.94512 0.98795 0.99750 1.21359 1.00768 0.92542 1.00978 1.21231 0.93816 0.98945 0.99917 1.19386 0.93736 0.93964 1.01031 1.20789 1.03146 0.96195 0.93195 1.21102 0.76950 0.80288 0.91927 1.90774 1.53819 1.52822 1.46878 1.48354 1.55642 1.20899 1.09316 1.21989 1.02542 0.87891 0.89496 1.21811 1.00563 0.97298 0.96689 1.21462 1.00951 0.97758 0.94543 1.21997 0.98890 0.95254 0.96696 0.94311 1.20557 0.94826 0.91980 0.85818 1.44303 1.67629 1.01953 1.19823 1.19448 1.15329 1.05250 1.00098 0.92925 1.25977 0.98082 0.99130 1.00534 1.70102 1.31797 1.13577 1.42095 0.85186 0.78040 0.77750 0.79357 1.19667 1.21126 1.21262 1.21237 0.96068 0.86072 0.95601 1.22122 0.99474 0.97713 0.93602 1.20934 0.97068 0.94375 0.81319 0.91720 0.88994 0.91367 0.92734 0.84663 0.84264 0.84637 0.85599 0.85999 0.85528 0.86572 0.89554 0.87443 0.92531 0.91308 0.92405 0.98115 0.92658 0.93835 0.96879 0.93905 0.90867 0.94160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 9.22 71.24 0.66 -1.37 16 2 C -0.09 -1.87 5.88 -19.87 -0.12 -1.99 16 3 C -0.13 -2.76 9.70 22.27 0.22 -2.54 16 4 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 5 C -0.14 -2.86 10.05 22.27 0.22 -2.64 16 6 C -0.12 -2.71 9.68 22.27 0.22 -2.49 16 7 C -0.08 -1.82 4.37 -19.87 -0.09 -1.91 16 8 C -0.09 -1.74 3.58 29.10 0.10 -1.63 16 9 C 0.51 14.22 6.84 87.66 0.60 14.82 16 10 O -0.56 -21.13 11.58 -3.04 -0.04 -21.16 16 11 N -0.61 -16.38 2.98 -796.23 -2.37 -18.75 16 12 C 0.10 1.73 6.29 86.16 0.54 2.28 16 13 C -0.13 -2.43 6.05 30.53 0.18 -2.25 16 14 C -0.11 -3.13 5.24 30.58 0.16 -2.97 16 15 C -0.11 -4.15 2.21 -10.74 -0.02 -4.17 16 16 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 17 C 0.19 9.67 4.55 86.29 0.39 10.06 16 18 N -0.61 -33.46 2.98 -698.90 -2.09 -35.55 16 19 C -0.27 -16.02 9.54 84.03 0.80 -15.21 16 20 H 0.05 3.13 7.83 -2.91 -0.02 3.11 16 21 C -0.04 -2.39 5.14 84.86 0.44 -1.96 16 22 N -0.93 -55.82 11.01 21.65 0.24 -55.58 16 23 Si 0.97 46.49 29.56 68.60 2.03 48.52 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 27 C 0.14 6.54 6.50 86.41 0.56 7.10 16 28 C -0.09 -3.78 3.79 30.66 0.12 -3.66 16 29 C 0.17 5.92 2.64 45.00 0.12 6.04 16 30 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.07 1.18 8.08 -2.39 -0.02 1.17 16 33 H 0.05 1.11 6.16 -2.38 -0.01 1.10 16 34 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 35 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.13 2.48 8.06 -2.91 -0.02 2.45 16 38 H 0.12 1.64 7.36 -2.39 -0.02 1.62 16 39 H 0.13 1.64 6.98 -2.39 -0.02 1.62 16 40 H 0.12 1.16 6.00 -2.39 -0.01 1.14 16 41 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 42 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 47 H 0.06 3.11 6.22 -2.38 -0.01 3.09 16 48 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 49 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.04 2.08 7.93 -2.39 -0.02 2.07 16 51 H 0.07 3.04 6.47 -2.38 -0.02 3.02 16 52 H 0.04 1.91 7.14 -2.39 -0.02 1.89 16 Total: -1.00 -75.34 392.89 3.99 -71.34 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.89 Total: 17.94 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 5.33 Total: -6.77 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -4.22 Total: -109.88 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.04 Total: -21.16 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -75.34 3.99 -71.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021729913.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.368 kcal (2) G-P(sol) polarization free energy of solvation -75.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds