Wall clock time and date at job start Wed Apr 1 2020 02:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38230 * 120.00414 * 2 1 4 4 C 1.38232 * 120.00376 * 180.23225 * 3 2 1 5 5 C 1.38234 * 119.99648 * 359.80750 * 4 3 2 6 6 C 1.38234 * 120.00339 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00142 * 179.97438 * 6 5 4 8 8 C 1.38233 * 119.99889 * 359.97438 * 6 5 4 9 9 C 1.50694 * 120.00127 * 179.97438 * 8 6 5 10 10 C 1.50707 * 109.47118 * 89.99498 * 9 8 6 11 11 O 1.21280 * 119.99928 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99642 * 179.97438 * 10 9 8 13 13 C 1.47209 * 126.70688 * 0.02635 * 12 10 9 14 14 C 1.53781 * 106.37984 * 148.69798 * 13 12 10 15 15 H 1.09002 * 112.38161 * 256.85143 * 14 13 12 16 16 C 1.54326 * 109.06537 * 132.42994 * 14 13 12 17 17 C 1.55047 * 103.93810 * 222.03387 * 16 14 13 18 18 C 1.55059 * 102.14151 * 40.03871 * 17 16 14 19 19 H 1.09004 * 110.53263 * 201.34626 * 18 17 16 20 20 N 1.46501 * 110.53352 * 78.57252 * 18 17 16 21 21 C 1.36935 * 119.99699 * 132.46919 * 20 18 17 22 22 H 1.07999 * 120.00627 * 359.97438 * 21 20 18 23 23 C 1.38809 * 119.99669 * 180.02562 * 21 20 18 24 24 N 1.31620 * 120.00334 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00012 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47137 * 89.99866 * 25 23 21 27 27 H 1.48491 * 109.47175 * 209.99817 * 25 23 21 28 28 H 1.48495 * 109.47085 * 330.00018 * 25 23 21 29 29 C 1.54361 * 103.91752 * 319.99008 * 18 17 16 30 30 H 1.09004 * 111.65405 * 262.74957 * 29 18 17 31 31 C 1.47216 * 126.69736 * 180.02562 * 12 10 9 32 32 H 1.08995 * 109.46590 * 270.21238 * 1 2 3 33 33 H 1.08999 * 109.46571 * 30.21015 * 1 2 3 34 34 H 1.08992 * 109.46816 * 150.21506 * 1 2 3 35 35 H 1.08006 * 119.99938 * 0.06232 * 3 2 1 36 36 H 1.08000 * 120.00515 * 179.83868 * 4 3 2 37 37 H 1.08003 * 119.99881 * 180.02562 * 5 4 3 38 38 H 1.08993 * 109.47185 * 269.97963 * 7 6 5 39 39 H 1.09002 * 109.46574 * 29.98380 * 7 6 5 40 40 H 1.09001 * 109.46473 * 149.97960 * 7 6 5 41 41 H 1.09001 * 109.47278 * 330.00101 * 9 8 6 42 42 H 1.08997 * 109.47564 * 209.99602 * 9 8 6 43 43 H 1.09002 * 110.07155 * 29.46865 * 13 12 10 44 44 H 1.08999 * 110.07353 * 267.92728 * 13 12 10 45 45 H 1.08999 * 110.53206 * 103.41432 * 16 14 13 46 46 H 1.09005 * 110.53389 * 340.64846 * 16 14 13 47 47 H 1.08997 * 110.90484 * 158.25730 * 17 16 14 48 48 H 1.09005 * 110.90353 * 281.81890 * 17 16 14 49 49 H 0.96993 * 120.00203 * 312.46760 * 20 18 17 50 50 H 0.96997 * 120.00152 * 179.97438 * 24 23 21 51 51 H 1.09008 * 110.07435 * 92.07307 * 31 12 10 52 52 H 1.08994 * 110.12679 * 330.55679 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0049 5 6 4.2717 -0.0001 -0.0057 6 6 3.5805 -1.1973 -0.0011 7 6 4.3340 -2.5024 -0.0026 8 6 2.1982 -1.1972 0.0048 9 6 1.4447 -2.5022 0.0092 10 6 1.1997 -2.9361 1.4315 11 8 1.5974 -2.2526 2.3510 12 7 0.5377 -4.0831 1.6816 13 6 -0.0071 -5.0198 0.6851 14 6 0.0716 -6.4195 1.3172 15 1 0.8988 -7.0082 0.9204 16 6 -1.2818 -7.1359 1.1257 17 6 -1.5338 -7.8289 2.4896 18 6 -1.0510 -6.7528 3.4962 19 1 -0.8114 -7.2083 4.4571 20 7 -2.0663 -5.7094 3.6595 21 6 -2.4264 -5.2948 4.9139 22 1 -1.9622 -5.7372 5.7829 23 6 -3.3888 -4.3066 5.0686 24 7 -3.9550 -3.7677 4.0096 25 14 -3.8805 -3.7414 6.7798 26 1 -3.0110 -2.6122 7.1971 27 1 -5.2971 -3.2964 6.7661 28 1 -3.7243 -4.8662 7.7366 29 6 0.2197 -6.1731 2.8390 30 1 1.1242 -6.6332 3.2371 31 6 0.2183 -4.6440 3.0047 32 1 -0.3632 0.0038 1.0276 33 1 -0.3632 0.8881 -0.5171 34 1 -0.3633 -0.8919 -0.5105 35 1 1.6583 2.1325 0.0010 36 1 4.1207 2.1323 -0.0075 37 1 5.3517 -0.0002 -0.0091 38 1 4.5109 -2.8186 -1.0306 39 1 5.2887 -2.3713 0.5067 40 1 3.7472 -3.2612 0.5151 41 1 2.0315 -3.2624 -0.5065 42 1 0.4901 -2.3724 -0.5006 43 1 0.5907 -4.9864 -0.2258 44 1 -1.0438 -4.7677 0.4623 45 1 -1.2134 -7.8754 0.3279 46 1 -2.0699 -6.4137 0.9123 47 1 -2.5937 -8.0425 2.6273 48 1 -0.9406 -8.7390 2.5789 49 1 -2.4835 -5.3123 2.8791 50 1 -4.6277 -3.0775 4.1177 51 1 -0.7655 -4.3035 3.3278 52 1 0.9742 -4.3457 3.7309 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026279010.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:43 Heat of formation + Delta-G solvation = -0.969030 kcal Electronic energy + Delta-G solvation = -31014.892708 eV Core-core repulsion = 27171.885871 eV Total energy + Delta-G solvation = -3843.006838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.40467 -39.61012 -37.98219 -34.88882 -33.56885 -33.36285 -33.27811 -30.89508 -29.76257 -28.42318 -28.28621 -26.63680 -26.51197 -25.05570 -23.45799 -23.09226 -21.01869 -20.67290 -19.82310 -18.72994 -18.57334 -17.51112 -16.82771 -16.29910 -16.11681 -15.48104 -15.12326 -14.88521 -14.47560 -14.36183 -13.97077 -13.86712 -13.42396 -13.27988 -13.17739 -12.91670 -12.88788 -12.78166 -12.70481 -12.63779 -12.41274 -12.04131 -11.92208 -11.59366 -11.44710 -11.23480 -10.96014 -10.86588 -10.83240 -10.74369 -10.64643 -10.53484 -10.25901 -10.23037 -10.06326 -9.96435 -9.63364 -9.43383 -8.99768 -8.51289 -8.47948 -8.10673 -6.96985 -5.83106 -3.12484 1.38814 1.43687 3.02454 3.40204 3.42979 3.48428 3.49545 3.83501 4.55530 4.65011 4.71201 4.78021 4.83321 4.92759 4.97851 5.03429 5.14093 5.19787 5.28256 5.34510 5.47222 5.49650 5.53608 5.53969 5.64654 5.66568 5.67374 5.67831 5.80142 5.80731 5.82819 5.90948 5.95620 6.02383 6.06233 6.09427 6.17690 6.21522 6.28236 6.31742 6.45492 6.51927 6.54888 6.57261 6.65779 6.72448 6.73132 6.87161 6.92050 7.08003 7.27054 7.67686 8.02384 8.35055 8.60160 9.47223 10.01501 10.36056 11.38488 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011310 B = 0.003459 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.018170 B = 8092.650515 C = 9623.440485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.127 4.127 4 C -0.116 4.116 5 C -0.129 4.129 6 C -0.069 4.069 7 C -0.115 4.115 8 C -0.062 4.062 9 C -0.104 4.104 10 C 0.528 3.472 11 O -0.536 6.536 12 N -0.612 5.612 13 C 0.107 3.893 14 C -0.099 4.099 15 H 0.078 0.922 16 C -0.113 4.113 17 C -0.139 4.139 18 C 0.176 3.824 19 H 0.066 0.934 20 N -0.706 5.706 21 C -0.249 4.249 22 H 0.072 0.928 23 C -0.007 4.007 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.124 4.124 30 H 0.072 0.928 31 C 0.096 3.904 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.130 0.870 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.867 0.196 -13.789 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.069 4.069 7 C -0.172 4.172 8 C -0.062 4.062 9 C -0.143 4.143 10 C 0.316 3.684 11 O -0.413 6.413 12 N -0.345 5.345 13 C -0.016 4.016 14 C -0.118 4.118 15 H 0.096 0.904 16 C -0.151 4.151 17 C -0.178 4.178 18 C 0.064 3.936 19 H 0.084 0.916 20 N -0.346 5.346 21 C -0.380 4.380 22 H 0.090 0.910 23 C -0.203 4.203 24 N -0.576 5.576 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.146 4.146 30 H 0.091 0.909 31 C -0.026 4.026 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.220 0.780 50 H 0.066 0.934 51 H 0.147 0.853 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.051 0.700 -13.101 18.505 hybrid contribution -0.373 0.489 0.624 0.876 sum 12.677 1.189 -12.477 17.827 Atomic orbital electron populations 1.20893 0.91194 1.02462 1.03137 1.19723 0.96017 0.92528 0.98145 1.20932 0.94231 0.97257 1.02107 1.21037 0.94282 0.97743 1.00353 1.20896 0.99383 0.91978 1.02460 1.19659 0.92943 0.95384 0.98915 1.20813 0.99956 0.94612 1.01823 1.18991 0.92717 0.93294 1.01240 1.20729 1.02051 0.95941 0.95618 1.19927 0.77821 0.79898 0.90720 1.90715 1.51233 1.52849 1.46513 1.48604 1.55060 1.21492 1.09369 1.22237 0.99056 0.88892 0.91450 1.22529 0.98254 0.94692 0.96339 0.90364 1.22490 0.95865 0.99118 0.97655 1.23070 1.01387 0.97915 0.95457 1.21052 0.87779 0.88889 0.95865 0.91595 1.42437 1.43881 1.42089 1.06155 1.19283 1.17527 1.16179 0.84965 0.90983 1.24717 0.99286 0.99286 0.97039 1.69643 1.30456 1.30028 1.27480 0.86234 0.77570 0.78670 0.83989 1.21602 1.21804 1.20718 1.23226 1.00687 0.96160 0.94558 0.90936 1.22721 1.05121 0.91668 0.83087 0.90479 0.91599 0.91386 0.86264 0.86360 0.86392 0.91264 0.91531 0.91572 0.88478 0.88005 0.91772 0.90988 0.92525 0.91038 0.91224 0.92289 0.77989 0.93426 0.85259 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 9.60 36.01 0.35 -1.21 16 2 C -0.06 -0.90 5.88 -104.62 -0.62 -1.51 16 3 C -0.13 -1.62 9.70 -39.59 -0.38 -2.00 16 4 C -0.12 -1.37 10.05 -39.59 -0.40 -1.77 16 5 C -0.13 -1.57 9.70 -39.58 -0.38 -1.95 16 6 C -0.07 -0.91 5.88 -104.62 -0.62 -1.53 16 7 C -0.12 -1.26 9.19 36.01 0.33 -0.93 16 8 C -0.06 -0.88 4.37 -104.63 -0.46 -1.34 16 9 C -0.10 -1.39 3.73 -29.03 -0.11 -1.49 16 10 C 0.53 9.32 7.47 -10.98 -0.08 9.24 16 11 O -0.54 -11.77 16.27 5.56 0.09 -11.68 16 12 N -0.61 -10.46 3.32 -171.56 -0.57 -11.03 16 13 C 0.11 1.46 6.38 -3.25 -0.02 1.44 16 14 C -0.10 -1.32 3.91 -88.53 -0.35 -1.67 16 15 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 16 C -0.11 -1.52 6.13 -24.96 -0.15 -1.68 16 17 C -0.14 -2.10 6.61 -24.56 -0.16 -2.26 16 18 C 0.18 3.20 3.53 -66.13 -0.23 2.96 16 19 H 0.07 1.23 7.87 -51.93 -0.41 0.82 16 20 N -0.71 -16.09 2.95 -51.68 -0.15 -16.25 16 21 C -0.25 -6.50 9.42 -15.06 -0.14 -6.65 16 22 H 0.07 1.85 7.70 -52.49 -0.40 1.45 16 23 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 24 N -0.93 -26.90 13.06 55.49 0.72 -26.17 16 25 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C -0.12 -2.02 3.89 -88.50 -0.34 -2.36 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 C 0.10 1.87 6.40 -3.23 -0.02 1.85 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.07 0.81 5.94 -51.93 -0.31 0.51 16 35 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.07 0.80 6.37 -51.93 -0.33 0.47 16 41 H 0.10 1.06 6.42 -51.93 -0.33 0.73 16 42 H 0.10 1.22 5.94 -51.93 -0.31 0.91 16 43 H 0.06 0.69 7.31 -51.93 -0.38 0.31 16 44 H 0.07 1.04 7.13 -51.93 -0.37 0.67 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.07 1.07 6.84 -51.93 -0.35 0.71 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.39 9.39 7.30 -40.82 -0.30 9.10 16 50 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 51 H 0.13 3.07 5.10 -51.92 -0.26 2.81 16 52 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 LS Contribution 401.30 15.07 6.05 6.05 Total: -1.00 -31.51 401.30 -11.14 -42.65 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -8.38 Total: 12.45 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -3.89 Total: -13.13 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.00 Total: -53.44 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.51 -11.14 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026279010.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.685 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds