Wall clock time and date at job start Wed Apr 1 2020 02:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 115.55685 * 2 1 4 4 C 1.38243 * 120.00352 * 84.17457 * 3 2 1 5 5 C 1.38235 * 120.00242 * 179.80743 * 4 3 2 6 6 C 1.38229 * 119.99899 * 0.41902 * 5 4 3 7 7 C 1.38234 * 120.00191 * 359.81047 * 6 5 4 8 8 C 1.38235 * 120.00290 * 264.43921 * 3 2 1 9 9 C 1.52996 * 117.50021 * 214.31237 * 2 1 3 10 10 C 1.52995 * 117.50066 * 145.68391 * 2 1 3 11 11 H 1.09007 * 117.49771 * 0.02562 * 10 2 1 12 12 C 1.50694 * 117.50208 * 214.97895 * 10 2 1 13 13 O 1.21279 * 120.00169 * 312.11620 * 12 10 2 14 14 N 1.34781 * 119.99884 * 132.11269 * 12 10 2 15 15 C 1.46498 * 120.00186 * 180.02562 * 14 12 10 16 16 C 1.52995 * 109.47456 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.58238 * 61.51381 * 16 15 14 18 18 C 1.53193 * 109.58763 * 181.94187 * 16 15 14 19 19 C 1.53042 * 109.31113 * 174.42132 * 18 16 15 20 20 C 1.53043 * 109.53852 * 298.63546 * 19 18 16 21 21 C 1.53189 * 109.31130 * 61.36630 * 20 19 18 22 22 N 1.46923 * 109.58563 * 301.23194 * 16 15 14 23 23 C 1.36940 * 120.63185 * 6.62717 * 22 16 15 24 24 H 1.08000 * 119.99844 * 329.42345 * 23 22 16 25 25 C 1.38811 * 120.00233 * 149.42650 * 23 22 16 26 26 N 1.31615 * 120.00044 * 340.33442 * 25 23 22 27 27 Si 1.86801 * 119.99829 * 160.32809 * 25 23 22 28 28 H 1.48501 * 109.47168 * 90.00309 * 27 25 23 29 29 H 1.48505 * 109.47101 * 209.99828 * 27 25 23 30 30 H 1.48498 * 109.47317 * 330.00223 * 27 25 23 31 31 H 1.09001 * 109.47351 * 274.31012 * 1 2 3 32 32 H 1.08995 * 109.47270 * 34.30954 * 1 2 3 33 33 H 1.08995 * 109.47163 * 154.31127 * 1 2 3 34 34 H 1.08004 * 119.99475 * 359.97438 * 4 3 2 35 35 H 1.07995 * 120.00058 * 180.20444 * 5 4 3 36 36 H 1.07998 * 120.00040 * 179.79495 * 6 5 4 37 37 H 1.08005 * 120.00307 * 179.97438 * 7 6 5 38 38 H 1.08001 * 119.99714 * 359.97438 * 8 3 2 39 39 H 1.08996 * 117.49783 * 145.02266 * 9 2 1 40 40 H 1.08998 * 117.51961 * 359.97438 * 9 2 1 41 41 H 0.97005 * 120.00025 * 0.02562 * 14 12 10 42 42 H 1.09007 * 109.47006 * 300.00352 * 15 14 12 43 43 H 1.09000 * 109.47433 * 59.99780 * 15 14 12 44 44 H 1.08998 * 109.49879 * 294.37293 * 18 16 15 45 45 H 1.08993 * 109.49678 * 54.47298 * 18 16 15 46 46 H 1.08997 * 109.45940 * 178.61436 * 19 18 16 47 47 H 1.09000 * 109.44866 * 58.64796 * 19 18 16 48 48 H 1.09000 * 109.49754 * 301.41244 * 20 19 18 49 49 H 1.09001 * 109.49442 * 181.31383 * 20 19 18 50 50 H 1.08998 * 109.58477 * 185.57706 * 21 20 19 51 51 H 1.09000 * 109.58671 * 65.15346 * 21 20 19 52 52 H 0.96995 * 119.99833 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1801 1.3595 0.0000 4 6 2.3687 2.0356 1.1910 5 6 2.9687 3.2810 1.1914 6 6 3.3722 3.8541 0.0000 7 6 3.1794 3.1802 -1.1915 8 6 2.5830 1.9331 -1.1915 9 6 2.2365 -1.1209 -0.7650 10 6 2.2365 -1.1209 0.7651 11 1 1.6112 -1.8586 1.2681 12 6 3.5293 -0.7810 1.4608 13 8 4.3936 -0.1693 0.8695 14 7 3.7250 -1.1568 2.7403 15 6 4.9815 -0.8259 3.4170 16 6 4.9467 -1.3637 4.8488 17 1 4.8467 -2.4490 4.8291 18 6 6.2395 -0.9772 5.5741 19 6 6.1403 -1.3956 7.0429 20 6 4.9749 -0.6590 7.7074 21 6 3.6679 -1.0420 7.0062 22 7 3.8076 -0.7771 5.5678 23 6 2.8932 0.0014 4.9097 24 1 3.1998 0.5925 4.0593 25 6 1.5724 0.0309 5.3355 26 7 1.1023 -0.9398 6.0898 27 14 0.4622 1.4485 4.8380 28 1 -0.2176 1.1197 3.5593 29 1 -0.5555 1.6748 5.8956 30 1 1.2769 2.6777 4.6637 31 1 -0.3634 0.0772 1.0247 32 1 -0.3633 0.8488 -0.5792 33 1 -0.3633 -0.9260 -0.4455 34 1 2.0497 1.5895 2.1214 35 1 3.1190 3.8076 2.1221 36 1 3.8380 4.8285 -0.0001 37 1 3.4943 3.6281 -2.1224 38 1 2.4322 1.4066 -2.1224 39 1 3.1716 -0.8751 -1.2682 40 1 1.6116 -1.8588 -1.2681 41 1 3.0338 -1.6463 3.2132 42 1 5.8142 -1.2792 2.8790 43 1 5.1088 0.2564 3.4380 44 1 7.0840 -1.4844 5.1076 45 1 6.3829 0.1014 5.5121 46 1 7.0687 -1.1440 7.5557 47 1 5.9720 -2.4709 7.1034 48 1 5.1303 0.4167 7.6252 49 1 4.9194 -0.9399 8.7591 50 1 2.8489 -0.4465 7.4095 51 1 3.4649 -2.1011 7.1647 52 1 0.1794 -0.9189 6.3876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024560364.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:28:48 Heat of formation + Delta-G solvation = 16.910651 kcal Electronic energy + Delta-G solvation = -31936.623268 eV Core-core repulsion = 28094.391752 eV Total energy + Delta-G solvation = -3842.231517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.48479 -40.05198 -39.22714 -37.67331 -35.58886 -34.88412 -32.39577 -31.77445 -31.75122 -31.53194 -29.58513 -27.84380 -26.71583 -24.56213 -24.04386 -23.81763 -23.18549 -22.17335 -21.16774 -20.73994 -20.26883 -18.73507 -17.95424 -17.47637 -17.29240 -16.69299 -16.12970 -15.91730 -15.80874 -15.64439 -15.45274 -15.11347 -14.90975 -14.79723 -14.58627 -14.32184 -14.14487 -14.02582 -13.78974 -13.63398 -13.58688 -13.35355 -13.08769 -12.84743 -12.82296 -12.69254 -12.58185 -12.33450 -12.13803 -11.99401 -11.88809 -11.81608 -11.55825 -11.34038 -11.16269 -11.09364 -10.93590 -10.56024 -10.51246 -9.81017 -9.76305 -9.52430 -8.57783 -7.85918 -5.27531 0.48011 0.52314 1.35004 1.41263 1.46994 1.64291 2.41354 2.48792 2.86189 2.91836 3.29176 3.55715 3.61065 3.75680 3.87309 3.99685 4.03666 4.10103 4.13901 4.19676 4.25064 4.26700 4.29159 4.41428 4.53639 4.57110 4.63677 4.68651 4.69924 4.79304 4.82705 4.85061 4.86307 4.91450 4.97730 5.10613 5.13124 5.14158 5.16455 5.19550 5.26004 5.28342 5.37432 5.43922 5.58226 5.59036 5.62922 5.70030 5.72616 5.78351 5.80353 6.15098 6.42731 6.82892 7.18419 7.47973 7.87883 8.41798 9.18933 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011495 B = 0.004519 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.306230 B = 6195.082599 C = 6766.297585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.068 4.068 3 C -0.042 4.042 4 C -0.124 4.124 5 C -0.138 4.138 6 C -0.127 4.127 7 C -0.120 4.120 8 C -0.111 4.111 9 C -0.106 4.106 10 C -0.197 4.197 11 H 0.127 0.873 12 C 0.535 3.465 13 O -0.580 6.580 14 N -0.696 5.696 15 C 0.145 3.855 16 C 0.160 3.840 17 H 0.032 0.968 18 C -0.122 4.122 19 C -0.102 4.102 20 C -0.135 4.135 21 C 0.179 3.821 22 N -0.599 5.599 23 C -0.230 4.230 24 H 0.060 0.940 25 C -0.025 4.025 26 N -0.919 5.919 27 Si 0.918 3.082 28 H -0.278 1.278 29 H -0.298 1.298 30 H -0.285 1.285 31 H 0.041 0.959 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.143 0.857 39 H 0.097 0.903 40 H 0.139 0.861 41 H 0.409 0.591 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.081 0.919 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.045 0.955 49 H 0.066 0.934 50 H 0.043 0.957 51 H 0.003 0.997 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.665 0.358 -11.376 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.069 4.069 3 C -0.042 4.042 4 C -0.142 4.142 5 C -0.156 4.156 6 C -0.145 4.145 7 C -0.138 4.138 8 C -0.129 4.129 9 C -0.143 4.143 10 C -0.218 4.218 11 H 0.145 0.855 12 C 0.322 3.678 13 O -0.462 6.462 14 N -0.345 5.345 15 C 0.021 3.979 16 C 0.054 3.946 17 H 0.049 0.951 18 C -0.161 4.161 19 C -0.139 4.139 20 C -0.174 4.174 21 C 0.054 3.946 22 N -0.323 5.323 23 C -0.360 4.360 24 H 0.078 0.922 25 C -0.221 4.221 26 N -0.565 5.565 27 Si 0.749 3.251 28 H -0.205 1.205 29 H -0.225 1.225 30 H -0.211 1.211 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.160 0.840 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.116 0.884 40 H 0.157 0.843 41 H 0.246 0.754 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.061 0.939 51 H 0.021 0.979 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.125 0.754 -11.699 12.428 hybrid contribution -1.298 0.623 1.064 1.790 sum 2.827 1.377 -10.635 11.091 Atomic orbital electron populations 1.21372 0.89511 1.03982 1.01692 1.20280 0.95263 0.87506 1.03859 1.19029 0.97913 0.94015 0.93230 1.20930 1.00086 0.95893 0.97338 1.21211 0.99617 0.95741 0.99043 1.21350 1.00153 1.00884 0.92103 1.21441 0.98683 0.94904 0.98769 1.21177 0.98334 0.95939 0.97435 1.23266 1.02401 0.98977 0.89663 1.22478 0.97436 1.04679 0.97196 0.85524 1.19828 0.87842 0.78401 0.81696 1.90608 1.46242 1.42676 1.66672 1.46007 1.19499 1.57153 1.11838 1.21137 0.85836 0.98829 0.92116 1.20874 0.88956 0.95092 0.89657 0.95052 1.21887 0.96895 1.00884 0.96436 1.21338 0.97930 0.99648 0.94997 1.22042 0.96752 0.99573 0.99023 1.20539 0.94486 0.96352 0.83236 1.44253 1.26069 1.57869 1.04155 1.19126 0.87681 1.17071 1.12165 0.92233 1.25292 0.97341 0.98322 1.01192 1.70136 1.14487 1.31042 1.40845 0.86046 0.79707 0.81908 0.77482 1.20485 1.22498 1.21136 0.93963 0.90890 0.89010 0.89797 0.87125 0.83957 0.82974 0.83892 0.88433 0.84322 0.75408 0.91450 0.94446 0.90090 0.93044 0.90695 0.92322 0.93662 0.91582 0.93865 0.97873 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.73 9.84 71.98 0.71 -2.02 16 2 C -0.07 -2.00 2.18 -52.93 -0.12 -2.11 16 3 C -0.04 -1.39 3.61 -19.87 -0.07 -1.46 16 4 C -0.12 -4.84 8.27 22.27 0.18 -4.66 16 5 C -0.14 -4.90 10.05 22.27 0.22 -4.68 16 6 C -0.13 -3.63 10.05 22.27 0.22 -3.41 16 7 C -0.12 -3.09 10.05 22.27 0.22 -2.86 16 8 C -0.11 -3.09 9.44 22.27 0.21 -2.88 16 9 C -0.11 -2.60 9.13 30.59 0.28 -2.32 16 10 C -0.20 -6.25 5.90 -11.54 -0.07 -6.32 16 11 H 0.13 3.78 8.14 -2.38 -0.02 3.76 16 12 C 0.53 20.66 6.32 87.65 0.55 21.21 16 13 O -0.58 -25.00 14.89 -3.03 -0.05 -25.05 16 14 N -0.70 -27.61 3.77 -463.06 -1.74 -29.35 16 15 C 0.15 5.62 4.44 86.38 0.38 6.00 16 16 C 0.16 6.13 3.03 44.97 0.14 6.27 16 17 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 18 C -0.12 -3.87 5.37 30.67 0.16 -3.70 16 19 C -0.10 -3.04 5.88 30.62 0.18 -2.86 16 20 C -0.13 -4.80 6.08 30.67 0.19 -4.62 16 21 C 0.18 8.12 5.31 86.36 0.46 8.57 16 22 N -0.60 -27.47 2.96 -675.25 -2.00 -29.47 16 23 C -0.23 -11.63 6.85 84.03 0.58 -11.05 16 24 H 0.06 3.16 5.86 -2.91 -0.02 3.14 16 25 C -0.02 -1.30 4.82 84.86 0.41 -0.89 16 26 N -0.92 -50.93 11.57 21.65 0.25 -50.68 16 27 Si 0.92 44.40 28.89 68.60 1.98 46.38 16 28 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 29 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 30 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 31 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.07 1.67 8.08 -2.39 -0.02 1.66 16 33 H 0.09 1.74 7.90 -2.39 -0.02 1.72 16 34 H 0.08 3.79 7.32 -2.91 -0.02 3.77 16 35 H 0.11 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 37 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 38 H 0.14 3.13 8.04 -2.91 -0.02 3.11 16 39 H 0.10 2.60 7.79 -2.39 -0.02 2.58 16 40 H 0.14 2.35 8.05 -2.39 -0.02 2.33 16 41 H 0.41 17.25 7.26 -92.70 -0.67 16.58 16 42 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 43 H 0.04 1.63 7.51 -2.39 -0.02 1.62 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.04 2.24 6.35 -2.39 -0.02 2.23 16 51 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 52 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -64.04 406.19 3.51 -60.53 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: 0.22 Total: 41.44 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.85 Total: -13.80 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.49 Total: -109.50 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.98 Total: 46.38 kcal Total: -64.04 3.51 -60.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024560364.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.441 kcal (2) G-P(sol) polarization free energy of solvation -64.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds