Wall clock time and date at job start Wed Apr 1 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 115.55685 * 2 1 4 4 C 1.38243 * 120.00352 * 84.17457 * 3 2 1 5 5 C 1.38235 * 120.00242 * 179.80743 * 4 3 2 6 6 C 1.38229 * 119.99899 * 0.41902 * 5 4 3 7 7 C 1.38234 * 120.00191 * 359.81047 * 6 5 4 8 8 C 1.38235 * 120.00290 * 264.43921 * 3 2 1 9 9 C 1.52996 * 117.50021 * 214.31237 * 2 1 3 10 10 C 1.52995 * 117.50066 * 145.68391 * 2 1 3 11 11 H 1.09007 * 117.49771 * 0.02562 * 10 2 1 12 12 C 1.50694 * 117.50208 * 214.97895 * 10 2 1 13 13 O 1.21279 * 120.00169 * 312.11620 * 12 10 2 14 14 N 1.34781 * 119.99884 * 132.11269 * 12 10 2 15 15 C 1.46498 * 120.00186 * 180.02562 * 14 12 10 16 16 C 1.52995 * 109.47456 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.58238 * 61.51381 * 16 15 14 18 18 C 1.53193 * 109.58763 * 181.94187 * 16 15 14 19 19 C 1.53042 * 109.31113 * 174.42132 * 18 16 15 20 20 C 1.53043 * 109.53852 * 298.63546 * 19 18 16 21 21 C 1.53189 * 109.31130 * 61.36630 * 20 19 18 22 22 N 1.46923 * 109.58563 * 301.23194 * 16 15 14 23 23 C 1.36940 * 120.63185 * 6.62717 * 22 16 15 24 24 H 1.08000 * 119.99844 * 329.42345 * 23 22 16 25 25 C 1.38811 * 120.00233 * 149.42650 * 23 22 16 26 26 N 1.31615 * 120.00044 * 340.33442 * 25 23 22 27 27 Si 1.86801 * 119.99829 * 160.32809 * 25 23 22 28 28 H 1.48501 * 109.47168 * 90.00309 * 27 25 23 29 29 H 1.48505 * 109.47101 * 209.99828 * 27 25 23 30 30 H 1.48498 * 109.47317 * 330.00223 * 27 25 23 31 31 H 1.09001 * 109.47351 * 274.31012 * 1 2 3 32 32 H 1.08995 * 109.47270 * 34.30954 * 1 2 3 33 33 H 1.08995 * 109.47163 * 154.31127 * 1 2 3 34 34 H 1.08004 * 119.99475 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.00058 * 180.20444 * 5 4 3 36 36 H 1.07998 * 120.00040 * 179.79495 * 6 5 4 37 37 H 1.08005 * 120.00307 * 179.97438 * 7 6 5 38 38 H 1.08001 * 119.99714 * 359.97438 * 8 3 2 39 39 H 1.08996 * 117.49783 * 145.02266 * 9 2 1 40 40 H 1.08998 * 117.51961 * 359.97438 * 9 2 1 41 41 H 0.97005 * 120.00025 * 0.02562 * 14 12 10 42 42 H 1.09007 * 109.47006 * 300.00352 * 15 14 12 43 43 H 1.09000 * 109.47433 * 59.99780 * 15 14 12 44 44 H 1.08998 * 109.49879 * 294.37293 * 18 16 15 45 45 H 1.08993 * 109.49678 * 54.47298 * 18 16 15 46 46 H 1.08997 * 109.45940 * 178.61436 * 19 18 16 47 47 H 1.09000 * 109.44866 * 58.64796 * 19 18 16 48 48 H 1.09000 * 109.49754 * 301.41244 * 20 19 18 49 49 H 1.09001 * 109.49442 * 181.31383 * 20 19 18 50 50 H 1.08998 * 109.58477 * 185.57706 * 21 20 19 51 51 H 1.09000 * 109.58671 * 65.15346 * 21 20 19 52 52 H 0.96995 * 119.99833 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3595 0.0000 4 6 2.3687 2.0356 1.1910 5 6 2.9687 3.2810 1.1914 6 6 3.3722 3.8541 0.0000 7 6 3.1794 3.1802 -1.1915 8 6 2.5830 1.9331 -1.1915 9 6 2.2365 -1.1209 -0.7650 10 6 2.2365 -1.1209 0.7651 11 1 1.6112 -1.8586 1.2681 12 6 3.5293 -0.7810 1.4608 13 8 4.3936 -0.1693 0.8695 14 7 3.7250 -1.1568 2.7403 15 6 4.9815 -0.8259 3.4170 16 6 4.9467 -1.3637 4.8488 17 1 4.8467 -2.4490 4.8291 18 6 6.2395 -0.9772 5.5741 19 6 6.1403 -1.3956 7.0429 20 6 4.9749 -0.6590 7.7074 21 6 3.6679 -1.0420 7.0062 22 7 3.8076 -0.7771 5.5678 23 6 2.8932 0.0014 4.9097 24 1 3.1998 0.5925 4.0593 25 6 1.5724 0.0309 5.3355 26 7 1.1023 -0.9398 6.0898 27 14 0.4622 1.4485 4.8380 28 1 -0.2176 1.1197 3.5593 29 1 -0.5555 1.6748 5.8956 30 1 1.2769 2.6777 4.6637 31 1 -0.3634 0.0772 1.0247 32 1 -0.3633 0.8488 -0.5792 33 1 -0.3633 -0.9260 -0.4455 34 1 2.0497 1.5895 2.1214 35 1 3.1190 3.8076 2.1221 36 1 3.8380 4.8285 -0.0001 37 1 3.4943 3.6281 -2.1224 38 1 2.4322 1.4066 -2.1224 39 1 3.1716 -0.8751 -1.2682 40 1 1.6116 -1.8588 -1.2681 41 1 3.0338 -1.6463 3.2132 42 1 5.8142 -1.2792 2.8790 43 1 5.1088 0.2564 3.4380 44 1 7.0840 -1.4844 5.1076 45 1 6.3829 0.1014 5.5121 46 1 7.0687 -1.1440 7.5557 47 1 5.9720 -2.4709 7.1034 48 1 5.1303 0.4167 7.6252 49 1 4.9194 -0.9399 8.7591 50 1 2.8489 -0.4465 7.4095 51 1 3.4649 -2.1011 7.1647 52 1 0.1794 -0.9189 6.3876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024560364.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:49 Heat of formation + Delta-G solvation = 29.551272 kcal Electronic energy + Delta-G solvation = -31936.075130 eV Core-core repulsion = 28094.391752 eV Total energy + Delta-G solvation = -3841.683378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.16080 -38.60280 -37.74003 -36.38018 -34.03038 -33.05449 -30.84493 -30.54830 -30.31521 -29.95213 -28.46429 -26.24261 -25.01093 -23.18035 -22.86483 -22.17432 -21.90737 -20.62036 -19.78877 -19.24094 -18.88723 -17.22667 -16.33986 -16.07875 -15.63027 -15.24576 -14.60152 -14.56828 -14.25357 -14.17128 -14.00907 -13.67940 -13.54775 -13.37584 -13.07262 -12.94474 -12.84900 -12.53892 -12.45708 -12.31770 -12.03988 -11.98607 -11.72861 -11.58526 -11.18887 -11.05033 -10.80417 -10.75745 -10.72873 -10.55595 -10.31456 -10.16771 -10.14186 -10.02168 -9.73130 -9.54981 -9.42956 -9.08276 -8.57158 -8.54221 -8.38638 -8.07290 -6.68894 -5.87940 -3.29871 1.69438 1.77460 3.03218 3.28518 3.38296 3.42058 3.85321 4.08382 4.17751 4.40943 4.78017 4.96555 5.03767 5.21110 5.22100 5.26591 5.30652 5.32136 5.45132 5.51367 5.56227 5.62959 5.68359 5.75948 5.80988 5.83249 5.88144 5.96514 5.99715 6.02222 6.07700 6.16431 6.20817 6.29102 6.33918 6.35785 6.37278 6.40008 6.41737 6.58651 6.68999 6.70979 6.78079 6.83414 6.87589 6.97872 6.99124 7.28775 7.32431 7.35270 7.56058 7.79129 8.36440 8.41233 9.01653 9.13148 9.76096 10.34897 11.19207 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.004519 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.306230 B = 6195.082599 C = 6766.297585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.062 4.062 3 C -0.031 4.031 4 C -0.094 4.094 5 C -0.115 4.115 6 C -0.125 4.125 7 C -0.125 4.125 8 C -0.107 4.107 9 C -0.138 4.138 10 C -0.172 4.172 11 H 0.120 0.880 12 C 0.535 3.465 13 O -0.555 6.555 14 N -0.691 5.691 15 C 0.138 3.862 16 C 0.160 3.840 17 H 0.031 0.969 18 C -0.127 4.127 19 C -0.107 4.107 20 C -0.144 4.144 21 C 0.175 3.825 22 N -0.587 5.587 23 C -0.251 4.251 24 H 0.071 0.929 25 C 0.011 3.989 26 N -0.895 5.895 27 Si 0.879 3.121 28 H -0.282 1.282 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.415 0.585 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.053 0.947 49 H 0.046 0.954 50 H 0.078 0.922 51 H 0.019 0.981 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.373 0.739 -9.087 9.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.062 4.062 3 C -0.031 4.031 4 C -0.112 4.112 5 C -0.133 4.133 6 C -0.143 4.143 7 C -0.144 4.144 8 C -0.125 4.125 9 C -0.175 4.175 10 C -0.194 4.194 11 H 0.138 0.862 12 C 0.321 3.679 13 O -0.434 6.434 14 N -0.342 5.342 15 C 0.013 3.987 16 C 0.053 3.947 17 H 0.049 0.951 18 C -0.167 4.167 19 C -0.145 4.145 20 C -0.183 4.183 21 C 0.049 3.951 22 N -0.311 5.311 23 C -0.380 4.380 24 H 0.089 0.911 25 C -0.188 4.188 26 N -0.538 5.538 27 Si 0.708 3.292 28 H -0.208 1.208 29 H -0.217 1.217 30 H -0.203 1.203 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.253 0.747 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.096 0.904 51 H 0.037 0.963 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.812 1.134 -9.407 9.883 hybrid contribution -0.970 0.466 0.388 1.144 sum 1.842 1.601 -9.019 9.343 Atomic orbital electron populations 1.21375 0.90854 1.01998 1.02809 1.20114 0.94302 0.88096 1.03729 1.18803 0.97746 0.93272 0.93307 1.21056 0.97705 0.94661 0.97767 1.21083 0.98590 0.95731 0.97944 1.21029 1.00748 0.99779 0.92774 1.20967 1.00299 0.95392 0.97692 1.20801 0.99055 0.95425 0.97188 1.23157 1.02686 0.99718 0.91932 1.22434 0.98449 1.03222 0.95258 0.86184 1.19357 0.87109 0.79371 0.82043 1.90643 1.45036 1.41556 1.66195 1.45962 1.19637 1.57093 1.11472 1.21217 0.85229 1.00420 0.91785 1.20724 0.88885 0.95400 0.89643 0.95148 1.21935 0.97650 1.01128 0.95957 1.21356 0.97752 0.99728 0.95626 1.22179 0.98146 0.99834 0.98116 1.20694 0.93291 0.98025 0.83059 1.44068 1.25595 1.57751 1.03659 1.19177 0.87546 1.18040 1.13274 0.91115 1.24974 0.96447 0.97094 1.00309 1.70054 1.14722 1.29880 1.39156 0.86681 0.80921 0.83583 0.78015 1.20835 1.21697 1.20273 0.91466 0.91836 0.91905 0.86205 0.86422 0.86701 0.86655 0.86600 0.87668 0.88093 0.74657 0.92974 0.91886 0.93081 0.92115 0.93723 0.92884 0.92800 0.93540 0.90408 0.96307 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.84 37.16 0.37 -1.14 16 2 C -0.06 -0.93 2.18 -155.67 -0.34 -1.27 16 3 C -0.03 -0.52 3.61 -104.62 -0.38 -0.90 16 4 C -0.09 -1.76 8.27 -39.58 -0.33 -2.09 16 5 C -0.12 -1.99 10.05 -39.59 -0.40 -2.39 16 6 C -0.13 -1.87 10.05 -39.59 -0.40 -2.27 16 7 C -0.13 -1.78 10.05 -39.58 -0.40 -2.18 16 8 C -0.11 -1.60 9.44 -39.58 -0.37 -1.98 16 9 C -0.14 -1.86 9.13 -26.73 -0.24 -2.11 16 10 C -0.17 -2.77 5.90 -91.77 -0.54 -3.32 16 11 H 0.12 1.80 8.14 -51.92 -0.42 1.38 16 12 C 0.54 10.17 6.32 -10.99 -0.07 10.10 16 13 O -0.55 -11.83 14.89 5.56 0.08 -11.74 16 14 N -0.69 -13.32 3.77 -60.30 -0.23 -13.55 16 15 C 0.14 2.63 4.44 -4.04 -0.02 2.61 16 16 C 0.16 3.08 3.03 -67.60 -0.20 2.88 16 17 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 18 C -0.13 -2.14 5.37 -26.61 -0.14 -2.28 16 19 C -0.11 -1.74 5.88 -26.69 -0.16 -1.90 16 20 C -0.14 -2.63 6.08 -26.61 -0.16 -2.79 16 21 C 0.17 3.87 5.31 -3.71 -0.02 3.85 16 22 N -0.59 -13.13 2.96 -164.78 -0.49 -13.62 16 23 C -0.25 -6.08 6.85 -15.06 -0.10 -6.19 16 24 H 0.07 1.77 5.86 -52.49 -0.31 1.46 16 25 C 0.01 0.29 4.82 -17.43 -0.08 0.20 16 26 N -0.89 -23.78 11.57 55.49 0.64 -23.14 16 27 Si 0.88 20.48 28.89 -169.99 -4.91 15.57 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.06 0.69 7.90 -51.93 -0.41 0.27 16 34 H 0.12 2.50 7.32 -52.48 -0.38 2.12 16 35 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.12 1.31 8.06 -52.48 -0.42 0.88 16 38 H 0.12 1.48 8.04 -52.49 -0.42 1.06 16 39 H 0.10 1.54 7.79 -51.93 -0.40 1.13 16 40 H 0.10 1.08 8.05 -51.93 -0.42 0.66 16 41 H 0.42 8.44 7.26 -40.82 -0.30 8.14 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.06 1.33 7.51 -51.93 -0.39 0.94 16 44 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.08 1.94 6.35 -51.93 -0.33 1.61 16 51 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 52 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 406.19 15.07 6.12 6.12 Total: -1.00 -27.91 406.19 -11.61 -39.52 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -8.84 Total: 13.98 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -3.99 Total: -13.13 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.07 Total: -50.31 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.91 Total: 15.57 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -27.91 -11.61 -39.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024560364.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.067 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds